Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq648 158 2e-36 seq704 105 1e-20 seq744 80.6 4e-13 >seq648 Length=20061788 Score = 158 bits (174), Expect = 2e-36 Identities = 95/100 (95%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 13457692 GTCTCATTCGTTATTGGAATTAACCAGACAAATCACTCCACCAGCTAAGAACGGCCATGC 13457633 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| ||||||||||||||| |||||||||||| Sbjct 13457632 ACCACCACCCACAGAATCAAGAAAGAGATATCAATCTGTC 13457593 >seq704 Length=970608 Score = 105 bits (116), Expect = 1e-20 Identities = 168/237 (71%), Gaps = 12/237 (5%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGG-CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73 |||| |||||| | |||| | |||||| ||||||||||| |||| ||||| | |||| Sbjct 940656 GTCACTGTAGCACATGTGCAGTCCCAGA-CATCTAAGGGCGTCACCAACCTGCTGTTGCT 940598 Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 ||| || | |||| | ||| | |||||||| | || | | | || ||| Sbjct 940597 --AAATCTCGGATAGCTGAACACCACTTGTCCCTCTCAAGAGTTTGAAA--ATGCAGAGT 940542 Query 134 CG------ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | ||| ||| |||||| | | ||||| |||| || |||||| ||||||| Sbjct 940541 TGGGGCTCATGTAACTAGTTAGCATGCCAGAGTCTCATTCGATACTGGAATTTACCAGAC 940482 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 ||||| |||||||| |||||| ||||| ||||| ||||| | ||||||||||||| Sbjct 940481 AAATCCCTCCACCACGTAAGAATGGCCACACACCAACACCCTTGGAATCAAGAAAGA 940425 >seq744 Length=468425 Score = 80.6 bits (88), Expect = 4e-13 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | | || ||| ||||| | |||||||||| ||||| |||||| | Sbjct 93209 CTAGTTAGCATGCCAGAGCCTTGTTTGTTATTGAAATTAACCAGGCAAATTGCTCCACAA 93268 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 ||||| | ||||||| ||||||| || |||| |||||||||||| Sbjct 93269 ACTAAAACTGGCCATGTACCACCATGCACAGAAATGGGAAAGAGCTATC 93317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796788583599