Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq160 100 1e-18 seq17 84.2 9e-14 seq127 77.0 1e-11 >seq160 Length=2410589 Score = 100 bits (110), Expect = 1e-18 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| | ||| |||||||| |||||||||| || ||| ||||||||||||| |||||| Sbjct 2355178 TGTTAGTACCTGAAAGATGATGAACTATGCTTGGGGAGGTTGAAGCCAGAGGACACTCTG 2355119 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| | || ||| ||| | ||||||| | | ||| || ||||||||| || || Sbjct 2355118 GTGGAGGTCCCTAGAGGTCCTGACATGCAAATTGGTTGTCCAACCTGGGTATAGAGGGGA 2355059 >seq17 Length=30241141 Score = 84.2 bits (92), Expect = 9e-14 Identities = 59/66 (89%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||||||||||||||||||||||| || |||| ||||||||||||||||||| Sbjct 6718789 TGTTAGGACCCGAAAGATGGTGAACTATGCTTGGGCAGGGCGAAGCCAGAGGAAACTCTG 6718848 Query 624 G-TGGA 628 | |||| Sbjct 6718849 GCTGGA 6718854 >seq127 Length=4658995 Score = 77.0 bits (84), Expect = 1e-11 Identities = 73/91 (80%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAAT-GGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| |||| ||||||||||||| | ||| ||| |||||| | | ||||| |||||| Sbjct 34 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAAGCGGGTGGTAAACTCCATCTAAGGCTAAA 93 Query 99 TATTGGCCAGAGACCGATAG-CGCACAAGTA 128 || ||| ||||||||||| | ||||||| Sbjct 94 TACCGGCACGAGACCGATAGTCAAACAAGTA 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078919413350