Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq14 154 2e-35 seq5 118 2e-24 seq272 84.2 3e-14 >seq14 Length=35124889 Score = 154 bits (170), Expect = 2e-35 Identities = 105/117 (90%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||| |||||||| |||||||||||||||||||||||||||| Sbjct 7011480 CTAGTTAGCATGCCAGAGTCTCATTCGTTATTGGAATTAACCAGACAAATCACTCCACCA 7011421 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| |||||||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 7011420 GCTAA-AACGGCCATGCACCACCACCCACAGAATCAAGAAAGAGATATCAATCTGTC 7011365 >seq5 Length=45903626 Score = 118 bits (130), Expect = 2e-24 Identities = 171/237 (72%), Gaps = 12/237 (5%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGG-CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73 |||| |||||| | |||| | |||||| |||||||||||||||| ||||| | |||| Sbjct 13425573 GTCACTGTAGCACATGTGCAGTCCCAGA-CATCTAAGGGCATCACCAACCTGCTGTTGCT 13425515 Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 ||| || | |||| | ||| | |||||||| || || | | | || ||| Sbjct 13425514 --AAATCTCGGATAGCTGAACACCACTTGTCCCTCTCAGGAGTTTGAAA--ATGCAGAGT 13425459 Query 134 CG------ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | ||| ||| |||||| | | ||||| |||| || |||||| ||||||| Sbjct 13425458 TGGGGCTCATGTAACTAGTTAGCATGCCAGAGTCTCATTCGATACTGGAATTTACCAGAC 13425399 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 ||||| |||||||| |||||| ||||| ||||| ||||||| ||||||||||||| Sbjct 13425398 AAATCCCTCCACCACGTAAGAATGGCCACACACCAACACCCATGGAATCAAGAAAGA 13425342 >seq272 Length=443556 Score = 84.2 bits (92), Expect = 3e-14 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | | || ||||||||| | |||||||||| ||||| |||||| | Sbjct 218430 CTAGTTAGCATGCCAGAGCCTTGTTCGTTATTGAAATTAACCAGGCAAATTGCTCCACAA 218489 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 ||||| | ||||||| ||||||| || |||| |||||||||||| Sbjct 218490 ACTAAAACTGGCCATGTACCACCATGCACAGAAATGGGAAAGAGCTATC 218538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796411139937