Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq44424 163 5e-38 seq272 96.9 6e-18 seq69 95.1 2e-17 >seq44424 Length=209 Score = 163 bits (180), Expect = 5e-38 Identities = 134/162 (83%), Gaps = 1/162 (1%) Strand=Plus/Plus Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||| |||||| | ||| || ||||||||||| ||||| ||||||||| | || Sbjct 1 CTATTCTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGT 60 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| || |||||||||||||||||||||||||| ||||| ||| ||||||||||| || Sbjct 61 ATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATT 120 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||||||||||| ||||||||||| |||| Sbjct 121 TGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTGGGGG 161 >seq272 Length=443556 Score = 96.9 bits (106), Expect = 6e-18 Identities = 177/256 (69%), Gaps = 5/256 (2%) Strand=Plus/Minus Query 49 CTGGGTGTGCCGGGGAGCCAG-GACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGG 107 ||| |||| || || ||| | | | |||||| ||||| ||||||| ||||||||||||| Sbjct 237889 CTGAGTGTCCCATGGGGCCTGAGGCATTTACTCTGAAACAATTAGAATGTTCAAAGCAGG 237830 Query 108 C---CTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG 164 | | | ||||| ||| |||||||| || || ||| ||| |||||||| || Sbjct 237829 CAGGAGTCACATAGATACAGAAGCCAGGAATAATGGAGTAAGAC-TGCAGTTCTATTCTG 237771 Query 165 TTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATT 224 ||||||||| | || | | || ||||| ||| |||| | ||| | |||| | Sbjct 237770 TTGGTTTCTGGAACTGAGGGCATAATTAAGAGGAATAGCCAGGGACATTCATATTGCAGC 237711 Query 225 GTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGG 284 | |||||||||||||||| | | |||| || | | ||| || ||||| Sbjct 237710 ACTACAGGTGAAATTCTTGGACTGGTGCAAGATGGACAAGAGTAAAATTATTTGCCAAGA 237651 Query 285 ATGTTTTCATTAATCA 300 |||||||||||| ||| Sbjct 237650 ATGTTTTCATTACTCA 237635 >seq69 Length=12658979 Score = 95.1 bits (104), Expect = 2e-17 Identities = 158/226 (70%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATG 131 ||||||||| ||||||||||||||| | ||||| ||| | || | || || Sbjct 9036545 TTTACTTTGGAAAAATTAGAGTGTTTGATGCAGGATCAAGCTGCTGCATTCGGCAG-ATA 9036603 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 |||||||||||||| | |||||| |||||||| || | | || | || |||||| Sbjct 9036604 CGCTAATAGAATAGGACTTCTGGTTCTGCTTTGTTGGCTTTTGGAACTGAAGTCATGATT 9036663 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 || | |||| ||| |||| | | ||| | ||| ||||||||||||| |||| | | Sbjct 9036664 AAAAAGGATGGTCCTGGGTATTGGAATTAAGTTGCTAGAGGTGAAATTCGTGGAACTTTG 9036723 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAA 297 |||| || | | | |||| || ||||| || |||| ||||| Sbjct 9036724 CAAGATGGACCAGAGTGGAAGCATTTGCCAAGAATATTTTTATTAA 9036769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914738949696