Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01000345.1 Length=193 Score E Sequences producing significant alignments: (Bits) Value seq7320 123 3e-26 >seq7320 Length=4144 Score = 123 bits (136), Expect = 3e-26 Identities = 139/180 (77%), Gaps = 7/180 (4%) Strand=Plus/Minus Query 5 CTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAGATA 64 ||||||||||| ||||||||||||||||||| ||||| |||| ||||||| ||| Sbjct 3334 CTGAAGCTTAGTGGCTTTTCTTGGAAGCATGGTATCAATCACT---TCATCTACAAGTAG 3278 Query 65 ACTCGTCATCAGCTCCCGGCCTTAGAATC-CCGGATTTACCT-AAGATTCCAGCCTACCA 122 |||||| |||| | || | | | || || |||||||| ||| |||| | | | |||| Sbjct 3277 ACTCGTTATCA-CGCCTTGACATTGACTCTCCGGATTTGCCTAAAGAAT-CTGTCTACAC 3220 Query 123 CCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCATT 182 ||| ||| ||||| ||||| || |||| |||| ||||||||||||| ||||||||| Sbjct 3219 GCTTGAACCGGGACATCCAACACCCGGCTGACCTAACCTTCTCCGTCCCCACATCGCATT 3160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518324373702