Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20pardus_20[refseq_20GCF_5F001857705.1_202016-11-16] 50,377 sequences; 2,578,019,207 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq160 351 3e-94 seq8 298 2e-78 seq221 208 2e-51 seq43 199 1e-48 seq12 165 3e-38 seq21 163 9e-38 seq75 159 1e-36 seq85 100 9e-19 seq22 89.7 2e-15 seq10 75.2 4e-11 >seq160 Length=2410589 Score = 351 bits (388), Expect = 3e-94 Identities = 256/297 (86%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||| ||||||||||||||||||| ||| |||||| || | |||||||||||||||||| Sbjct 2353121 CTCCTACTTATTCTACACCTCTCATGTCTCTTCACACAGACAGACTAGAGTCAAGCTCAA 2353180 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||| || |||||||| |||||| ||||||||||||||||||| || | Sbjct 2353181 CAGGGTCTTCTTTCTCCACTGATTCCACCAAGCTGGTTCCCTTGGCTGTGGTTTTACTGG 2353240 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 | ||| | |||||||||| ||||||| ||| ||||||||||| | |||||||||| ||| Sbjct 2353241 AAAGTGGGTAGGGACAGTAGGAATCTTGTTCATCCATTCATGTACATCACTAATTAAATG 2353300 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 | ||||||| ||||||||||||||||||||||||||||||| | ||||||| || | Sbjct 2353301 AGGAGGCATCTGGCTACCTTAAGAGAGTCATAGTTACTCCCTTCCTTTACCCATGCGTCA 2353360 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||| |||| |||| ||||||||||||||||||| | |||| Sbjct 2353361 TTGAATTTCTTCACTTTGATGTTCAAAGCATTGGGCAGAAATCACATTGCCTTAACA 2353417 Score = 87.8 bits (96), Expect = 6e-15 Identities = 83/106 (78%), Gaps = 4/106 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| ||||||| |||| ||| | ||||||||||||||||| ||| Sbjct 2352827 CTTCTGCTCCATGGGAGGTTTCTGTCCTCCCTGAATTCCCCTTAGGACACCTGCATTACT 2352886 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 |||| |||| ||| || || ||||||||||||||| | | ||| Sbjct 2352887 GTTTGACAGGTGTACCACC----CCAAACTCCCCACCTCATACTGT 2352928 >seq8 Length=41820603 Score = 298 bits (330), Expect = 2e-78 Identities = 204/230 (89%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | | ||||||||||||| |||| Sbjct 20930033 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCATGCCAGACTAGAGTCAAGGTCAA 20930092 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||| |||||||||||||||| |||||| ||||| ||||||| || | Sbjct 20930093 CAGGGTCTTCTTTCCCCCCTGATTCCGCCAAGCCTGTTCCCCTGGCTTTGGTTTCACTGG 20930152 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||| ||| ||| |||||||| |||||||||||| || Sbjct 20930153 ATAGTAGGTAGGGACAGTGGGAATCTTGTTCATCTATTCATGCATGTCACTAATTAGGTG 20930212 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466 | |||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 20930213 ATGAGGCATTTGGCTACCTTAAGAGAGTCATATTTACTCCCGAAATTTAC 20930262 >seq221 Length=1025098 Score = 208 bits (230), Expect = 2e-51 Identities = 165/197 (84%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 337 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCA 396 ||||||| | | ||| || |||||||| ||||||||| ||| |||||||| ||||||||| Sbjct 145161 CTTGGCTATAGCTTCTCTGGATAGTAGGTAGGGACAGCGGGTATCTCGTTCATCCATTCA 145220 Query 397 TGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 456 ||| | |||||||||||| || |||||||||| |||||| | | ||| ||||||| ||| Sbjct 145221 TGCATGGCACTAATTAGATAACAAGGCATTTGGTTACCTTGAAAAAGTAATAGTTATTCC 145280 Query 457 CGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAA 516 | || |||| | |||| | ||||||||||||||||||||||||||| ||||||||| || Sbjct 145281 CACCATTTA-CTGCGCCTCATTGAATTTCTTCACTTTGACATTCAGAACACTGGGCAAAA 145339 Query 517 ATCACATTGCGTCAACA 533 |||||||| |||||| Sbjct 145340 GTCACATTGTATCAACA 145356 >seq43 Length=20825300 Score = 199 bits (220), Expect = 1e-48 Identities = 194/257 (75%), Gaps = 26/257 (10%) Strand=Plus/Plus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||| ||||| |||||||||||| ||||| | |||||||||| || ||||||| | | Sbjct 17491467 GACTGGAGTCCAGCTCAACAGGGCCTTCTACCTTCGCTGATTCCACCGGGCCCGTTGCTT 17491526 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 |||||| |||||| || | |||||| ||||||||| |||||| || | ||||||||||| Sbjct 17491527 TGGCTGCGGTTTCACTGGGTAGTAGGTAGGGACAGGGGGAATGTCCCTCATCCATTCATG 17491586 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA--------------------- 437 |||||||||||||||||| ||||| ||||||||| || Sbjct 17491587 AGCGTCACTAATTAGATGATGAGGCTTTTGGCTACTGTAAGAGAGTCATAGCAAAAAAGA 17491646 Query 438 -----AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 ||||||||||||||| ||| || ||||||| | |||| |||||||||||||||| Sbjct 17491647 GAGAGAGAGAGTCATAGTTATTCCTGCTGTTTACCTGAGCTTCATTGAATTTCTTCACTT 17491706 Query 493 TGACATTCAGAGCACTG 509 | |||||||| ||||| Sbjct 17491707 CGGCATTCAGATCACTG 17491723 >seq12 Length=36249422 Score = 165 bits (182), Expect = 3e-38 Identities = 178/229 (78%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 ||| | ||||||||| || | |||| ||||||| |||||||||||||||||| Sbjct 283198 AACTGAGTCTTCTTTGACCTCAGATTTTTCCAAGCCA-TTCCCTTGGCTGTGGTTTTATC 283256 Query 355 AGATAGTAGATAGGGACAGTGGGAA-TCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 | ||| ||| || |||||| | || | || || ||| ||||||| | || |||||||| Sbjct 283257 AAATAATAGGTAAAGACAGTAGAAAATGTCATTCATCTGTTCATGCACATCTCTAATTAG 283316 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC-GCCGTTTACCCGCGC 472 |||||| ||| |||||||||||||||||||||||||||| ||| | |||| | || Sbjct 283317 ATGACGGAGCACTTGGCTACCTTAAGAGAGTCATAGTTACACCCATCAATTTATATGGGC 283376 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACT-GGGCAGAAATCA 520 || |||||||||||||||||||||||||| | || |||| |||||| Sbjct 283377 TTCACTGAATTTCTTCACTTTGACATTCAGAACGCTAAGGCA-AAATCA 283424 >seq21 Length=29197815 Score = 163 bits (180), Expect = 9e-38 Identities = 171/220 (78%), Gaps = 11/220 (5%) Strand=Plus/Plus Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||| ||||||| ||||||| ||||| ||||||| ||||||| ||| ||| | Sbjct 19769279 CTTTCCCTTCTGATTCTGCCAAGCTAGTTCC-TTGGCTGCA-TTTCGCTGAATACTAGGT 19769336 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 ||| | |||||| |||| ||| || |||||| || || || ||| |||| |||| || Sbjct 19769337 AGGAATAGTGGGGATCTTGTTCCTCTATTCATAGGCACCATTATTTACATGATGAGGTAT 19769396 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCG----CCGTTTACCCGCGCTTGGTTGAA 481 ||||||||| | |||| | ||| |||||||| || | ||| | ||| |||| Sbjct 19769397 TTGGCTACCCT--GAGAATTATACTTACTCCCTGATACCCT---CCCTCACTTCACTGAA 19769451 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 |||||||||||||||||||||||||||||||||||||||| Sbjct 19769452 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 19769491 >seq75 Length=11179515 Score = 159 bits (176), Expect = 1e-36 Identities = 111/126 (88%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465 || ||||||||| |||||| |||| ||||||||||| || |||||||||||||| |||| Sbjct 5862082 CTGATTAGATGATGAGGCAATTGGTTACCTTAAGAGCGTTGTAGTTACTCCCGCCATTTA 5862023 Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 525 || |||||| | |||||||||||||||||||||||||||||||||||||||||| || Sbjct 5862022 CCTGCGCTTCATCGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAGATCA 5861963 Query 526 CGTCAA 531 |||||| Sbjct 5861962 CGTCAA 5861957 >seq85 Length=9706175 Score = 100 bits (110), Expect = 9e-19 Identities = 92/115 (80%), Gaps = 5/115 (4%) Strand=Plus/Plus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||||||| |||| |||| ||||||||| ||| ||||||| | ||||| | |||||| Sbjct 2582913 GACTAGAGGCAAGATCAATAGGGTCTTC----CCCACTGATTC-GTCAAGCTCCTTCCCT 2582967 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCAT 393 ||||||||||||| || |||||||| | ||||||| |||| || || ||| || Sbjct 2582968 TGGCTGTGGTTTCACTGGATAGTAGGAACAGACAGTGAGAATTTCATTCATCTAT 2583022 >seq22 Length=28302130 Score = 89.7 bits (98), Expect = 2e-15 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || ||||||||| |||| ||||| |||| ||||| | | | |||||| ||||||||||| Sbjct 16251793 CTTCCACTTATTTTACATCTCTCGTGTCACTTCACCATGCCAGACTAGGGTCAAGCTCAA 16251734 Query 297 CAGGGTCTTCTTTCCCC 313 ||||||||||||||||| Sbjct 16251733 CAGGGTCTTCTTTCCCC 16251717 Score = 87.8 bits (96), Expect = 6e-15 Identities = 74/90 (82%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 443 GTCATAGTTACTCCCGCCGTT-TACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCA 501 || ||||||| ||| || ||| ||| | |||| ||||||||| |||||||||||| Sbjct 16251678 GTTATAGTTATTCCTGCTGTTGTACTCAGGCTTCACTGAATTTCTCCACTTTGACATTTG 16251619 Query 502 GAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||| ||||||||||||||||||||| |||| Sbjct 16251618 GAGTACTGGGCAGAAATCACATTGCATCAA 16251589 >seq10 Length=37574898 Score = 75.2 bits (82), Expect = 4e-11 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 |||| ||||||||| || | || | || ||||||| | ||| |||||| ||||||||| Sbjct 10996971 CTTAGGAGAGTCATGGTAATTCTCACCATTTACCCACACTTCAATGAATTACTTCACTTT 10997030 Query 494 GACATTCAGAGCACTG 509 |||||||||||| ||| Sbjct 10997031 GACATTCAGAGCTCTG 10997046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634376235296