Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq160 246 5e-63 seq9 183 5e-44 seq4 84.2 4e-14 seq26 77.0 6e-12 >seq160 Length=2410589 Score = 246 bits (272), Expect = 5e-63 Identities = 212/261 (81%), Gaps = 1/261 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| | | |||||||| ||||||||||||||| Sbjct 2352535 TCATCAGTAGGGTAAAACTAACCTGTCTCACCAGGATCTAAACCTAGCTCACGTTCCCTA 2352594 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||| |||||||||| |||| |||||||||||| ||||||| |||||| | Sbjct 2352595 TTAGCAGGTAAACAATCCAAGGCTTGGTGAATTCTGCTTCACAGTGATAGGGAGAGCCTA 2352654 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||| |||||||||||||| | || ||||| ||| |||||||||||||||||| |||||| Sbjct 2352655 AATCAAAGGATCAAAAAGCGA-GTTGCTATAAACACTTGGCTGCCACAAGCCAATTATCC 2352713 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||| | |||||| || | ||| |||| | ||||||| ||| Sbjct 2352714 CTGTGGTAACTTTTCCGACACCTCCTGCTTAAAACCCAAAGGGTCAGAAGGATCATGAGG 2352773 Query 271 CCACACTTTCATGGTTTGTAT 291 | |||||||||| | ||| Sbjct 2352774 CTGTGCTTTCATGGTCTTTAT 2352794 >seq9 Length=38035322 Score = 183 bits (202), Expect = 5e-44 Identities = 164/205 (80%), Gaps = 3/205 (1%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||| ||||||||||||| || ||||| ||||||| ||| ||| | |||||||| Sbjct 28152273 ATCAGTAAAGTAAAACTAACCTATCCCATGATGGTCTAATCCCGACTCTCCCTCCCTATT 28152332 Query 93 AGTGGGTGAACAAT---CCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 | || |||| ||| |||| |||| ||||||| |||| ||||||||||||| | Sbjct 28152333 AATGAATGAATAATTCACCAATGCTTGGTGAATTCTACTTCACAATGATAGGAAGAGACA 28152392 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 | || |||||||| |||||||| | | |||||||| ||||| |||||||||||||||| Sbjct 28152393 ATTTCAAAGGATCATAAAGCAACATTGTTATGAACGTTTGGCCACCACAAGCCAGTTATC 28152452 Query 210 CCTGTGGTAACTTTTCTGGCACCTC 234 | |||||||||| ||||| |||||| Sbjct 28152453 CTTGTGGTAACTCTTCTGACACCTC 28152477 >seq4 Length=46648546 Score = 84.2 bits (92), Expect = 4e-14 Identities = 136/193 (70%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 |||||||||||||||||| | | ||||| | || |||| ||||||||| || | || Sbjct 33764300 CATCAGTAGGGTAAAACTGCCATATCTCACCATGGCCTAATGCCAGCTCACATT-CTTAG 33764242 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||| ||||| ||| | || ||| | ||||| | | | |||| || Sbjct 33764241 TAGTGGGTAAACAACCCAGCATTTGATGAAGTAGGCTTC---ACAACA--AAGATCCAGT 33764187 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 ||| |||| |||| | || ||||| ||| |||||| ||||| ||| | ||| | Sbjct 33764186 ATCTTAGGACTAAAATGTGGAGTTGCTATAAACACTTGGCCACCACATTCCAATCATCAC 33764127 Query 212 TGTGGTAACTTTT 224 ||||||||| ||| Sbjct 33764126 TGTGGTAACCTTT 33764114 >seq26 Length=26634289 Score = 77.0 bits (84), Expect = 6e-12 Identities = 75/96 (78%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94 |||| ||||| | ||||| ||||||| |||| |||||||||||| |||||| | | Sbjct 26515051 CAGTGGGGTACAGCTAACTTGTCTCACAGTGGTCCAAACCCAGCTCATGTTCCC---TGG 26514995 Query 95 TGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||| |||||| |||||| || |||||||||||| Sbjct 26514994 GGGGGGAACAACCCAACGTTTGGTGAATTCTGCTTC 26514959 Score = 77.0 bits (84), Expect = 6e-12 Identities = 75/96 (78%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94 |||| ||||| | ||||| ||||||| |||| |||||||||||| |||||| | | Sbjct 26516104 CAGTGGGGTACAGCTAACTTGTCTCACAGTGGTCCAAACCCAGCTCATGTTCCC---TGG 26516048 Query 95 TGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||| |||||| |||||| || |||||||||||| Sbjct 26516047 GGGGGGAACAACCCAACGTTTGGTGAATTCTGCTTC 26516012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853969578912