Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01000150.1 Length=138 Score E Sequences producing significant alignments: (Bits) Value seq13862 132 3e-29 seq9910 132 3e-29 seq6993 102 6e-20 seq7320 93.3 3e-17 seq6860 71.6 1e-10 >seq13862 Length=422 Score = 132 bits (146), Expect = 3e-29 Identities = 102/121 (84%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 18 TACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC 77 ||||| ||||||||| ||||||||||||||||| ||| | | |||||||||||||||| Sbjct 305 TACGGCTACCTTGTTACGACTTCACCCCAGTCACGAACCCCGCCGTGGTAAGCGCCCTCC 246 Query 78 CGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGT 137 ||||| ||||||||||||| | |||| |||||||||||||||||||||||||| Sbjct 245 TTGCGGTTAGGCTACCTACTTCTGGCGAGACCCGCTCCCATGGTGTGACGGGCGGTGTGT 186 Query 138 A 138 | Sbjct 185 A 185 >seq9910 Length=308115 Score = 132 bits (146), Expect = 3e-29 Identities = 102/121 (84%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 18 TACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC 77 ||||| ||||||||| ||||||||||||||||| ||| | | |||||||||||||||| Sbjct 259826 TACGGCTACCTTGTTACGACTTCACCCCAGTCACGAACCCCGCCGTGGTAAGCGCCCTCC 259885 Query 78 CGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGT 137 ||||| ||||||||||||| | |||| |||||||||||||||||||||||||| Sbjct 259886 TTGCGGTTAGGCTACCTACTTCTGGCGAGACCCGCTCCCATGGTGTGACGGGCGGTGTGT 259945 Query 138 A 138 | Sbjct 259946 A 259946 >seq6993 Length=5165 Score = 102 bits (112), Expect = 6e-20 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 18 TACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC 77 ||||| ||||||||| ||||||||||||||||| ||||| | ||||| |||||||||| Sbjct 106 TACGGCTACCTTGTTACGACTTCACCCCAGTCACGAATCCTACCGTGGTGAGCGCCCTCC 47 Query 78 CGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGT 123 ||||| |||||| |||||| | |||| |||||||||||| Sbjct 46 TTGCGGTTAGGCTACCCACTTCTGGTAAGACCCTCTCCCATGGTGT 1 >seq7320 Length=4144 Score = 93.3 bits (102), Expect = 3e-17 Identities = 97/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74 |||||||| ||||||||| |||||||||||||||| || | || ||||| | || Sbjct 1041 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTAAACCCACTGTGGTCGCCTGCC 982 Query 75 TCCCGAAGGTTAAGCT-ACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGT 133 ||| | ||||| ||| | | |||| || | || ||||||||||||||||||||||| Sbjct 981 TCCTTACGGTTA-GCTCAACGCCTTCGAGTGAATCCAACTCCCATGGTGTGACGGGCGGT 923 Query 134 GTGTA 138 ||||| Sbjct 922 GTGTA 918 >seq6860 Length=6169 Score = 71.6 bits (78), Expect = 1e-10 Identities = 92/126 (73%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74 |||| ||| ||||||||| |||||||||||||||| | | | ||||| || || Sbjct 2421 CCCTCCGGCTACCTTGTTACGACTTCACCCCAGTCGCTGACCCTACCGTGGTCGGCTGCC 2362 Query 75 TCCC--GAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGG 132 ||| | ||||| ||| |||| | | || |||||||||||||||||||||| Sbjct 2361 TCCATTGCTGGTTAGCGCACCGCCTTCAGGTAAAGCCAACTCCCATGGTGTGACGGGCGG 2302 Query 133 TGTGTA 138 |||||| Sbjct 2301 TGTGTA 2296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345551208840