Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01000150.1
Length=138
Score E
Sequences producing significant alignments: (Bits) Value
seq13862 132 3e-29
seq9910 132 3e-29
seq6993 102 6e-20
seq7320 93.3 3e-17
seq6860 71.6 1e-10
>seq13862
Length=422
Score = 132 bits (146), Expect = 3e-29
Identities = 102/121 (84%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 18 TACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC 77
||||| ||||||||| ||||||||||||||||| ||| | | ||||||||||||||||
Sbjct 305 TACGGCTACCTTGTTACGACTTCACCCCAGTCACGAACCCCGCCGTGGTAAGCGCCCTCC 246
Query 78 CGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGT 137
||||| ||||||||||||| | |||| ||||||||||||||||||||||||||
Sbjct 245 TTGCGGTTAGGCTACCTACTTCTGGCGAGACCCGCTCCCATGGTGTGACGGGCGGTGTGT 186
Query 138 A 138
|
Sbjct 185 A 185
>seq9910
Length=308115
Score = 132 bits (146), Expect = 3e-29
Identities = 102/121 (84%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 18 TACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC 77
||||| ||||||||| ||||||||||||||||| ||| | | ||||||||||||||||
Sbjct 259826 TACGGCTACCTTGTTACGACTTCACCCCAGTCACGAACCCCGCCGTGGTAAGCGCCCTCC 259885
Query 78 CGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGT 137
||||| ||||||||||||| | |||| ||||||||||||||||||||||||||
Sbjct 259886 TTGCGGTTAGGCTACCTACTTCTGGCGAGACCCGCTCCCATGGTGTGACGGGCGGTGTGT 259945
Query 138 A 138
|
Sbjct 259946 A 259946
>seq6993
Length=5165
Score = 102 bits (112), Expect = 6e-20
Identities = 86/106 (81%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 18 TACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC 77
||||| ||||||||| ||||||||||||||||| ||||| | ||||| ||||||||||
Sbjct 106 TACGGCTACCTTGTTACGACTTCACCCCAGTCACGAATCCTACCGTGGTGAGCGCCCTCC 47
Query 78 CGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGT 123
||||| |||||| |||||| | |||| ||||||||||||
Sbjct 46 TTGCGGTTAGGCTACCCACTTCTGGTAAGACCCTCTCCCATGGTGT 1
>seq7320
Length=4144
Score = 93.3 bits (102), Expect = 3e-17
Identities = 97/125 (78%), Gaps = 2/125 (2%)
Strand=Plus/Minus
Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74
|||||||| ||||||||| |||||||||||||||| || | || ||||| | ||
Sbjct 1041 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTAAACCCACTGTGGTCGCCTGCC 982
Query 75 TCCCGAAGGTTAAGCT-ACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGT 133
||| | ||||| ||| | | |||| || | || |||||||||||||||||||||||
Sbjct 981 TCCTTACGGTTA-GCTCAACGCCTTCGAGTGAATCCAACTCCCATGGTGTGACGGGCGGT 923
Query 134 GTGTA 138
|||||
Sbjct 922 GTGTA 918
>seq6860
Length=6169
Score = 71.6 bits (78), Expect = 1e-10
Identities = 92/126 (73%), Gaps = 2/126 (2%)
Strand=Plus/Minus
Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74
|||| ||| ||||||||| |||||||||||||||| | | | ||||| || ||
Sbjct 2421 CCCTCCGGCTACCTTGTTACGACTTCACCCCAGTCGCTGACCCTACCGTGGTCGGCTGCC 2362
Query 75 TCCC--GAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGG 132
||| | ||||| ||| |||| | | || ||||||||||||||||||||||
Sbjct 2361 TCCATTGCTGGTTAGCGCACCGCCTTCAGGTAAAGCCAACTCCCATGGTGTGACGGGCGG 2302
Query 133 TGTGTA 138
||||||
Sbjct 2301 TGTGTA 2296
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 345551208840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |