Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq1066 473 4e-131
seq653 336 7e-90
seq580 293 8e-77
seq1396 217 5e-54
seq947 192 2e-46
seq1042 161 3e-37
seq725 159 1e-36
seq607 158 4e-36
seq635 95.1 4e-17
seq599 89.7 2e-15
seq502 75.2 4e-11
>seq1066
Length=157244
Score = 473 bits (524), Expect = 4e-131
Identities = 283/297 (95%), Gaps = 0/297 (0%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||||||||||||||||| ||| ||||| | | ||||||||||||||||||
Sbjct 149051 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 148992
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 148991 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 148932
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 148931 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 148872
Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148871 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCA 148812
Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 148811 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 148755
>seq653
Length=2310022
Score = 336 bits (372), Expect = 7e-90
Identities = 253/297 (85%), Gaps = 4/297 (1%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||| ||||||||||||||||||| ||| |||||| || |||||||||||||||||
Sbjct 50786 CTCCTACTTATTCTACACCTCTCATGTCTCTTCACACAG----ACTAGAGTCAAGCTCAA 50731
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|||||||||||||| || |||||||| |||||| ||||||||||||||||||| || |
Sbjct 50730 CAGGGTCTTCTTTCTCCACTGATTCCACCAAGCTGGTTCCCTTGGCTGTGGTTTTACTGG 50671
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
| ||| | |||||||||| ||||||| ||| ||||||||||| | |||||||||| |||
Sbjct 50670 AAAGTGGGTAGGGACAGTAGGAATCTTGTTCATCCATTCATGTACATCACTAATTAAATG 50611
Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476
| ||||||| ||||||||||||||||||| ||||||||||| | ||||||| || |
Sbjct 50610 AGGAGGCATCTGGCTACCTTAAGAGAGTCCTAGTTACTCCCTTCCTTTACCCATGCGTCA 50551
Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||| |||| |||| ||||||||||||||||||| | ||||
Sbjct 50550 TTGAATTTCTTCACTTTGATGTTCAAAGCATTGGGCAGAAATCACATTGCCTTAACA 50494
Score = 87.8 bits (96), Expect = 6e-15
Identities = 83/106 (78%), Gaps = 4/106 (4%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| | |||| ||||||| |||| ||| | ||||||||||||||||| |||
Sbjct 51097 CTTCTGCTCCATGGGAGGTTTCTGTCCTCCCTGAATTCCCCTTAGGACACCTGCATTACT 51038
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112
|||| |||| ||| || || ||||||||||||||| | | |||
Sbjct 51037 GTTTGACAGGTGTACCACC----CCAAACTCCCCACCTCATACTGT 50996
>seq580
Length=9781741
Score = 293 bits (324), Expect = 8e-77
Identities = 203/230 (88%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||||||||||||||||| ||| ||||| | | | ||||||||||||| ||||
Sbjct 9480061 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCATGCCAGACTAGAGTCAAGGTCAA 9480002
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
||||||||||||||||| |||||||| ||||||| |||||| ||||| ||||||| || |
Sbjct 9480001 CAGGGTCTTCTTTCCCCCCTGATTCCACCAAGCCTGTTCCCCTGGCTTTGGTTTCACTGG 9479942
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||||||| |||||||||||||||||| ||| ||| |||||||| |||||||||||| ||
Sbjct 9479941 ATAGTAGGTAGGGACAGTGGGAATCTTGTTCATCTATTCATGCATGTCACTAATTAGGTG 9479882
Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466
| |||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 9479881 ATGAGGCATTTGGCTACCTTAAGAGAGTCATATTTACTCCCGAAATTTAC 9479832
>seq1396
Length=18872899
Score = 217 bits (240), Expect = 5e-54
Identities = 167/197 (85%), Gaps = 1/197 (1%)
Strand=Plus/Plus
Query 337 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCA 396
||||||| | ||||| || |||||||| ||||||||| ||| |||||||| |||||||||
Sbjct 17794269 CTTGGCTATAGTTTCTCTGGATAGTAGGTAGGGACAGCGGGTATCTCGTTCATCCATTCA 17794328
Query 397 TGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 456
||| | |||||||||||| || ||||||||||||||||| | | ||| ||||||| |||
Sbjct 17794329 TGCATGGCACTAATTAGATAACAAGGCATTTGGCTACCTTGAAAAAGTAATAGTTATTCC 17794388
Query 457 CGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAA 516
| || |||| | |||| | ||||||||||||||||||||||||||| ||||||||| ||
Sbjct 17794389 CACCATTTA-CTGCGCCTCATTGAATTTCTTCACTTTGACATTCAGAACACTGGGCAAAA 17794447
Query 517 ATCACATTGCGTCAACA 533
|||||||| ||||||
Sbjct 17794448 GTCACATTGTATCAACA 17794464
>seq947
Length=4576000
Score = 192 bits (212), Expect = 2e-46
Identities = 145/171 (85%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338
|||| ||||| |||||||||||| ||||| | |||||||||| || ||||||| | |
Sbjct 689853 GACTGGAGTCCAGCTCAACAGGGCCTTCTACCTTCGCTGATTCCACCGGGCCCGTTGCTT 689912
Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398
||||||||||||| || | |||||| ||||||||| |||||| || | |||||||||||
Sbjct 689913 TGGCTGTGGTTTCACTGGGTAGTAGGTAGGGACAGGGGGAATGTCCCTCATCCATTCATG 689972
Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG 449
|||||||||||||||||| ||||| ||||||||| ||||||||||||||
Sbjct 689973 AGCGTCACTAATTAGATGATGAGGCTTTTGGCTACTGTAAGAGAGTCATAG 690023
>seq1042
Length=21440000
Score = 161 bits (178), Expect = 3e-37
Identities = 177/229 (77%), Gaps = 5/229 (2%)
Strand=Plus/Minus
Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354
||| | ||||||||| || | |||| ||||||| ||||||||||||||||||
Sbjct 20063217 AACTGAGTCTTCTTTGACCTCAGATTTTTCCAAGCCA-TTCCCTTGGCTGTGGTTTTATC 20063159
Query 355 AGATAGTAGATAGGGACAGTGGGAA-TCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413
| ||| ||| || |||||| | || | || || ||| ||||||| | || ||||||||
Sbjct 20063158 AAATAATAGGTAAAGACAGTAGAAAATGTCATTCATCTGTTCATGCACATCTCTAATTAG 20063099
Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC-GCCGTTTACCCGCGC 472
|||||| ||| |||||||||||||||||||| ||||||| ||| | |||| | ||
Sbjct 20063098 ATGACGGAGCACTTGGCTACCTTAAGAGAGTCGTAGTTACACCCATCAATTTATATGGGC 20063039
Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACT-GGGCAGAAATCA 520
|| |||||||||||||||||||||||||| | || |||| ||||||
Sbjct 20063038 TTCACTGAATTTCTTCACTTTGACATTCAGAACGCTAAGGCA-AAATCA 20062991
>seq725
Length=5005524
Score = 159 bits (176), Expect = 1e-36
Identities = 111/126 (88%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465
|| ||||||||| |||||| |||| ||||||||||| || |||||||||||||| ||||
Sbjct 1765839 CTGATTAGATGATGAGGCAATTGGTTACCTTAAGAGCGTTGTAGTTACTCCCGCCATTTA 1765898
Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 525
|| |||||| | |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1765899 CCTGCGCTTCATCGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAGATCA 1765958
Query 526 CGTCAA 531
||||||
Sbjct 1765959 CGTCAA 1765964
>seq607
Length=5618934
Score = 158 bits (174), Expect = 4e-36
Identities = 171/221 (77%), Gaps = 12/221 (5%)
Strand=Plus/Minus
Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365
||||||| ||||||| ||||||| ||||| ||||||| ||||||| ||| ||| |
Sbjct 2864612 CTTTCCCTTCTGATTCTGCCAAGCTAGTTCC-TTGGCTGCA-TTTCGCTGAATACTAGGT 2864555
Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425
||| | |||||| |||| ||| || |||||| || || || ||| |||| |||| ||
Sbjct 2864554 AGGAATAGTGGGGATCTTGTTCCTCTATTCATAGGCACCATTATTTACATGATGAGGTAT 2864495
Query 426 TTGGCTACCTTAAGAGAGTCATAGTTA-CTCCCG----CCGTTTACCCGCGCTTGGTTGA 480
||||||||| | |||| | ||| ||| ||||| || | ||| | ||| |||
Sbjct 2864494 TTGGCTACCCT--GAGAATTATACTTAACTCCCTGATACCCT---CCCTCACTTCACTGA 2864440
Query 481 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521
|||||||||||||||||||||||||||||||||||||||||
Sbjct 2864439 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 2864399
>seq635
Length=6210000
Score = 95.1 bits (104), Expect = 4e-17
Identities = 91/115 (79%), Gaps = 5/115 (4%)
Strand=Plus/Minus
Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338
|||||||| |||| |||| ||||||||| ||| |||||| | ||||| | ||||||
Sbjct 2826580 GACTAGAGGCAAGATCAATAGGGTCTTC----CCCACTGATTT-GTCAAGCTCCTTCCCT 2826526
Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCAT 393
||||||||||||| || |||||||| | ||||||| |||| || || ||| ||
Sbjct 2826525 TGGCTGTGGTTTCACTGGATAGTAGGAACAGACAGTGAGAATTTCATTCATCTAT 2826471
>seq599
Length=2426744
Score = 89.7 bits (98), Expect = 2e-15
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|| ||||||||| |||| ||||| |||| ||||| | | | |||||| |||||||||||
Sbjct 1224348 CTTCCACTTATTTTACATCTCTCGTGTCACTTCACCATGCCAGACTAGGGTCAAGCTCAA 1224289
Query 297 CAGGGTCTTCTTTCCCC 313
|||||||||||||||||
Sbjct 1224288 CAGGGTCTTCTTTCCCC 1224272
Score = 75.2 bits (82), Expect = 4e-11
Identities = 49/54 (91%), Gaps = 0/54 (0%)
Strand=Plus/Minus
Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531
||||||||| |||||||||||| ||| ||||||||||||||||||||| ||||
Sbjct 1224174 TGAATTTCTCCACTTTGACATTTGGAGTACTGGGCAGAAATCACATTGCATCAA 1224121
>seq502
Length=12901905
Score = 75.2 bits (82), Expect = 4e-11
Identities = 62/76 (82%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493
|||| ||||||||| || | || | || ||||||| | ||| |||||| |||||||||
Sbjct 5317293 CTTAGGAGAGTCATGGTAATTCTCACCATTTACCCACACTTCAATGAATTACTTCACTTT 5317234
Query 494 GACATTCAGAGCACTG 509
|||||||||||| |||
Sbjct 5317233 GACATTCAGAGCTCTG 5317218
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635175815392
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |