Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq744 102 1e-19 seq702 100 5e-19 >seq744 Length=468425 Score = 102 bits (112), Expect = 1e-19 Identities = 178/256 (70%), Gaps = 5/256 (2%) Strand=Plus/Minus Query 49 CTGGGTGTGCCGGGGAGCCAG-GACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGG 107 ||| |||| || || ||| | | | |||||| ||||| ||||||| ||||||||||||| Sbjct 108596 CTGAGTGTCCCATGGGGCCTGAGGCATTTACTCTGAAACAATTAGAATGTTCAAAGCAGG 108537 Query 108 C---CTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG 164 | | | ||||| ||| |||||||| || || ||| ||| |||||||| || Sbjct 108536 CAGGAGTCACATAGATACAGAAGCCAGGAATAATGGAGTAAGAC-TGCAGTTCTATTCTG 108478 Query 165 TTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATT 224 ||||||||| | || | | || ||||| ||| |||| | ||| | | |||| | Sbjct 108477 TTGGTTTCTGGAACTGAGGGCATAATTAAGAGGAATAGCCAGGGATATTCATATTGCAGC 108418 Query 225 GTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGG 284 | |||||||||||||||| | | |||| || | | ||| || ||||| Sbjct 108417 ACTACAGGTGAAATTCTTGGACTGGTGCAAGATGGACAAGAGTAAAATTATTTGCCAAGA 108358 Query 285 ATGTTTTCATTAATCA 300 |||||||||||| ||| Sbjct 108357 ATGTTTTCATTACTCA 108342 >seq702 Length=8706000 Score = 100 bits (110), Expect = 5e-19 Identities = 159/226 (70%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATG 131 ||||||||| ||||||||||||||| | ||||| ||| | || | || || Sbjct 7958439 TTTACTTTGGAAAAATTAGAGTGTTTGATGCAGGATCAAGCTGCTGCATTCGGCAG-ATA 7958497 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 | |||||||||||||| | |||||| |||||||| || | | || | || |||||| Sbjct 7958498 CACTAATAGAATAGGACTTCTGGTTCTGCTTTGTTGGCTTTTGGAACTGAAGTCATGATT 7958557 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 || | |||| ||| |||| | | ||| | ||| ||||||||||||| |||| | | Sbjct 7958558 AAAAAGGATGGTCCTGGGTATTGGAATTAAGTTGCTAGAGGTGAAATTCGTGGAACTTTG 7958617 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAA 297 |||| || | | | |||| || ||||| || |||| ||||| Sbjct 7958618 CAAGATGGACCAGAGTGGAAGCATTTGCCAAGAATATTTTTATTAA 7958663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915186464192