Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq11436 140 1e-30 seq4298 125 3e-26 seq5105 122 4e-25 seq7850 107 8e-21 seq12713 104 1e-19 seq8375 100 1e-18 seq11720 87.8 7e-15 seq12984 86.0 3e-14 seq4448 86.0 3e-14 seq4411 86.0 3e-14 seq9543 84.2 9e-14 seq9959 82.4 3e-13 seq12239 80.6 1e-12 seq10084 78.8 4e-12 seq6591 78.8 4e-12 seq711 77.0 1e-11 seq5566 75.2 5e-11 >seq11436 Length=2557778 Score = 140 bits (154), Expect = 1e-30 Identities = 100/115 (87%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 2057589 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 2057648 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| ||||| | |||||||||||| || Sbjct 2057649 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGTGA 2057703 >seq4298 Length=981681 Score = 125 bits (138), Expect = 3e-26 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 575 GAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCG 634 |||||||||||||||||||||| ||| ||||| ||||||||||||||||||||| || Sbjct 23679 GAAAGATGGTGAACTATGCCTGGGCAGGATGAAGGCAGAGGAAACTCTGGTGGAGGTCCG 23738 Query 635 CAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| ||| ||||||||||| | ||| | |||||||||||||| Sbjct 23739 CAGCGGTCCTGACGTGCAAATCGGTTGTCTGACCAGGGTATAGGGGCGA 23787 >seq5105 Length=56140 Score = 122 bits (134), Expect = 4e-25 Identities = 99/120 (83%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||| |||||||||||||||||||||| ||| ||||| |||||||||||||| Sbjct 26247 TGTTAGGACCTGAAAGATGGTGAACTATGCCTGGGCAGGATGAAGGCAGAGGAAACTCTG 26188 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| | ||| | ||| ||||||||||| | ||| | ||||||||||||||| Sbjct 26187 GTGGAGGACCATAGCAATCCTGACGTGCAAATCGGTTGTCTGACCTGGGTATAGGGGCGA 26128 >seq7850 Length=4522524 Score = 107 bits (118), Expect = 8e-21 Identities = 105/135 (78%), Gaps = 8/135 (6%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||||| ||| ||||| |||||||||||||||||| ||| |||| ||||||| || Sbjct 495964 GAGCATAC--GTTAGGACCGGAAAGATGGTGAACTATGTCTGGGCAGGGCGAAGCCACAG 495907 Query 615 GAAACTCTGGTGGAGGCTC------GCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||| | | |||||| ||| ||||||||| ||||| | Sbjct 495906 GAAACTCTGGTGGAGGTCCGTAGCAGTAGCGGTCCTGATCTGCAAATCGGTCGTCTGACC 495847 Query 669 TGGGTATAGGGGCGA 683 | ||||||||||||| Sbjct 495846 TAGGTATAGGGGCGA 495832 >seq12713 Length=1138196 Score = 104 bits (114), Expect = 1e-19 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 1033416 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 1033357 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || ||||||||||| ||||||| || | ||||| |||||| ||||| | Sbjct 1033356 ACCAGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAAAACTTTAAAG 1033297 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||| ||| ||| | ||| || || Sbjct 1033296 AGAGAGTTCAAGAGGGCGTAAAACCGTTAAGAGGTAAACG 1033257 >seq8375 Length=1422869 Score = 100 bits (110), Expect = 1e-18 Identities = 90/113 (80%), Gaps = 4/113 (4%) Strand=Plus/Plus Query 575 GAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCG 634 |||||||||||||||||||||| |||| ||||||||||||||||||||||||| | Sbjct 1047023 GAAAGATGGTGAACTATGCCTGGGCAGGGCAAAGCCAGAGGAAACTCTGGTGGAGGTCTG 1047082 Query 635 CAGCGGTTCTGGCGTGCAAATCGATCGTC----AAATTTGGGTATAGGGGCGA 683 ||| || ||| | ||||||||| || || | ||||||||||||||| Sbjct 1047083 TAGCTGTCCTGACATGCAAATCGGTCATCCGGTCGACCTGGGTATAGGGGCGA 1047135 >seq11720 Length=2365318 Score = 87.8 bits (96), Expect = 7e-15 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637 |||| |||||||||||||| |||| |||||||||||||||||||||| ||| | | Sbjct 506418 AGATTGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGAAGGTCCATTG 506359 Query 638 CGGTTCTGGCGTGCAAATCGATCGTC 663 |||| ||| |||||| |||| ||||| Sbjct 506358 CGGTCCTGACGTGCAGATCGGTCGTC 506333 >seq12984 Length=7207180 Score = 86.0 bits (94), Expect = 3e-14 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 || ||| ||| ||||||||||||| | || ||| | |||| | | ||||| ||||||| Sbjct 6276868 GACTCGTTTTGCTTGGGAATGCAGCCCAAAGCGGGTGATAAACTCCATCTAAGGCTAAAT 6276927 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| |||| || || | |||| ||||||| ||||| | Sbjct 6276928 ACCGGCATGAGACCGATAGTCAACAAATACCGTAAGGAAAAGTTGAAAAGAACTTTAAAG 6276987 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||||| || || ||| | | ||| | ||| || Sbjct 6276988 AGAGAGTTCAAGAGGGCGTAACACCGTTAAGAGGTAA 6277024 >seq4448 Length=753 Score = 86.0 bits (94), Expect = 3e-14 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||||||||||||| | || ||| |||||| | |||| ||||||| Sbjct 160 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCTATCTAGGGCTAAAT 101 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || |||| ||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 100 ACAAGCACAAGACTGATAGTCAACAAGTACTGTAAGGGAAAGTTGAAAAGAACTTTGAAG 41 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 | ||||| || || ||||||| ||| | ||| || || Sbjct 40 AATGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 1 >seq4411 Length=2306675 Score = 86.0 bits (94), Expect = 3e-14 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| || ||| ||||||||||||||||||||| | |||| ||||||||||||| ||| Sbjct 1615661 TGTTAGGGCCCAAAAGATGGTGAACTATGCCTGGACAGGGCGAAGCCAGAGGAAGCTCCA 1615602 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATA-GGGGCG 682 | | || | |||||| ||| | ||||||| | | ||| | ||||||| |||||| Sbjct 1615601 GCTG-GGTCCATAGCGGTCCTGACATGCAAATTGGTAGTCCGACCGGGGTATATGGGGCG 1615543 Query 683 A 683 | Sbjct 1615542 A 1615542 >seq9543 Length=3342972 Score = 84.2 bits (92), Expect = 9e-14 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || ||||| ||||||| ||||||| |||||| ||| |||||||||||||||||| | Sbjct 2650318 TTAGGACCTGAAAGATAGTGAACTCTGCCTGGGCAGGAAGAAGCCAGAGGAAACTCTACT 2650377 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||||| || || | ||| |||| |||||| || || | ||| || |||||| Sbjct 2650378 GGAGGTCCGTAGTCATCCTGACGTGTAAATCGGTCATCTGACCTGGCTACAGGGGC 2650433 >seq9959 Length=4392484 Score = 82.4 bits (90), Expect = 3e-13 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 ||||||||||||| |||||||||||| | || | || ||||||||||||||||||||| Sbjct 4240954 TTGGGACCCGAAATATGGTGAACTATCCTTGGGCAAGGAGAAGCCAGAGGAAACTCTGGT 4240895 Query 626 GGAGG 630 ||||| Sbjct 4240894 GGAGG 4240890 >seq12239 Length=2566301 Score = 80.6 bits (88), Expect = 1e-12 Identities = 80/104 (77%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637 |||||||||||| |||| | ||||||||||||||||||||| || |||||| | || Sbjct 609305 AGATGGTGAACTGTGCCCAGACAGGGTGAAGCCAGAGGAAACTATGTTGGAGGTCCAAAG 609246 Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||| || | |||| || | |||| | ||||||||||||| Sbjct 609245 TGGTCTTGACATGCATATTGGCTGTCAGACCTGGGTATAGGGGC 609202 Score = 80.6 bits (88), Expect = 1e-12 Identities = 80/104 (77%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637 |||||||||||| |||| | ||||||||||||||||||||| || |||||| | || Sbjct 610178 AGATGGTGAACTGTGCCCAGACAGGGTGAAGCCAGAGGAAACTATGTTGGAGGTCCAAAG 610237 Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||| || | |||| || | |||| | ||||||||||||| Sbjct 610238 TGGTCTTGACATGCATATTGGCTGTCAGACCTGGGTATAGGGGC 610281 >seq10084 Length=2964307 Score = 78.8 bits (86), Expect = 4e-12 Identities = 85/113 (75%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || |||| ||| || | | ||||| ||||||| Sbjct 1427222 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGTGAACTCCATCTAAGGCTAAAT 1427281 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 | || ||| ||||| | ||||||| || | ||||| ||||||| || Sbjct 1427282 AACAGCATGAGGCCGATTGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAAC 1427334 >seq6591 Length=5217753 Score = 78.8 bits (86), Expect = 4e-12 Identities = 82/108 (76%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| |||| || Sbjct 1895815 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTATAT 1895756 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 147 | ||| |||||| |||| ||||||| || | ||||| ||||| Sbjct 1895755 ACCGGCACGAGACCAATAGTCAACAAGTACCGTAAGGGAAAGTTGAAA 1895708 >seq711 Length=9888423 Score = 77.0 bits (84), Expect = 1e-11 Identities = 111/157 (71%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| | |||| | | ||||| ||||||| Sbjct 603914 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGATAAACTCCATCTAAGGCTAAAT 603973 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || |||||||||| |||| || | | ||| | ||||| ||||| | Sbjct 603974 ACCCGCACAAGACCGATAGTCAACAAATACTGGCAGAAGAAGTTAAAAAGAACTTTAAAG 604033 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||||| || || ||| ||| ||| | ||| || Sbjct 604034 AGAGAGTTCAAGAGGGCGTAAAACGGTTAAGAGGTAA 604070 >seq5566 Length=208499 Score = 75.2 bits (82), Expect = 5e-11 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 ||| | |||| ||||||| |||||||| ||| |||||||||||||||||||| ||||| Sbjct 129473 GACTCAAAAGTTGGTGAATTATGCCTGGGCAGGATGAAGCCAGAGGAAACTCTGATGGAG 129532 Query 630 GCTCGCAGCGGTTCTG 645 | || ||| || ||| Sbjct 129533 GTTCATAGCAGTCCTG 129548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079676984450