Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01000383.1
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
seq9910 600 3e-169
seq7320 488 1e-135
seq6860 327 3e-87
>seq9910
Length=308115
Score = 600 bits (664), Expect = 3e-169
Identities = 377/407 (93%), Gaps = 0/407 (0%)
Strand=Plus/Minus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260863 TACCGTAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 260804
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 260803 GAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTATGTAAGACAGATGT 260744
Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182
|||||||||||||| |||||||||| |||||||||||||||| | ||||||| | |||
Sbjct 260743 GAAATCCCCGGGCTCAACCTGGGAACTGCATTTGTGACTGCATGGCTAGAGTACGGTAGA 260684
Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242
||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 260683 GGGGGATGGAATTCCGCGTGTAGCAGTGAAATGCGTAGATATGCGGAGGAACACCGATGG 260624
Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 260623 CGAAGGCAATCCCCTGGACCTGTACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 260564
Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 260563 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATGTCAACTAGTTGTTGGGGATTCATT 260504
Query 363 TCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 260503 TCCTTAGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAGTAC 260457
>seq7320
Length=4144
Score = 488 bits (540), Expect = 1e-135
Identities = 351/400 (88%), Gaps = 5/400 (1%)
Strand=Plus/Plus
Query 12 AATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAA 71
|| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3 AAGAAGCA--GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTAA 60
Query 72 TCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCC 131
|||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct 61 TCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGCCTGATAAGTCAGATGTGAAATCCCC 120
Query 132 GGGCTTAACCTGGGAATTGCATTTGTGACT-GCACGACTAGAGTGTGTCAGAGGGGGGTG 190
| ||| ||| |||||| ||| |||| ||| || | ||||| | ||||||||||||||
Sbjct 121 GAGCTCAACTTGGGAACTGCGTTTGAAACTATCAAG-CTAGAATATGTCAGAGGGGGGTA 179
Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCA 250
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 180 GAATTCCACGTGTAGCAGTGAAATGCGTAGAGATGTGGAGGAATACCAATGGCGAAGGCA 239
Query 251 GCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 310
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GCCCCCTGGGATAATATTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 299
Query 311 ACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGA-TTTACTTCCTTGG 369
|||||||||||||||||| |||||||| |||||| ||||||| | | || | ||||
Sbjct 300 ACCCTGGTAGTCCACGCCGTAAACGATGAAAACTAGCTGTTGGGAAGTATAGTGTTTTGG 359
Query 370 TAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
| || ||||||||| | ||||| ||||||||||| |||
Sbjct 360 TGGCGCAGCTAACGCATTAAGTTATCCGCCTGGGGAGTAC 399
>seq6860
Length=6169
Score = 327 bits (362), Expect = 3e-87
Identities = 321/409 (78%), Gaps = 4/409 (1%)
Strand=Plus/Plus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|||| |||||||||| |||||||||| |||||||||||||||||||||||| |||| ||
Sbjct 1397 TACCGCAAGAATAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGC 1456
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||| ||||||| ||||||||||||| ||||| |||||| | | |||| |||| ||
Sbjct 1457 TAGCGTTGCTCGGAATCACTGGGCGTAAAGGGTGCGTAGGCGGGTCTTTAAGTCAGGGGT 1516
Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGA-CTAGAGTGTGTCAG 181
||||||| | ||| ||| ||| ||| |||| |||| | || || |||| | ||
Sbjct 1517 GAAATCCTGGAGCTCAACTCCAGAACTGCCTTTGATACTG-AGGATCTTGAGTCCGGAAG 1575
Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241
||| | |||||| | | |||||| ||||||| ||||||||| | | |||||||| ||
Sbjct 1576 AGGTGAGTGGAACTGCGAGTGTAGAGGTGAAATTCGTAGATATTCGCAAGAACACCAGTG 1635
Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301
|||||||| || | |||| ||||||||| | ||||||||||||||||||||||||
Sbjct 1636 GCGAAGGCGGCTCACTGGTCCGGTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACA 1695
Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGA-TTTA 360
|||||||||||||||||||||||||| |||||||| | || |||||||| ||||
Sbjct 1696 GGATTAGATACCCTGGTAGTCCACGCTGTAAACGATGAATGCCAGCCGTTGGGGAGTTTA 1755
Query 361 CTTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
| || | || || || |||||| | ||| ||||||||||| |||
Sbjct 1756 C-TCTTCAGTGGCGCAGTTAACGCTTTAAGCATTCCGCCTGGGGAGTAC 1803
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1289405799136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |