Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq9910 600 3e-169 seq7320 488 1e-135 seq6860 327 3e-87 >seq9910 Length=308115 Score = 600 bits (664), Expect = 3e-169 Identities = 377/407 (93%), Gaps = 0/407 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 260863 TACCGTAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 260804 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 260803 GAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTATGTAAGACAGATGT 260744 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 |||||||||||||| |||||||||| |||||||||||||||| | ||||||| | ||| Sbjct 260743 GAAATCCCCGGGCTCAACCTGGGAACTGCATTTGTGACTGCATGGCTAGAGTACGGTAGA 260684 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 ||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 260683 GGGGGATGGAATTCCGCGTGTAGCAGTGAAATGCGTAGATATGCGGAGGAACACCGATGG 260624 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||||||| ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 260623 CGAAGGCAATCCCCTGGACCTGTACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 260564 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | Sbjct 260563 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATGTCAACTAGTTGTTGGGGATTCATT 260504 Query 363 TCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 ||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 260503 TCCTTAGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAGTAC 260457 >seq7320 Length=4144 Score = 488 bits (540), Expect = 1e-135 Identities = 351/400 (88%), Gaps = 5/400 (1%) Strand=Plus/Plus Query 12 AATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAA 71 || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 3 AAGAAGCA--GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTAA 60 Query 72 TCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCC 131 |||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| Sbjct 61 TCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGCCTGATAAGTCAGATGTGAAATCCCC 120 Query 132 GGGCTTAACCTGGGAATTGCATTTGTGACT-GCACGACTAGAGTGTGTCAGAGGGGGGTG 190 | ||| ||| |||||| ||| |||| ||| || | ||||| | |||||||||||||| Sbjct 121 GAGCTCAACTTGGGAACTGCGTTTGAAACTATCAAG-CTAGAATATGTCAGAGGGGGGTA 179 Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCA 250 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 180 GAATTCCACGTGTAGCAGTGAAATGCGTAGAGATGTGGAGGAATACCAATGGCGAAGGCA 239 Query 251 GCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 310 |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 GCCCCCTGGGATAATATTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 299 Query 311 ACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGA-TTTACTTCCTTGG 369 |||||||||||||||||| |||||||| |||||| ||||||| | | || | |||| Sbjct 300 ACCCTGGTAGTCCACGCCGTAAACGATGAAAACTAGCTGTTGGGAAGTATAGTGTTTTGG 359 Query 370 TAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | || ||||||||| | ||||| ||||||||||| ||| Sbjct 360 TGGCGCAGCTAACGCATTAAGTTATCCGCCTGGGGAGTAC 399 >seq6860 Length=6169 Score = 327 bits (362), Expect = 3e-87 Identities = 321/409 (78%), Gaps = 4/409 (1%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| |||||||||| |||||||||| |||||||||||||||||||||||| |||| || Sbjct 1397 TACCGCAAGAATAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGC 1456 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||| ||||||| ||||||||||||| ||||| |||||| | | |||| |||| || Sbjct 1457 TAGCGTTGCTCGGAATCACTGGGCGTAAAGGGTGCGTAGGCGGGTCTTTAAGTCAGGGGT 1516 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGA-CTAGAGTGTGTCAG 181 ||||||| | ||| ||| ||| ||| |||| |||| | || || |||| | || Sbjct 1517 GAAATCCTGGAGCTCAACTCCAGAACTGCCTTTGATACTG-AGGATCTTGAGTCCGGAAG 1575 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 ||| | |||||| | | |||||| ||||||| ||||||||| | | |||||||| || Sbjct 1576 AGGTGAGTGGAACTGCGAGTGTAGAGGTGAAATTCGTAGATATTCGCAAGAACACCAGTG 1635 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 |||||||| || | |||| ||||||||| | |||||||||||||||||||||||| Sbjct 1636 GCGAAGGCGGCTCACTGGTCCGGTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACA 1695 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGA-TTTA 360 |||||||||||||||||||||||||| |||||||| | || |||||||| |||| Sbjct 1696 GGATTAGATACCCTGGTAGTCCACGCTGTAAACGATGAATGCCAGCCGTTGGGGAGTTTA 1755 Query 361 CTTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | || | || || || |||||| | ||| ||||||||||| ||| Sbjct 1756 C-TCTTCAGTGGCGCAGTTAACGCTTTAAGCATTCCGCCTGGGGAGTAC 1803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289405799136