Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16]
50,377 sequences; 2,578,019,207 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq160 246 5e-63
seq9 183 5e-44
seq4 84.2 4e-14
seq26 77.0 6e-12
>seq160
Length=2410589
Score = 246 bits (272), Expect = 5e-63
Identities = 212/261 (81%), Gaps = 1/261 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||||||||||||||||||||||| | | |||||||| |||||||||||||||
Sbjct 2352535 TCATCAGTAGGGTAAAACTAACCTGTCTCACCAGGATCTAAACCTAGCTCACGTTCCCTA 2352594
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
|||| ||| |||||||||| |||| |||||||||||| ||||||| |||||| |
Sbjct 2352595 TTAGCAGGTAAACAATCCAAGGCTTGGTGAATTCTGCTTCACAGTGATAGGGAGAGCCTA 2352654
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
||| |||||||||||||| | || ||||| ||| |||||||||||||||||| ||||||
Sbjct 2352655 AATCAAAGGATCAAAAAGCGA-GTTGCTATAAACACTTGGCTGCCACAAGCCAATTATCC 2352713
Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270
||||||||||||||| | |||||| || | ||| |||| | ||||||| |||
Sbjct 2352714 CTGTGGTAACTTTTCCGACACCTCCTGCTTAAAACCCAAAGGGTCAGAAGGATCATGAGG 2352773
Query 271 CCACACTTTCATGGTTTGTAT 291
| |||||||||| | |||
Sbjct 2352774 CTGTGCTTTCATGGTCTTTAT 2352794
>seq9
Length=38035322
Score = 183 bits (202), Expect = 5e-44
Identities = 164/205 (80%), Gaps = 3/205 (1%)
Strand=Plus/Plus
Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
||||||| ||||||||||||| || ||||| ||||||| ||| ||| | ||||||||
Sbjct 28152273 ATCAGTAAAGTAAAACTAACCTATCCCATGATGGTCTAATCCCGACTCTCCCTCCCTATT 28152332
Query 93 AGTGGGTGAACAAT---CCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
| || |||| ||| |||| |||| ||||||| |||| ||||||||||||| |
Sbjct 28152333 AATGAATGAATAATTCACCAATGCTTGGTGAATTCTACTTCACAATGATAGGAAGAGACA 28152392
Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209
| || |||||||| |||||||| | | |||||||| ||||| ||||||||||||||||
Sbjct 28152393 ATTTCAAAGGATCATAAAGCAACATTGTTATGAACGTTTGGCCACCACAAGCCAGTTATC 28152452
Query 210 CCTGTGGTAACTTTTCTGGCACCTC 234
| |||||||||| ||||| ||||||
Sbjct 28152453 CTTGTGGTAACTCTTCTGACACCTC 28152477
>seq4
Length=46648546
Score = 84.2 bits (92), Expect = 4e-14
Identities = 136/193 (70%), Gaps = 6/193 (3%)
Strand=Plus/Minus
Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91
|||||||||||||||||| | | ||||| | || |||| ||||||||| || | ||
Sbjct 33764300 CATCAGTAGGGTAAAACTGCCATATCTCACCATGGCCTAATGCCAGCTCACATT-CTTAG 33764242
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151
|||||||| ||||| ||| | || ||| | ||||| | | | |||| ||
Sbjct 33764241 TAGTGGGTAAACAACCCAGCATTTGATGAAGTAGGCTTC---ACAACA--AAGATCCAGT 33764187
Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211
||| |||| |||| | || ||||| ||| |||||| ||||| ||| | ||| |
Sbjct 33764186 ATCTTAGGACTAAAATGTGGAGTTGCTATAAACACTTGGCCACCACATTCCAATCATCAC 33764127
Query 212 TGTGGTAACTTTT 224
||||||||| |||
Sbjct 33764126 TGTGGTAACCTTT 33764114
>seq26
Length=26634289
Score = 77.0 bits (84), Expect = 6e-12
Identities = 75/96 (78%), Gaps = 3/96 (3%)
Strand=Plus/Minus
Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94
|||| ||||| | ||||| ||||||| |||| |||||||||||| |||||| | |
Sbjct 26515051 CAGTGGGGTACAGCTAACTTGTCTCACAGTGGTCCAAACCCAGCTCATGTTCCC---TGG 26514995
Query 95 TGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130
||| |||||| |||||| || ||||||||||||
Sbjct 26514994 GGGGGGAACAACCCAACGTTTGGTGAATTCTGCTTC 26514959
Score = 77.0 bits (84), Expect = 6e-12
Identities = 75/96 (78%), Gaps = 3/96 (3%)
Strand=Plus/Minus
Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94
|||| ||||| | ||||| ||||||| |||| |||||||||||| |||||| | |
Sbjct 26516104 CAGTGGGGTACAGCTAACTTGTCTCACAGTGGTCCAAACCCAGCTCATGTTCCC---TGG 26516048
Query 95 TGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130
||| |||||| |||||| || ||||||||||||
Sbjct 26516047 GGGGGGAACAACCCAACGTTTGGTGAATTCTGCTTC 26516012
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 853969578912
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |