Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq722 111 1e-19 seq485 98.7 8e-16 seq1344 82.4 6e-11 >seq722 Length=1584642 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| |||||||| || ||||| || | |||| ||||| || Sbjct 1264902 GGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTTTTCCCAGGTTCTGCTG 1264961 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| |||| ||| ||||| | ||||||||| || || ||||| || Sbjct 1264962 GTTGCTCTTCCGATTACATGAATCTTTGTAGAACATGTACGGGGTACCTGTCTCTGTCTG 1265021 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 1265022 AGACTCAATGATGGCATACCAAAG 1265045 >seq485 Length=11789088 Score = 98.7 bits (108), Expect = 8e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 |||||||| || || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 151753 CAGGAGGTTCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 151694 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || ||||||||||| || Sbjct 151693 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACGTACATCAGAGA 151647 >seq1344 Length=6361600 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| || || | | ||| || |||||||| || || | || || |||||||| | | Sbjct 6040212 ATGAGCCACTGCTCCGAGAAAACCCTCGTCGCTTTGTCATCTTTCCTATCGAGTACCATG 6040271 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 ||||||||| ||||| || || ||||| |||||||||||||| | || ||||| Sbjct 6040272 ATATTTGGCAGATGTATAAGAAAGCGGAGGCTTCCTTCTGGACAGCCGAAGAGGT 6040326 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347 || || || ||||||||||||||||| ||||||||||| || |||| || |||||||| Sbjct 6041347 GAAGCCCGCTGTTTCTACGGCTTCCAAATTGCCATGGAAAACATCCATTCTGAGATGTAT 6041406 Query 61348 AGTGTTCTCATCGATACGTACAT 61370 ||| | ||||| || || ||||| Sbjct 6041407 AGTCTCCTCATTGACACTTACAT 6041429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397560833712560