Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq631 109 8e-22 seq1 95.1 2e-17 seq6910 89.7 8e-16 >seq631 Length=1316175 Score = 109 bits (120), Expect = 8e-22 Identities = 168/234 (72%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| ||||| ||||| || |||||| |||||| | Sbjct 1258877 GTACAAAGGGCAGGGACTTA----ACGCAAGCTT-ATGACCCGTACTTACTGGGAATT-C 1258930 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 ||| || | | || || |||||| ||||||||||| | ||||| | || Sbjct 1258931 CTCATTCATGGGGAATAACTGCAATCCCTGATCCCCATCACTAATGGGGTTCAACGGGTT 1258990 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| |||| | || ||| | || | ||| ||||||||| || |||| Sbjct 1258991 ACCCACGCCTGCCAGCATAGGGTAGGCACATGCTGAGCCAGTCAGTGTAGTGCATGTGCA 1259050 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 1259051 GCCCCGTACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 1259103 >seq1 Length=7560343 Score = 95.1 bits (104), Expect = 2e-17 Identities = 147/202 (73%), Gaps = 11/202 (5%) Strand=Plus/Minus Query 37 TGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCC 96 |||| | | |||||| |||||| |||| || | | || ||||||||| |||||| Sbjct 2927031 TGACCCACACTTACTGGGAATT-CCTCATTCATGGGGAATAATTGCAATCCCTGATCCCC 2926973 Query 97 ATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGT--GATAG--ACTCG 151 ||||||| ||||| | ||||| | | ||| |||| || | ||| || || Sbjct 2926972 ATCACGAATGGGGTTCAACGGGTTACCTG--CGTGT--GCCAGTGTAGGGTAGGCACACG 2926917 Query 152 TTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGT 211 ||| |||||||||||||||||| |||| | ||||||||||||||| |||||||| Sbjct 2926916 GTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCTGGACATCTAAGGGCATCTTAGACCTGT 2926857 Query 212 TATTGCCTCAAACTTCCGTGGC 233 ||||| ||||| ||| ||||| Sbjct 2926856 TATTG-CTCAATCTTGGGTGGC 2926836 >seq6910 Length=4409688 Score = 89.7 bits (98), Expect = 8e-16 Identities = 153/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||| || || ||||| | ||||| ||| | | |||||| |||||| | Sbjct 2895980 GTACAAAGGGCAGGAACTTAATCAACACAAGCTT-ATGGCCCTTACTTACTGGGAATT-C 2896037 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 ||| || | || ||||||||| |||||||| | || |||| || || Sbjct 2896038 CTCATTCCTGGAGAAAAATTGCAATCCCAGATCCCCATTATGAATGGGGTTCATCAGGTT 2896097 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | |||| ||| || | || | |||| |||||||||| || ||| Sbjct 2896098 ACCTGTGCCTGCAGGCGTGGGGTAGGCACACATTGAGCCAGTCAGTGTAGCATGCCTGCA 2896157 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||| ||||||||| ||||||||||||||||| Sbjct 2896158 GCCCTGGACACCTAAGGGCACCACAGACCTGTTATTGC 2896195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751890295185