Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq11436 140 1e-30
seq4298 125 3e-26
seq5105 122 4e-25
seq7850 107 8e-21
seq12713 104 1e-19
seq8375 100 1e-18
seq11720 87.8 7e-15
seq12984 86.0 3e-14
seq4448 86.0 3e-14
seq4411 86.0 3e-14
seq9543 84.2 9e-14
seq9959 82.4 3e-13
seq12239 80.6 1e-12
seq10084 78.8 4e-12
seq6591 78.8 4e-12
seq711 77.0 1e-11
seq5566 75.2 5e-11
>seq11436
Length=2557778
Score = 140 bits (154), Expect = 1e-30
Identities = 100/115 (87%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 2057589 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 2057648
Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|| || |||||| ||| ||||||||||| ||||| | |||||||||||| ||
Sbjct 2057649 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGTGA 2057703
>seq4298
Length=981681
Score = 125 bits (138), Expect = 3e-26
Identities = 93/109 (85%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 575 GAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCG 634
|||||||||||||||||||||| ||| ||||| ||||||||||||||||||||| ||
Sbjct 23679 GAAAGATGGTGAACTATGCCTGGGCAGGATGAAGGCAGAGGAAACTCTGGTGGAGGTCCG 23738
Query 635 CAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||||| ||| ||||||||||| | ||| | ||||||||||||||
Sbjct 23739 CAGCGGTCCTGACGTGCAAATCGGTTGTCTGACCAGGGTATAGGGGCGA 23787
>seq5105
Length=56140
Score = 122 bits (134), Expect = 4e-25
Identities = 99/120 (83%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| ||||| |||||||||||||||||||||| ||| ||||| ||||||||||||||
Sbjct 26247 TGTTAGGACCTGAAAGATGGTGAACTATGCCTGGGCAGGATGAAGGCAGAGGAAACTCTG 26188
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||||| | ||| | ||| ||||||||||| | ||| | |||||||||||||||
Sbjct 26187 GTGGAGGACCATAGCAATCCTGACGTGCAAATCGGTTGTCTGACCTGGGTATAGGGGCGA 26128
>seq7850
Length=4522524
Score = 107 bits (118), Expect = 8e-21
Identities = 105/135 (78%), Gaps = 8/135 (6%)
Strand=Plus/Minus
Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614
||||||| ||| ||||| |||||||||||||||||| ||| |||| ||||||| ||
Sbjct 495964 GAGCATAC--GTTAGGACCGGAAAGATGGTGAACTATGTCTGGGCAGGGCGAAGCCACAG 495907
Query 615 GAAACTCTGGTGGAGGCTC------GCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||| | | |||||| ||| ||||||||| ||||| |
Sbjct 495906 GAAACTCTGGTGGAGGTCCGTAGCAGTAGCGGTCCTGATCTGCAAATCGGTCGTCTGACC 495847
Query 669 TGGGTATAGGGGCGA 683
| |||||||||||||
Sbjct 495846 TAGGTATAGGGGCGA 495832
>seq12713
Length=1138196
Score = 104 bits (114), Expect = 1e-19
Identities = 119/160 (74%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||||||||||||| | || ||| |||||| | | ||||| |||||||
Sbjct 1033416 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 1033357
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| || ||||||||||| ||||||| || | ||||| |||||| ||||| |
Sbjct 1033356 ACCAGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAAAACTTTAAAG 1033297
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||||||| || || ||| ||| ||| | ||| || ||
Sbjct 1033296 AGAGAGTTCAAGAGGGCGTAAAACCGTTAAGAGGTAAACG 1033257
>seq8375
Length=1422869
Score = 100 bits (110), Expect = 1e-18
Identities = 90/113 (80%), Gaps = 4/113 (4%)
Strand=Plus/Plus
Query 575 GAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCG 634
|||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
Sbjct 1047023 GAAAGATGGTGAACTATGCCTGGGCAGGGCAAAGCCAGAGGAAACTCTGGTGGAGGTCTG 1047082
Query 635 CAGCGGTTCTGGCGTGCAAATCGATCGTC----AAATTTGGGTATAGGGGCGA 683
||| || ||| | ||||||||| || || | |||||||||||||||
Sbjct 1047083 TAGCTGTCCTGACATGCAAATCGGTCATCCGGTCGACCTGGGTATAGGGGCGA 1047135
>seq11720
Length=2365318
Score = 87.8 bits (96), Expect = 7e-15
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637
|||| |||||||||||||| |||| |||||||||||||||||||||| ||| | |
Sbjct 506418 AGATTGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGAAGGTCCATTG 506359
Query 638 CGGTTCTGGCGTGCAAATCGATCGTC 663
|||| ||| |||||| |||| |||||
Sbjct 506358 CGGTCCTGACGTGCAGATCGGTCGTC 506333
>seq12984
Length=7207180
Score = 86.0 bits (94), Expect = 3e-14
Identities = 113/157 (72%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|| ||| ||| ||||||||||||| | || ||| | |||| | | ||||| |||||||
Sbjct 6276868 GACTCGTTTTGCTTGGGAATGCAGCCCAAAGCGGGTGATAAACTCCATCTAAGGCTAAAT 6276927
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| ||| ||||||||||| |||| || || | |||| ||||||| ||||| |
Sbjct 6276928 ACCGGCATGAGACCGATAGTCAACAAATACCGTAAGGAAAAGTTGAAAAGAACTTTAAAG 6276987
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196
|||||||| || || ||| | | ||| | ||| ||
Sbjct 6276988 AGAGAGTTCAAGAGGGCGTAACACCGTTAAGAGGTAA 6277024
>seq4448
Length=753
Score = 86.0 bits (94), Expect = 3e-14
Identities = 115/160 (72%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||| | |||| ||||||||||||| | || ||| |||||| | |||| |||||||
Sbjct 160 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCTATCTAGGGCTAAAT 101
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| || |||| ||||| ||||||| || | ||||| ||||||| |||||| |
Sbjct 100 ACAAGCACAAGACTGATAGTCAACAAGTACTGTAAGGGAAAGTTGAAAAGAACTTTGAAG 41
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
| ||||| || || ||||||| ||| | ||| || ||
Sbjct 40 AATGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 1
>seq4411
Length=2306675
Score = 86.0 bits (94), Expect = 3e-14
Identities = 93/121 (77%), Gaps = 2/121 (2%)
Strand=Plus/Minus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| || ||| ||||||||||||||||||||| | |||| ||||||||||||| |||
Sbjct 1615661 TGTTAGGGCCCAAAAGATGGTGAACTATGCCTGGACAGGGCGAAGCCAGAGGAAGCTCCA 1615602
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATA-GGGGCG 682
| | || | |||||| ||| | ||||||| | | ||| | ||||||| ||||||
Sbjct 1615601 GCTG-GGTCCATAGCGGTCCTGACATGCAAATTGGTAGTCCGACCGGGGTATATGGGGCG 1615543
Query 683 A 683
|
Sbjct 1615542 A 1615542
>seq9543
Length=3342972
Score = 84.2 bits (92), Expect = 9e-14
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625
|| ||||| ||||||| ||||||| |||||| ||| |||||||||||||||||| |
Sbjct 2650318 TTAGGACCTGAAAGATAGTGAACTCTGCCTGGGCAGGAAGAAGCCAGAGGAAACTCTACT 2650377
Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
||||| || || | ||| |||| |||||| || || | ||| || ||||||
Sbjct 2650378 GGAGGTCCGTAGTCATCCTGACGTGTAAATCGGTCATCTGACCTGGCTACAGGGGC 2650433
>seq9959
Length=4392484
Score = 82.4 bits (90), Expect = 3e-13
Identities = 57/65 (88%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625
||||||||||||| |||||||||||| | || | || |||||||||||||||||||||
Sbjct 4240954 TTGGGACCCGAAATATGGTGAACTATCCTTGGGCAAGGAGAAGCCAGAGGAAACTCTGGT 4240895
Query 626 GGAGG 630
|||||
Sbjct 4240894 GGAGG 4240890
>seq12239
Length=2566301
Score = 80.6 bits (88), Expect = 1e-12
Identities = 80/104 (77%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637
|||||||||||| |||| | ||||||||||||||||||||| || |||||| | ||
Sbjct 609305 AGATGGTGAACTGTGCCCAGACAGGGTGAAGCCAGAGGAAACTATGTTGGAGGTCCAAAG 609246
Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
||| || | |||| || | |||| | |||||||||||||
Sbjct 609245 TGGTCTTGACATGCATATTGGCTGTCAGACCTGGGTATAGGGGC 609202
Score = 80.6 bits (88), Expect = 1e-12
Identities = 80/104 (77%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637
|||||||||||| |||| | ||||||||||||||||||||| || |||||| | ||
Sbjct 610178 AGATGGTGAACTGTGCCCAGACAGGGTGAAGCCAGAGGAAACTATGTTGGAGGTCCAAAG 610237
Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
||| || | |||| || | |||| | |||||||||||||
Sbjct 610238 TGGTCTTGACATGCATATTGGCTGTCAGACCTGGGTATAGGGGC 610281
>seq10084
Length=2964307
Score = 78.8 bits (86), Expect = 4e-12
Identities = 85/113 (75%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||||||||||||| | || |||| ||| || | | ||||| |||||||
Sbjct 1427222 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGTGAACTCCATCTAAGGCTAAAT 1427281
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152
| || ||| ||||| | ||||||| || | ||||| ||||||| ||
Sbjct 1427282 AACAGCATGAGGCCGATTGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAAC 1427334
>seq6591
Length=5217753
Score = 78.8 bits (86), Expect = 4e-12
Identities = 82/108 (76%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||||||||||||| | || ||| |||||| | | ||||| |||| ||
Sbjct 1895815 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTATAT 1895756
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 147
| ||| |||||| |||| ||||||| || | ||||| |||||
Sbjct 1895755 ACCGGCACGAGACCAATAGTCAACAAGTACCGTAAGGGAAAGTTGAAA 1895708
>seq711
Length=9888423
Score = 77.0 bits (84), Expect = 1e-11
Identities = 111/157 (71%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||||||||||||| | || ||| | |||| | | ||||| |||||||
Sbjct 603914 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGATAAACTCCATCTAAGGCTAAAT 603973
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| || |||||||||| |||| || | | ||| | ||||| ||||| |
Sbjct 603974 ACCCGCACAAGACCGATAGTCAACAAATACTGGCAGAAGAAGTTAAAAAGAACTTTAAAG 604033
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196
|||||||| || || ||| ||| ||| | ||| ||
Sbjct 604034 AGAGAGTTCAAGAGGGCGTAAAACGGTTAAGAGGTAA 604070
>seq5566
Length=208499
Score = 75.2 bits (82), Expect = 5e-11
Identities = 62/76 (82%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629
||| | |||| ||||||| |||||||| ||| |||||||||||||||||||| |||||
Sbjct 129473 GACTCAAAAGTTGGTGAATTATGCCTGGGCAGGATGAAGCCAGAGGAAACTCTGATGGAG 129532
Query 630 GCTCGCAGCGGTTCTG 645
| || ||| || |||
Sbjct 129533 GTTCATAGCAGTCCTG 129548
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079676984450
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |