Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01000056.1 Length=332 Score E Sequences producing significant alignments: (Bits) Value seq7320 82.4 1e-13 >seq7320 Length=4144 Score = 82.4 bits (90), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 7/229 (3%) Strand=Plus/Minus Query 105 GGATTTGCCTGCGGAAATCAACGTCTACACTCTTTAACCGGCTATTCCGTCAGCCGGCGG 164 |||||||||| ||| || |||||||| ||| |||||| ||| || ||||| | Sbjct 3246 GGATTTGCCTAAAGAA-TCT--GTCTACACGCTTGAACCGGGACATCCAACACCCGGCTG 3190 Query 165 CGTTGTCACTCCTGCGTCCCCACGTCACCCTCAAATGTAGTAACGGAATACTAACC-GTT 223 | | || || ||||||||| || | | | | ||| |||||| ||||| ||| Sbjct 3189 ACCTAAC-CTTCTCCGTCCCCACATCGCATTGTATAGAGGTACAGGAATATTAACCTGTT 3131 Query 224 TCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACCCGACTTACCCTGATCCGATTA 283 || ||||| | ||| || || |||||| | |||||| |||||| ||||| | Sbjct 3130 TC--CCATCAGCTACGCATCTCTGCCTCACCTTAGGGGCCGACTCACCCTGCGCCGATGA 3073 Query 284 GCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTTTCCCACCCCC 332 || || ||||||||||| | ||||||||||||| | || ||| ||| Sbjct 3072 ACGTTGCGCAGGAAACCTTGGGCTTTCGGCGAGGGAGCTTTTCACTCCC 3024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 959855433600