Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq9910 104 2e-20 seq7320 98.7 9e-19 seq6993 91.5 1e-16 seq8424 89.7 5e-16 seq11968 78.8 9e-13 seq7282 75.2 1e-11 seq6860 73.4 4e-11 >seq9910 Length=308115 Score = 104 bits (114), Expect = 2e-20 Identities = 137/183 (75%), Gaps = 14/183 (8%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| | |||||| ||| ||||||||| |||||| ||||| |||| Sbjct 259115 GGTGGATGCCTTGGCGATGATAGGCGACGAAAGACGTGATAGCCTGCGATAAGCTTCGGG 259056 Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGG----CAACCCGATA---T 119 || ||||| ||| | |||||||| |||| || |||||||| | ||||| | | Sbjct 259055 GAGCTGGCAAATAAGCTTTGATCCGGAGATTTCTGAATGGGGAAACCCACCCGCAAGGGT 258996 Query 120 ATTGGAGA-TATAT-CATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAA 177 || | | | | || |||| | || ||| |||||||| ||| |||||||||||||||| Sbjct 258995 ATCGCATACTGAATACATA--GGTATGCG--AGGCGAACCTGGAGAACTGAAACATCTAA 258940 Query 178 GTA 180 ||| Sbjct 258939 GTA 258937 >seq7320 Length=4144 Score = 98.7 bits (108), Expect = 9e-19 Identities = 91/114 (80%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| | ||||||||||| ||| | |||||| ||||||||||||| ||||| |||| Sbjct 1775 GCATATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTGATAGCCTGCGTAAAGG 1834 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 | |||||| ||||| ||| | |||||||| | |||||||||||||| ||||| Sbjct 1835 TTCGGGGAGCTGGCAAATAAGCTTTGATCCGGACATATCCGAATGGGGAAACCC 1888 >seq6993 Length=5165 Score = 91.5 bits (100), Expect = 1e-16 Identities = 135/186 (73%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| | ||||||||||| ||| | |||||| ||||||||| || ||||| |||| Sbjct 709 GCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGC 768 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATA 120 | |||||| ||||| | | |||||||| |||| ||||||||||| |||||| Sbjct 769 TGCGGGGAGCTGGCAAACGAGCTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCGT 828 Query 121 TTGGAGAT--ATATCATAACGC-TAGGCGT---TAGGCGAACGTGGGGAACTGAAACATC 174 || || |||| || | |||| || | |||||||||| ||||||||||||| Sbjct 829 AAGGTCATCGTTATCTGAATACATAGG-GTAACGAAGCGAACGTGGCGAACTGAAACATC 887 Query 175 TAAGTA 180 |||||| Sbjct 888 TAAGTA 893 >seq8424 Length=263062 Score = 89.7 bits (98), Expect = 5e-16 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| | |||||| ||||||||||||| ||||||| |||| |||| Sbjct 262128 GGTGGATGCCTTGGCATGCACAGGCGATGAAGGACGTGATACGCTGCGATAAGCGTCGGG 262069 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || || |||| |||||||| ||| ||||||||||| ||||| Sbjct 262068 GAGGTGCGAATACCCTTTGATCCGACGATTTCCGAATGGGGAAACCC 262022 >seq11968 Length=3642 Score = 78.8 bits (86), Expect = 9e-13 Identities = 82/108 (76%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 7 CGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGG 66 |||||||||||| ||| || ||||||| ||| |||||| || ||||||| |||| || Sbjct 1295 CGGTGGATGCCTTGGCACTGAGAGGCGATGAAAGACGTGGTACGCTGCGATAAGCCTTGG 1354 Query 67 GGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 ||| || | | | |||||||| ||| || |||||||| ||||| Sbjct 1355 GGAGCTGCGAACAAGCTTTGATCCGAGGATTTCTGAATGGGGAAACCC 1402 >seq7282 Length=3089 Score = 75.2 bits (82), Expect = 1e-11 Identities = 73/93 (78%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| | |||||| ||| ||||||||| |||||| ||||| |||| Sbjct 2918 GGTGGATGCCTTGGCGATGATAGGCGACGAAAGACGTGATAGCCTGCGATAAGCTTCGGG 2977 Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATC 99 || ||||| ||| | |||||||| |||| || Sbjct 2978 GAGCTGGCAAATAAGCTTTGATCCGGAGATTTC 3010 >seq6860 Length=6169 Score = 73.4 bits (80), Expect = 4e-11 Identities = 81/108 (75%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 7 CGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGG 66 |||||||||||| ||| || ||||||| |||||||||| || ||||||| |||| | Sbjct 3297 CGGTGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTGCTACGCTGCGATAAGCCGTGA 3356 Query 67 GGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 ||| || | | ||||||| ||| ||||||||||| ||||| Sbjct 3357 GGAGCTGCGAAGGAGCTTTGATCCACGGATTTCCGAATGGGGAAACCC 3404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476730442479