Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01000370.1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
seq9910 104 2e-20
seq7320 98.7 9e-19
seq6993 91.5 1e-16
seq8424 89.7 5e-16
seq11968 78.8 9e-13
seq7282 75.2 1e-11
seq6860 73.4 4e-11
>seq9910
Length=308115
Score = 104 bits (114), Expect = 2e-20
Identities = 137/183 (75%), Gaps = 14/183 (8%)
Strand=Plus/Minus
Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67
||||||||||| ||| | |||||| ||| ||||||||| |||||| ||||| ||||
Sbjct 259115 GGTGGATGCCTTGGCGATGATAGGCGACGAAAGACGTGATAGCCTGCGATAAGCTTCGGG 259056
Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGG----CAACCCGATA---T 119
|| ||||| ||| | |||||||| |||| || |||||||| | ||||| | |
Sbjct 259055 GAGCTGGCAAATAAGCTTTGATCCGGAGATTTCTGAATGGGGAAACCCACCCGCAAGGGT 258996
Query 120 ATTGGAGA-TATAT-CATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAA 177
|| | | | | || |||| | || ||| |||||||| ||| ||||||||||||||||
Sbjct 258995 ATCGCATACTGAATACATA--GGTATGCG--AGGCGAACCTGGAGAACTGAAACATCTAA 258940
Query 178 GTA 180
|||
Sbjct 258939 GTA 258937
>seq7320
Length=4144
Score = 98.7 bits (108), Expect = 9e-19
Identities = 91/114 (80%), Gaps = 1/114 (1%)
Strand=Plus/Plus
Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61
||| | ||||||||||| ||| | |||||| ||||||||||||| ||||| ||||
Sbjct 1775 GCATATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTGATAGCCTGCGTAAAGG 1834
Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114
| |||||| ||||| ||| | |||||||| | |||||||||||||| |||||
Sbjct 1835 TTCGGGGAGCTGGCAAATAAGCTTTGATCCGGACATATCCGAATGGGGAAACCC 1888
>seq6993
Length=5165
Score = 91.5 bits (100), Expect = 1e-16
Identities = 135/186 (73%), Gaps = 8/186 (4%)
Strand=Plus/Plus
Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61
||| | ||||||||||| ||| | |||||| ||||||||| || ||||| ||||
Sbjct 709 GCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGC 768
Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATA 120
| |||||| ||||| | | |||||||| |||| ||||||||||| ||||||
Sbjct 769 TGCGGGGAGCTGGCAAACGAGCTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCGT 828
Query 121 TTGGAGAT--ATATCATAACGC-TAGGCGT---TAGGCGAACGTGGGGAACTGAAACATC 174
|| || |||| || | |||| || | |||||||||| |||||||||||||
Sbjct 829 AAGGTCATCGTTATCTGAATACATAGG-GTAACGAAGCGAACGTGGCGAACTGAAACATC 887
Query 175 TAAGTA 180
||||||
Sbjct 888 TAAGTA 893
>seq8424
Length=263062
Score = 89.7 bits (98), Expect = 5e-16
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67
||||||||||| ||| | |||||| ||||||||||||| ||||||| |||| ||||
Sbjct 262128 GGTGGATGCCTTGGCATGCACAGGCGATGAAGGACGTGATACGCTGCGATAAGCGTCGGG 262069
Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114
|| || |||| |||||||| ||| ||||||||||| |||||
Sbjct 262068 GAGGTGCGAATACCCTTTGATCCGACGATTTCCGAATGGGGAAACCC 262022
>seq11968
Length=3642
Score = 78.8 bits (86), Expect = 9e-13
Identities = 82/108 (76%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 7 CGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGG 66
|||||||||||| ||| || ||||||| ||| |||||| || ||||||| |||| ||
Sbjct 1295 CGGTGGATGCCTTGGCACTGAGAGGCGATGAAAGACGTGGTACGCTGCGATAAGCCTTGG 1354
Query 67 GGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114
||| || | | | |||||||| ||| || |||||||| |||||
Sbjct 1355 GGAGCTGCGAACAAGCTTTGATCCGAGGATTTCTGAATGGGGAAACCC 1402
>seq7282
Length=3089
Score = 75.2 bits (82), Expect = 1e-11
Identities = 73/93 (78%), Gaps = 1/93 (1%)
Strand=Plus/Plus
Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67
||||||||||| ||| | |||||| ||| ||||||||| |||||| ||||| ||||
Sbjct 2918 GGTGGATGCCTTGGCGATGATAGGCGACGAAAGACGTGATAGCCTGCGATAAGCTTCGGG 2977
Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATC 99
|| ||||| ||| | |||||||| |||| ||
Sbjct 2978 GAGCTGGCAAATAAGCTTTGATCCGGAGATTTC 3010
>seq6860
Length=6169
Score = 73.4 bits (80), Expect = 4e-11
Identities = 81/108 (75%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 7 CGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGG 66
|||||||||||| ||| || ||||||| |||||||||| || ||||||| |||| |
Sbjct 3297 CGGTGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTGCTACGCTGCGATAAGCCGTGA 3356
Query 67 GGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114
||| || | | ||||||| ||| ||||||||||| |||||
Sbjct 3357 GGAGCTGCGAAGGAGCTTTGATCCACGGATTTCCGAATGGGGAAACCC 3404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476730442479
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |