Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16]
50,377 sequences; 2,578,019,207 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq14 154 2e-35
seq5 118 2e-24
seq272 84.2 3e-14
>seq14
Length=35124889
Score = 154 bits (170), Expect = 2e-35
Identities = 105/117 (90%), Gaps = 1/117 (1%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 7011480 CTAGTTAGCATGCCAGAGTCTCATTCGTTATTGGAATTAACCAGACAAATCACTCCACCA 7011421
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 7011420 GCTAA-AACGGCCATGCACCACCACCCACAGAATCAAGAAAGAGATATCAATCTGTC 7011365
>seq5
Length=45903626
Score = 118 bits (130), Expect = 2e-24
Identities = 171/237 (72%), Gaps = 12/237 (5%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGG-CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73
|||| |||||| | |||| | |||||| |||||||||||||||| ||||| | ||||
Sbjct 13425573 GTCACTGTAGCACATGTGCAGTCCCAGA-CATCTAAGGGCATCACCAACCTGCTGTTGCT 13425515
Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133
||| || | |||| | ||| | |||||||| || || | | | || |||
Sbjct 13425514 --AAATCTCGGATAGCTGAACACCACTTGTCCCTCTCAGGAGTTTGAAA--ATGCAGAGT 13425459
Query 134 CG------ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
| ||| ||| |||||| | | ||||| |||| || |||||| |||||||
Sbjct 13425458 TGGGGCTCATGTAACTAGTTAGCATGCCAGAGTCTCATTCGATACTGGAATTTACCAGAC 13425399
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244
||||| |||||||| |||||| ||||| ||||| ||||||| |||||||||||||
Sbjct 13425398 AAATCCCTCCACCACGTAAGAATGGCCACACACCAACACCCATGGAATCAAGAAAGA 13425342
>seq272
Length=443556
Score = 84.2 bits (92), Expect = 3e-14
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | | || ||||||||| | |||||||||| ||||| |||||| |
Sbjct 218430 CTAGTTAGCATGCCAGAGCCTTGTTCGTTATTGAAATTAACCAGGCAAATTGCTCCACAA 218489
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250
||||| | ||||||| ||||||| || |||| ||||||||||||
Sbjct 218490 ACTAAAACTGGCCATGTACCACCATGCACAGAAATGGGAAAGAGCTATC 218538
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796411139937
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |