Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1 100 5e-19 >seq1 Length=7560343 Score = 100 bits (110), Expect = 5e-19 Identities = 131/179 (73%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 140 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGA 199 ||||||||| | || ||||||||||||||| | | || | | |||||||| ||||| Sbjct 2926238 GAATAGGACC-GTGGCCCTATTTTGTTGGTTTTTGGAACTGAGGCCATGATTAAGAGGGA 2926296 Query 200 TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTA 259 | | | |||| | ||||| | |||||||||||||||||| | ||||| Sbjct 2926297 TGGCCAGGGGCATTCGTATTGCACCACTAGAGGTGAAATTCTTGGACCAGTGCAAGACGG 2926356 Query 260 ACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || | ||||||| || ||||| |||||||||||||||| |||||||||| || || Sbjct 2926357 ACCAGAGCGAAAGGATTGGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGTCAGAGG 2926414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915062180032