Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq8424 196 9e-48
seq11968 190 4e-46
seq8549 185 2e-44
seq7320 172 1e-40
seq6993 158 2e-36
seq9910 150 3e-34
seq5225 140 6e-31
seq10654 127 4e-27
>seq8424
Length=263062
Score = 196 bits (216), Expect = 9e-48
Identities = 248/335 (74%), Gaps = 12/335 (4%)
Strand=Plus/Minus
Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63
||||| ||||| |||||| || |||||| ||| |||||||||| || |||| |
Sbjct 261355 CCCGATGAGGGGAGTGAAACAGTACCTGAAACCGGATGCCTACAAGCAGTGGGAGG---G 261299
Query 64 TGATTCGG---TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGC 120
| || | |||| |||| ||| |||||||||| | || || ||||| || | |||
Sbjct 261298 TCCTTGAGACCTGACCGCGTACCTCTTGCATAATGGGTCTGTGACTTAGT-GTATCAAGC 261240
Query 121 GAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-A 179
|| ||||| || ||| ||| || || ||||||||| || || |||||| | |
Sbjct 261239 AAGCTTAAGCCGTT-AGGTG---TAGGCGCAGCGAAAGCGAGTCTGAATAGGGCGCCATA 261184
Query 180 GTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTA 239
||| | || ||||| ||||||| | |||||| || || |||||||||| ||||||
Sbjct 261183 GTTTGATGCATTAGACCCGAAACCCGGCGATCTATGCATGACCAGGTTGAAGGTGCGGTA 261124
Query 240 ACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAG 299
|| || ||||||||||||||| | || |||||||| || |||||||| | | | |||
Sbjct 261123 ACACGCACTGGAGGACCGAACCGTTCAATGTTGAAAAATTGTCGGATGAGTTGTGCTTAG 261064
Query 300 GGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334
|||||||||||||||||| | ||||||||||| ||
Sbjct 261063 GGGTGAAAGGCCAATCAAGCCGGGAAATAGCTGGT 261029
>seq11968
Length=3642
Score = 190 bits (210), Expect = 4e-46
Identities = 243/331 (73%), Gaps = 8/331 (2%)
Strand=Plus/Plus
Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63
||||| ||||| ||||||||| |||||| ||| ||| ||||| | | || |||
Sbjct 1800 CCCGACAAGGGGAGTGAAATAGTTCCTGAAACCGGACGCTTACAAACAGGCGAGGCCC-- 1857
Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123
| ||||||| ||| ||||||| || ||| ||| ||| |||| ||| || ||| ||
Sbjct 1858 -GCAAGGGTGACGCCGTACCTTTTGTATTATGGGCCAGCGACTTAG-CGTGACGAGCAAG 1915
Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183
||||| | |||| || || || ||||||||| || || ||||| ||||
Sbjct 1916 CTTAAGCCGAT-AGGCGA---AGGCGCAGCGAAAGCGAGTCTGAATAGGGCATTCAGTTC 1971
Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243
|| ||| ||||| |||||||| |||||||| ||| | ||||| ||||| | |||||| |
Sbjct 1972 GTCGCGTTAGACCCGAAACCTAGTGATCTAGCCATGTGCAGGCTGAAGATGGGGTAACAC 2031
Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303
|||||| |||||||||| |||||||| ||||||||| | || |||||||
Sbjct 2032 CCATTGGAGGGCCGAACCGGTGTCTGTTGAAAAAGACTCGGATGACGTGTGGTTAGGGGT 2091
Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGT 334
||||||||||||||||| ||| |||||| ||
Sbjct 2092 GAAAGGCCAATCAAACTAGGAGATAGCTGGT 2122
>seq8549
Length=2370
Score = 185 bits (204), Expect = 2e-44
Identities = 243/332 (73%), Gaps = 6/332 (2%)
Strand=Plus/Minus
Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63
||||| ||||| |||||| || |||||| | | |||||||||| || |||||
Sbjct 1111 CCCGATGAGGGGAGTGAAACAGTACCTGAAACGGATTGCCTACAAGCAGTAGGAGCTCTC 1052
Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123
| | ||||| |||| ||| |||||||||| | || || ||| | || | ||| ||
Sbjct 1051 TTGTGGAGTGACTGCGTACCTCTTGCATAATGGGTCTGTGACTTAAT-GTATCAAGCAAG 993
Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTT 182
||||| | ||| ||| || || ||||||||| || || |||||||| ||||
Sbjct 992 CTTAAGCCGAT-AGGTG---TAGGCGCAGCGAAAGCGAGTCTGAATAGGGCGACTTAGTT 937
Query 183 GGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACG 242
| | ||||| ||||||| | |||||| || || |||| ||||| ||||||||
Sbjct 936 TGATGTATTAGACCCGAAACCCGGCGATCTAGGCATGACCAGGATGAAGGTGCGGTAACA 877
Query 243 CGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGG 302
|| |||||| |||||||| | |||||||||||||| ||||||| | | | ||||||
Sbjct 876 CGCACTGGAGGTCCGAACCGATTAACGTTGAAAAGTTACCGGATGAGTTGTGTTTAGGGG 817
Query 303 TGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334
||||||||||||||| | ||||||||||| ||
Sbjct 816 TGAAAGGCCAATCAAGCCGGGAAATAGCTGGT 785
>seq7320
Length=4144
Score = 172 bits (190), Expect = 1e-40
Identities = 234/324 (72%), Gaps = 8/324 (2%)
Strand=Plus/Plus
Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70
||||| |||||||||| |||||| ||| || ||||| | || |||||| | | |
Sbjct 2246 AGGGGAGTGAAATAGATCCTGAAACCGTATGCATACAAACAGTGGGAGCCTCGCAAGG-G 2304
Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130
||||| |||| ||||||| |||||| | | ||| ||| ||| ||| || ||||
Sbjct 2305 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTAGCAAGCTTAACC 2363
Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190
| | || || || || ||||||||| | || |||||| | ||||| |||
Sbjct 2364 GATAGGGG------AGGCGTAGCGAAAGCGAGTCCGAATAGGGCGTCTAGTTGCTGGGTG 2417
Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250
||||| ||||||| |||||||| ||| | |||| ||||| || ||||| || |||
Sbjct 2418 TAGACCCGAAACCAAGTGATCTATCCATGGCCAGGATGAAGGTGCCGTAACAGGTACTGG 2477
Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310
||| ||||||| ||| |||||||| ||| |||||| | || ||||||||||||||
Sbjct 2478 AGGTCCGAACCCACAAATGTTGAAAAATTTGGGGATGAGCTGTGGATAGGGGTGAAAGGC 2537
Query 311 CAATCAAACTGGGAAATAGCTCGT 334
|| |||||| |||||||||| ||
Sbjct 2538 TAAACAAACTTGGAAATAGCTGGT 2561
>seq6993
Length=5165
Score = 158 bits (174), Expect = 2e-36
Identities = 231/324 (71%), Gaps = 7/324 (2%)
Strand=Plus/Plus
Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70
||||| |||||||||| |||||| ||| | || ||||| | || |||||| | | |
Sbjct 1179 AGGGGAGTGAAATAGATCCTGAAACCGTGTGCATACAAACAGTAGGAGCCTCGAAAGG-G 1237
Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130
||||| |||| ||||||| |||||| | | ||| ||| ||| || | ||||
Sbjct 1238 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTTGCAATCTTAACC 1296
Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190
| | || || || || |||| |||| | || |||||| ||| | |||
Sbjct 1297 GAATAGGGA-----AGGCGTAGAGAAATCGAGTCCGAATAGGGCGTTCAGTCGCTGGGTG 1351
Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250
||||| ||||||| ||||||| ||| | |||||||||| |||||||| ||| |||
Sbjct 1352 TAGACCCGAAACCAGATGATCTATCCATGGCCAGGTTGAAGGTGCGGTAACACGTACTGG 1411
Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310
||||||||||| |||||||||||||| |||||| | || ||||||||||||||
Sbjct 1412 AGGACCGAACCCACTAACGTTGAAAAGTTAGGGGATGAGCTGTGGATAGGGGTGAAAGGC 1471
Query 311 CAATCAAACTGGGAAATAGCTCGT 334
|| |||| |||||||||| ||
Sbjct 1472 TAAACAAATCTGGAAATAGCTGGT 1495
>seq9910
Length=308115
Score = 150 bits (166), Expect = 3e-34
Identities = 229/324 (71%), Gaps = 9/324 (3%)
Strand=Plus/Minus
Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70
||||| |||||||||| |||||| |||| || ||||| || |||||| | |
Sbjct 258651 AGGGGAGTGAAATAGATCCTGAAACCGCATGCTTACAAAAAGTAGGAGCCC---GCAAGG 258595
Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130
||||| |||| ||||||| |||||| | | ||| ||| ||| || |||||||
Sbjct 258594 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTGGCAAGGTTAACC 258536
Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190
| | || ||||| || |||| |||| | || |||||| | ||| | |||
Sbjct 258535 GAATAGGGG-----AGCCGTAGAGAAATCGAGTCCGAATAGGGCGTCCAGTCGCTGGGTG 258481
Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250
||||| ||||||| |||||||| ||| | |||| ||||| || ||||| || |||
Sbjct 258480 TAGACCCGAAACCAAGTGATCTATCCATGGCCAGGATGAAGGTGCCGTAACAGGTACTGG 258421
Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310
||| |||||||| | |||| ||| | ||||||| | || ||||||||||||||
Sbjct 258420 AGGTCCGAACCGACTAGTGTTGCAAAACTAGCGGATGAGCTGTGGATAGGGGTGAAAGGC 258361
Query 311 CAATCAAACTGGGAAATAGCTCGT 334
|| |||||| |||||||||| ||
Sbjct 258360 TAAACAAACTTGGAAATAGCTGGT 258337
>seq5225
Length=798
Score = 140 bits (154), Expect = 6e-31
Identities = 232/334 (69%), Gaps = 17/334 (5%)
Strand=Plus/Plus
Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70
||||| |||||||||| |||||| |||| || ||||| | ||||||||| | | |
Sbjct 295 AGGGGAGTGAAATAGATCCTGAAACCGCATGCATACAAACAGTCGGAGCCTGGAAACG-G 353
Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130
|||||||||| ||||||| |||||| | | ||| ||| ||| || || ||||
Sbjct 354 GTGACGGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTGGCAAGCTTAACC 412
Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAAC----------AGGGCGACGAG 180
| | || || || || |||| |||| | ||| |||||| | ||
Sbjct 413 GAATAGGGA-----AGGCGTAGAGAAAACGAGTCCGAACGAGTCCGAATAGGGCGTCCAG 467
Query 181 TTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAA 240
| | ||| ||||| ||||||| |||||||| ||| | |||| ||||| || ||||
Sbjct 468 TCGCTGGGTGTAGACCCGAAACCAAGTGATCTATCCATGGCCAGGATGAAGGTGCCGTAA 527
Query 241 CGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGG 300
| || |||||| |||||||| | |||| ||| | ||||||| | || ||||
Sbjct 528 CAGGTACTGGAGGTCCGAACCGACTAGTGTTGCAAAACTAGCGGATGAGCTGTGGATAGG 587
Query 301 GGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334
|||||||||| || |||||| |||||||||| ||
Sbjct 588 GGTGAAAGGCTAAACAAACTTGGAAATAGCTGGT 621
>seq10654
Length=1634
Score = 127 bits (140), Expect = 4e-27
Identities = 142/190 (75%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 145 AGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTAGACGCGAAACCT 204
|| ||||| |||| |||| | || |||||||| ||| | ||| ||||| |||||||
Sbjct 39 AGGCGAAGAGAAATCGAGTCCGAATAGGGCGACTAGTCGCTGGGTGTAGACCCGAAACCA 98
Query 205 TGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGT 264
|||||||| ||| | |||| ||||| || ||||| || |||||| ||||||||
Sbjct 99 AGTGATCTATCCATGGCCAGGATGAAGGTGCCGTAACAGGTACTGGAGGTCCGAACCGAC 158
Query 265 AAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGA 324
| |||| ||| | ||||||| | || |||||||||||||| || |||||| |||
Sbjct 159 TAGTGTTGCAAAACTAGCGGATGAGCTGTGGATAGGGGTGAAAGGCTAAACAAACTTGGA 218
Query 325 AATAGCTCGT 334
||||||| ||
Sbjct 219 AATAGCTGGT 228
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 972653506048
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