Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1066 473 4e-131 seq653 336 7e-90 seq580 293 8e-77 seq1396 217 5e-54 seq947 192 2e-46 seq1042 161 3e-37 seq725 159 1e-36 seq607 158 4e-36 seq635 95.1 4e-17 seq599 89.7 2e-15 seq502 75.2 4e-11 >seq1066 Length=157244 Score = 473 bits (524), Expect = 4e-131 Identities = 283/297 (95%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 149051 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 148992 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 148991 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 148932 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 148931 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 148872 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 148871 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCA 148812 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 148811 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 148755 >seq653 Length=2310022 Score = 336 bits (372), Expect = 7e-90 Identities = 253/297 (85%), Gaps = 4/297 (1%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||| ||||||||||||||||||| ||| |||||| || ||||||||||||||||| Sbjct 50786 CTCCTACTTATTCTACACCTCTCATGTCTCTTCACACAG----ACTAGAGTCAAGCTCAA 50731 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||| || |||||||| |||||| ||||||||||||||||||| || | Sbjct 50730 CAGGGTCTTCTTTCTCCACTGATTCCACCAAGCTGGTTCCCTTGGCTGTGGTTTTACTGG 50671 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 | ||| | |||||||||| ||||||| ||| ||||||||||| | |||||||||| ||| Sbjct 50670 AAAGTGGGTAGGGACAGTAGGAATCTTGTTCATCCATTCATGTACATCACTAATTAAATG 50611 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 | ||||||| ||||||||||||||||||| ||||||||||| | ||||||| || | Sbjct 50610 AGGAGGCATCTGGCTACCTTAAGAGAGTCCTAGTTACTCCCTTCCTTTACCCATGCGTCA 50551 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||| |||| |||| ||||||||||||||||||| | |||| Sbjct 50550 TTGAATTTCTTCACTTTGATGTTCAAAGCATTGGGCAGAAATCACATTGCCTTAACA 50494 Score = 87.8 bits (96), Expect = 6e-15 Identities = 83/106 (78%), Gaps = 4/106 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| ||||||| |||| ||| | ||||||||||||||||| ||| Sbjct 51097 CTTCTGCTCCATGGGAGGTTTCTGTCCTCCCTGAATTCCCCTTAGGACACCTGCATTACT 51038 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 |||| |||| ||| || || ||||||||||||||| | | ||| Sbjct 51037 GTTTGACAGGTGTACCACC----CCAAACTCCCCACCTCATACTGT 50996 >seq580 Length=9781741 Score = 293 bits (324), Expect = 8e-77 Identities = 203/230 (88%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | | ||||||||||||| |||| Sbjct 9480061 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCATGCCAGACTAGAGTCAAGGTCAA 9480002 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||| |||||||| ||||||| |||||| ||||| ||||||| || | Sbjct 9480001 CAGGGTCTTCTTTCCCCCCTGATTCCACCAAGCCTGTTCCCCTGGCTTTGGTTTCACTGG 9479942 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||| ||| ||| |||||||| |||||||||||| || Sbjct 9479941 ATAGTAGGTAGGGACAGTGGGAATCTTGTTCATCTATTCATGCATGTCACTAATTAGGTG 9479882 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466 | |||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 9479881 ATGAGGCATTTGGCTACCTTAAGAGAGTCATATTTACTCCCGAAATTTAC 9479832 >seq1396 Length=18872899 Score = 217 bits (240), Expect = 5e-54 Identities = 167/197 (85%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 337 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCA 396 ||||||| | ||||| || |||||||| ||||||||| ||| |||||||| ||||||||| Sbjct 17794269 CTTGGCTATAGTTTCTCTGGATAGTAGGTAGGGACAGCGGGTATCTCGTTCATCCATTCA 17794328 Query 397 TGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 456 ||| | |||||||||||| || ||||||||||||||||| | | ||| ||||||| ||| Sbjct 17794329 TGCATGGCACTAATTAGATAACAAGGCATTTGGCTACCTTGAAAAAGTAATAGTTATTCC 17794388 Query 457 CGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAA 516 | || |||| | |||| | ||||||||||||||||||||||||||| ||||||||| || Sbjct 17794389 CACCATTTA-CTGCGCCTCATTGAATTTCTTCACTTTGACATTCAGAACACTGGGCAAAA 17794447 Query 517 ATCACATTGCGTCAACA 533 |||||||| |||||| Sbjct 17794448 GTCACATTGTATCAACA 17794464 >seq947 Length=4576000 Score = 192 bits (212), Expect = 2e-46 Identities = 145/171 (85%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||| ||||| |||||||||||| ||||| | |||||||||| || ||||||| | | Sbjct 689853 GACTGGAGTCCAGCTCAACAGGGCCTTCTACCTTCGCTGATTCCACCGGGCCCGTTGCTT 689912 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 ||||||||||||| || | |||||| ||||||||| |||||| || | ||||||||||| Sbjct 689913 TGGCTGTGGTTTCACTGGGTAGTAGGTAGGGACAGGGGGAATGTCCCTCATCCATTCATG 689972 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG 449 |||||||||||||||||| ||||| ||||||||| |||||||||||||| Sbjct 689973 AGCGTCACTAATTAGATGATGAGGCTTTTGGCTACTGTAAGAGAGTCATAG 690023 >seq1042 Length=21440000 Score = 161 bits (178), Expect = 3e-37 Identities = 177/229 (77%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 ||| | ||||||||| || | |||| ||||||| |||||||||||||||||| Sbjct 20063217 AACTGAGTCTTCTTTGACCTCAGATTTTTCCAAGCCA-TTCCCTTGGCTGTGGTTTTATC 20063159 Query 355 AGATAGTAGATAGGGACAGTGGGAA-TCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 | ||| ||| || |||||| | || | || || ||| ||||||| | || |||||||| Sbjct 20063158 AAATAATAGGTAAAGACAGTAGAAAATGTCATTCATCTGTTCATGCACATCTCTAATTAG 20063099 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC-GCCGTTTACCCGCGC 472 |||||| ||| |||||||||||||||||||| ||||||| ||| | |||| | || Sbjct 20063098 ATGACGGAGCACTTGGCTACCTTAAGAGAGTCGTAGTTACACCCATCAATTTATATGGGC 20063039 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACT-GGGCAGAAATCA 520 || |||||||||||||||||||||||||| | || |||| |||||| Sbjct 20063038 TTCACTGAATTTCTTCACTTTGACATTCAGAACGCTAAGGCA-AAATCA 20062991 >seq725 Length=5005524 Score = 159 bits (176), Expect = 1e-36 Identities = 111/126 (88%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465 || ||||||||| |||||| |||| ||||||||||| || |||||||||||||| |||| Sbjct 1765839 CTGATTAGATGATGAGGCAATTGGTTACCTTAAGAGCGTTGTAGTTACTCCCGCCATTTA 1765898 Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 525 || |||||| | |||||||||||||||||||||||||||||||||||||||||| || Sbjct 1765899 CCTGCGCTTCATCGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAGATCA 1765958 Query 526 CGTCAA 531 |||||| Sbjct 1765959 CGTCAA 1765964 >seq607 Length=5618934 Score = 158 bits (174), Expect = 4e-36 Identities = 171/221 (77%), Gaps = 12/221 (5%) Strand=Plus/Minus Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||| ||||||| ||||||| ||||| ||||||| ||||||| ||| ||| | Sbjct 2864612 CTTTCCCTTCTGATTCTGCCAAGCTAGTTCC-TTGGCTGCA-TTTCGCTGAATACTAGGT 2864555 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 ||| | |||||| |||| ||| || |||||| || || || ||| |||| |||| || Sbjct 2864554 AGGAATAGTGGGGATCTTGTTCCTCTATTCATAGGCACCATTATTTACATGATGAGGTAT 2864495 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTA-CTCCCG----CCGTTTACCCGCGCTTGGTTGA 480 ||||||||| | |||| | ||| ||| ||||| || | ||| | ||| ||| Sbjct 2864494 TTGGCTACCCT--GAGAATTATACTTAACTCCCTGATACCCT---CCCTCACTTCACTGA 2864440 Query 481 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 ||||||||||||||||||||||||||||||||||||||||| Sbjct 2864439 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 2864399 >seq635 Length=6210000 Score = 95.1 bits (104), Expect = 4e-17 Identities = 91/115 (79%), Gaps = 5/115 (4%) Strand=Plus/Minus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||||||| |||| |||| ||||||||| ||| |||||| | ||||| | |||||| Sbjct 2826580 GACTAGAGGCAAGATCAATAGGGTCTTC----CCCACTGATTT-GTCAAGCTCCTTCCCT 2826526 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCAT 393 ||||||||||||| || |||||||| | ||||||| |||| || || ||| || Sbjct 2826525 TGGCTGTGGTTTCACTGGATAGTAGGAACAGACAGTGAGAATTTCATTCATCTAT 2826471 >seq599 Length=2426744 Score = 89.7 bits (98), Expect = 2e-15 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || ||||||||| |||| ||||| |||| ||||| | | | |||||| ||||||||||| Sbjct 1224348 CTTCCACTTATTTTACATCTCTCGTGTCACTTCACCATGCCAGACTAGGGTCAAGCTCAA 1224289 Query 297 CAGGGTCTTCTTTCCCC 313 ||||||||||||||||| Sbjct 1224288 CAGGGTCTTCTTTCCCC 1224272 Score = 75.2 bits (82), Expect = 4e-11 Identities = 49/54 (91%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||||||| |||||||||||| ||| ||||||||||||||||||||| |||| Sbjct 1224174 TGAATTTCTCCACTTTGACATTTGGAGTACTGGGCAGAAATCACATTGCATCAA 1224121 >seq502 Length=12901905 Score = 75.2 bits (82), Expect = 4e-11 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 |||| ||||||||| || | || | || ||||||| | ||| |||||| ||||||||| Sbjct 5317293 CTTAGGAGAGTCATGGTAATTCTCACCATTTACCCACACTTCAATGAATTACTTCACTTT 5317234 Query 494 GACATTCAGAGCACTG 509 |||||||||||| ||| Sbjct 5317233 GACATTCAGAGCTCTG 5317218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635175815392