Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq631 109 8e-22
seq1 95.1 2e-17
seq6910 89.7 8e-16
>seq631
Length=1316175
Score = 109 bits (120), Expect = 8e-22
Identities = 168/234 (72%), Gaps = 8/234 (3%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || |||| ||||| ||||| || |||||| |||||| |
Sbjct 1258877 GTACAAAGGGCAGGGACTTA----ACGCAAGCTT-ATGACCCGTACTTACTGGGAATT-C 1258930
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
||| || | | || || |||||| ||||||||||| | ||||| | ||
Sbjct 1258931 CTCATTCATGGGGAATAACTGCAATCCCTGATCCCCATCACTAATGGGGTTCAACGGGTT 1258990
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||| |||| | || ||| | || | ||| ||||||||| || ||||
Sbjct 1258991 ACCCACGCCTGCCAGCATAGGGTAGGCACATGCTGAGCCAGTCAGTGTAGTGCATGTGCA 1259050
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| | |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 1259051 GCCCCGTACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 1259103
>seq1
Length=7560343
Score = 95.1 bits (104), Expect = 2e-17
Identities = 147/202 (73%), Gaps = 11/202 (5%)
Strand=Plus/Minus
Query 37 TGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCC 96
|||| | | |||||| |||||| |||| || | | || ||||||||| ||||||
Sbjct 2927031 TGACCCACACTTACTGGGAATT-CCTCATTCATGGGGAATAATTGCAATCCCTGATCCCC 2926973
Query 97 ATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGT--GATAG--ACTCG 151
||||||| ||||| | ||||| | | ||| |||| || | ||| || ||
Sbjct 2926972 ATCACGAATGGGGTTCAACGGGTTACCTG--CGTGT--GCCAGTGTAGGGTAGGCACACG 2926917
Query 152 TTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGT 211
||| |||||||||||||||||| |||| | ||||||||||||||| ||||||||
Sbjct 2926916 GTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCTGGACATCTAAGGGCATCTTAGACCTGT 2926857
Query 212 TATTGCCTCAAACTTCCGTGGC 233
||||| ||||| ||| |||||
Sbjct 2926856 TATTG-CTCAATCTTGGGTGGC 2926836
>seq6910
Length=4409688
Score = 89.7 bits (98), Expect = 8e-16
Identities = 153/218 (70%), Gaps = 3/218 (1%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||| || || ||||| | ||||| ||| | | |||||| |||||| |
Sbjct 2895980 GTACAAAGGGCAGGAACTTAATCAACACAAGCTT-ATGGCCCTTACTTACTGGGAATT-C 2896037
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119
||| || | || ||||||||| |||||||| | || |||| || ||
Sbjct 2896038 CTCATTCCTGGAGAAAAATTGCAATCCCAGATCCCCATTATGAATGGGGTTCATCAGGTT 2896097
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||| | |||| ||| || | || | |||| |||||||||| || |||
Sbjct 2896098 ACCTGTGCCTGCAGGCGTGGGGTAGGCACACATTGAGCCAGTCAGTGTAGCATGCCTGCA 2896157
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217
|||| | ||| ||||||||| |||||||||||||||||
Sbjct 2896158 GCCCTGGACACCTAAGGGCACCACAGACCTGTTATTGC 2896195
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751890295185
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |