Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq8424 196 9e-48 seq11968 190 4e-46 seq8549 185 2e-44 seq7320 172 1e-40 seq6993 158 2e-36 seq9910 150 3e-34 seq5225 140 6e-31 seq10654 127 4e-27 >seq8424 Length=263062 Score = 196 bits (216), Expect = 9e-48 Identities = 248/335 (74%), Gaps = 12/335 (4%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||| || |||||| ||| |||||||||| || |||| | Sbjct 261355 CCCGATGAGGGGAGTGAAACAGTACCTGAAACCGGATGCCTACAAGCAGTGGGAGG---G 261299 Query 64 TGATTCGG---TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGC 120 | || | |||| |||| ||| |||||||||| | || || ||||| || | ||| Sbjct 261298 TCCTTGAGACCTGACCGCGTACCTCTTGCATAATGGGTCTGTGACTTAGT-GTATCAAGC 261240 Query 121 GAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-A 179 || ||||| || ||| ||| || || ||||||||| || || |||||| | | Sbjct 261239 AAGCTTAAGCCGTT-AGGTG---TAGGCGCAGCGAAAGCGAGTCTGAATAGGGCGCCATA 261184 Query 180 GTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTA 239 ||| | || ||||| ||||||| | |||||| || || |||||||||| |||||| Sbjct 261183 GTTTGATGCATTAGACCCGAAACCCGGCGATCTATGCATGACCAGGTTGAAGGTGCGGTA 261124 Query 240 ACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAG 299 || || ||||||||||||||| | || |||||||| || |||||||| | | | ||| Sbjct 261123 ACACGCACTGGAGGACCGAACCGTTCAATGTTGAAAAATTGTCGGATGAGTTGTGCTTAG 261064 Query 300 GGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 |||||||||||||||||| | ||||||||||| || Sbjct 261063 GGGTGAAAGGCCAATCAAGCCGGGAAATAGCTGGT 261029 >seq11968 Length=3642 Score = 190 bits (210), Expect = 4e-46 Identities = 243/331 (73%), Gaps = 8/331 (2%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| ||||||||| |||||| ||| ||| ||||| | | || ||| Sbjct 1800 CCCGACAAGGGGAGTGAAATAGTTCCTGAAACCGGACGCTTACAAACAGGCGAGGCCC-- 1857 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | ||||||| ||| ||||||| || ||| ||| ||| |||| ||| || ||| || Sbjct 1858 -GCAAGGGTGACGCCGTACCTTTTGTATTATGGGCCAGCGACTTAG-CGTGACGAGCAAG 1915 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 ||||| | |||| || || || ||||||||| || || ||||| |||| Sbjct 1916 CTTAAGCCGAT-AGGCGA---AGGCGCAGCGAAAGCGAGTCTGAATAGGGCATTCAGTTC 1971 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 || ||| ||||| |||||||| |||||||| ||| | ||||| ||||| | |||||| | Sbjct 1972 GTCGCGTTAGACCCGAAACCTAGTGATCTAGCCATGTGCAGGCTGAAGATGGGGTAACAC 2031 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 |||||| |||||||||| |||||||| ||||||||| | || ||||||| Sbjct 2032 CCATTGGAGGGCCGAACCGGTGTCTGTTGAAAAAGACTCGGATGACGTGTGGTTAGGGGT 2091 Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||| ||| |||||| || Sbjct 2092 GAAAGGCCAATCAAACTAGGAGATAGCTGGT 2122 >seq8549 Length=2370 Score = 185 bits (204), Expect = 2e-44 Identities = 243/332 (73%), Gaps = 6/332 (2%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||| || |||||| | | |||||||||| || ||||| Sbjct 1111 CCCGATGAGGGGAGTGAAACAGTACCTGAAACGGATTGCCTACAAGCAGTAGGAGCTCTC 1052 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | | ||||| |||| ||| |||||||||| | || || ||| | || | ||| || Sbjct 1051 TTGTGGAGTGACTGCGTACCTCTTGCATAATGGGTCTGTGACTTAAT-GTATCAAGCAAG 993 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTT 182 ||||| | ||| ||| || || ||||||||| || || |||||||| |||| Sbjct 992 CTTAAGCCGAT-AGGTG---TAGGCGCAGCGAAAGCGAGTCTGAATAGGGCGACTTAGTT 937 Query 183 GGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACG 242 | | ||||| ||||||| | |||||| || || |||| ||||| |||||||| Sbjct 936 TGATGTATTAGACCCGAAACCCGGCGATCTAGGCATGACCAGGATGAAGGTGCGGTAACA 877 Query 243 CGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGG 302 || |||||| |||||||| | |||||||||||||| ||||||| | | | |||||| Sbjct 876 CGCACTGGAGGTCCGAACCGATTAACGTTGAAAAGTTACCGGATGAGTTGTGTTTAGGGG 817 Query 303 TGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||| | ||||||||||| || Sbjct 816 TGAAAGGCCAATCAAGCCGGGAAATAGCTGGT 785 >seq7320 Length=4144 Score = 172 bits (190), Expect = 1e-40 Identities = 234/324 (72%), Gaps = 8/324 (2%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| ||| || ||||| | || |||||| | | | Sbjct 2246 AGGGGAGTGAAATAGATCCTGAAACCGTATGCATACAAACAGTGGGAGCCTCGCAAGG-G 2304 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| ||||||| |||||| | | ||| ||| ||| ||| || |||| Sbjct 2305 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTAGCAAGCTTAACC 2363 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | || || || || ||||||||| | || |||||| | ||||| ||| Sbjct 2364 GATAGGGG------AGGCGTAGCGAAAGCGAGTCCGAATAGGGCGTCTAGTTGCTGGGTG 2417 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| |||||||| ||| | |||| ||||| || ||||| || ||| Sbjct 2418 TAGACCCGAAACCAAGTGATCTATCCATGGCCAGGATGAAGGTGCCGTAACAGGTACTGG 2477 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| ||||||| ||| |||||||| ||| |||||| | || |||||||||||||| Sbjct 2478 AGGTCCGAACCCACAAATGTTGAAAAATTTGGGGATGAGCTGTGGATAGGGGTGAAAGGC 2537 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 || |||||| |||||||||| || Sbjct 2538 TAAACAAACTTGGAAATAGCTGGT 2561 >seq6993 Length=5165 Score = 158 bits (174), Expect = 2e-36 Identities = 231/324 (71%), Gaps = 7/324 (2%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| ||| | || ||||| | || |||||| | | | Sbjct 1179 AGGGGAGTGAAATAGATCCTGAAACCGTGTGCATACAAACAGTAGGAGCCTCGAAAGG-G 1237 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| ||||||| |||||| | | ||| ||| ||| || | |||| Sbjct 1238 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTTGCAATCTTAACC 1296 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | || || || || |||| |||| | || |||||| ||| | ||| Sbjct 1297 GAATAGGGA-----AGGCGTAGAGAAATCGAGTCCGAATAGGGCGTTCAGTCGCTGGGTG 1351 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| ||||||| ||| | |||||||||| |||||||| ||| ||| Sbjct 1352 TAGACCCGAAACCAGATGATCTATCCATGGCCAGGTTGAAGGTGCGGTAACACGTACTGG 1411 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||||||||||| |||||||||||||| |||||| | || |||||||||||||| Sbjct 1412 AGGACCGAACCCACTAACGTTGAAAAGTTAGGGGATGAGCTGTGGATAGGGGTGAAAGGC 1471 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 || |||| |||||||||| || Sbjct 1472 TAAACAAATCTGGAAATAGCTGGT 1495 >seq9910 Length=308115 Score = 150 bits (166), Expect = 3e-34 Identities = 229/324 (71%), Gaps = 9/324 (3%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| |||| || ||||| || |||||| | | Sbjct 258651 AGGGGAGTGAAATAGATCCTGAAACCGCATGCTTACAAAAAGTAGGAGCCC---GCAAGG 258595 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| ||||||| |||||| | | ||| ||| ||| || ||||||| Sbjct 258594 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTGGCAAGGTTAACC 258536 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | || ||||| || |||| |||| | || |||||| | ||| | ||| Sbjct 258535 GAATAGGGG-----AGCCGTAGAGAAATCGAGTCCGAATAGGGCGTCCAGTCGCTGGGTG 258481 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| |||||||| ||| | |||| ||||| || ||||| || ||| Sbjct 258480 TAGACCCGAAACCAAGTGATCTATCCATGGCCAGGATGAAGGTGCCGTAACAGGTACTGG 258421 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| |||||||| | |||| ||| | ||||||| | || |||||||||||||| Sbjct 258420 AGGTCCGAACCGACTAGTGTTGCAAAACTAGCGGATGAGCTGTGGATAGGGGTGAAAGGC 258361 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 || |||||| |||||||||| || Sbjct 258360 TAAACAAACTTGGAAATAGCTGGT 258337 >seq5225 Length=798 Score = 140 bits (154), Expect = 6e-31 Identities = 232/334 (69%), Gaps = 17/334 (5%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| |||| || ||||| | ||||||||| | | | Sbjct 295 AGGGGAGTGAAATAGATCCTGAAACCGCATGCATACAAACAGTCGGAGCCTGGAAACG-G 353 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||||||||| ||||||| |||||| | | ||| ||| ||| || || |||| Sbjct 354 GTGACGGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTGGCAAGCTTAACC 412 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAAC----------AGGGCGACGAG 180 | | || || || || |||| |||| | ||| |||||| | || Sbjct 413 GAATAGGGA-----AGGCGTAGAGAAAACGAGTCCGAACGAGTCCGAATAGGGCGTCCAG 467 Query 181 TTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAA 240 | | ||| ||||| ||||||| |||||||| ||| | |||| ||||| || |||| Sbjct 468 TCGCTGGGTGTAGACCCGAAACCAAGTGATCTATCCATGGCCAGGATGAAGGTGCCGTAA 527 Query 241 CGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGG 300 | || |||||| |||||||| | |||| ||| | ||||||| | || |||| Sbjct 528 CAGGTACTGGAGGTCCGAACCGACTAGTGTTGCAAAACTAGCGGATGAGCTGTGGATAGG 587 Query 301 GGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 |||||||||| || |||||| |||||||||| || Sbjct 588 GGTGAAAGGCTAAACAAACTTGGAAATAGCTGGT 621 >seq10654 Length=1634 Score = 127 bits (140), Expect = 4e-27 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 145 AGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTAGACGCGAAACCT 204 || ||||| |||| |||| | || |||||||| ||| | ||| ||||| ||||||| Sbjct 39 AGGCGAAGAGAAATCGAGTCCGAATAGGGCGACTAGTCGCTGGGTGTAGACCCGAAACCA 98 Query 205 TGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGT 264 |||||||| ||| | |||| ||||| || ||||| || |||||| |||||||| Sbjct 99 AGTGATCTATCCATGGCCAGGATGAAGGTGCCGTAACAGGTACTGGAGGTCCGAACCGAC 158 Query 265 AAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGA 324 | |||| ||| | ||||||| | || |||||||||||||| || |||||| ||| Sbjct 159 TAGTGTTGCAAAACTAGCGGATGAGCTGTGGATAGGGGTGAAAGGCTAAACAAACTTGGA 218 Query 325 AATAGCTCGT 334 ||||||| || Sbjct 219 AATAGCTGGT 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972653506048