Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq7450 159 5e-37
seq7320 147 3e-33
seq8424 145 1e-32
seq10654 132 7e-29
seq6860 132 7e-29
seq11968 129 8e-28
seq6993 120 4e-25
seq9910 114 2e-23
seq8549 89.7 7e-16
>seq7450
Length=405
Score = 159 bits (176), Expect = 5e-37
Identities = 184/248 (74%), Gaps = 11/248 (4%)
Strand=Plus/Minus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| |||||| ||||||||||||||||| || ||||| || ||||| | ||||||
Sbjct 358 CTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCATCTTACGAT-TTCGCAG 300
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
| ||||||||||| |||||||| || ||| || ||| ||| |||| || |||
Sbjct 299 AGCCCTGTGTTTTTGTTAAACAGTTGCCACCCCCTGGTCTGTGCCCCCACTGCCCGCT-- 242
Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180
| | | |||| ||| | |||| |||||||||||||||| | |||||||
Sbjct 241 --------TGCGCGAGCAATGGGCCTCCTTATCCCGAAGTTACGGGGGGAAATTGCCGAG 190
Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240
|||||| | || ||||| | | | |||||| |||| ||||||| | ||||||||||||||
Sbjct 189 TTCCTTCAACATAGTTCTCTCAAGCGCCTTGGTATACTCTACCAGTCCACCTGTGTCGGT 130
Query 241 TTACGGTA 248
|| ||||
Sbjct 129 TTCGGGTA 122
>seq7320
Length=4144
Score = 147 bits (162), Expect = 3e-33
Identities = 184/249 (74%), Gaps = 9/249 (4%)
Strand=Plus/Minus
Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66
|||||| |||||||||||||||| || ||||| || |||| | || || ||| | ||
Sbjct 3594 CTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGAGTGCT 3536
Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCT-CAACACG 125
||||||||| ||||||||||| || || ||| |||| ||| | | ||| | | | |
Sbjct 3535 GTGTTTTTATTAAACAGTCGCAGCCACCTTTTCACTGCAACCTCATCATGCTTCGAGA-G 3477
Query 126 TCGTTCACCAG------CAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179
| || | | | | ||| | ||||||||||||||||||| || | ||||||||
Sbjct 3476 TAAATCTCTACACATTACCGAGGCGCACCTTCTCCCGAAGTTACGGTGCTAATTTGCCGA 3417
Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239
|||||| || |||| | | | |||||||| |||||| |||| |||||||||||||
Sbjct 3416 GTTCCTTCTCCCGGGTTCTCTCAAGCGCCTTAGAATTCTCATCCTGCCCACCTGTGTCGG 3357
Query 240 TTTACGGTA 248
||| |||||
Sbjct 3356 TTTGCGGTA 3348
>seq8424
Length=263062
Score = 145 bits (160), Expect = 1e-32
Identities = 182/248 (73%), Gaps = 10/248 (4%)
Strand=Plus/Plus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| ||||||| ||||||||||||||||| || ||||| ||| ||| || |||||||
Sbjct 260101 CTTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTT-GCGGCTTCGCAG 260159
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
| |||||| |||| |||||||||||| ||| || ||| ||| ||| |||
Sbjct 260160 AGCCCTGTGGTTTTGATAAACAGTCGCTACCCCCTGGTCTGTGCCACC--------CTC- 260210
Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180
|| | | | | | | | || | ||||| ||||||||||| | || ||||||||
Sbjct 260211 ACCCTGCTTGCGCAGGAAAGGGTCACGCTTCTTCCGAAGTTACGCGTGCAATTTGCCGAG 260270
Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240
|||||| | || ||||| | | | |||||| | || | || |||||||||| ||||||||
Sbjct 260271 TTCCTTCAGCATAGTTCTCTCAAGCGCCTTGGCATACACTGCCTGACCACCAGTGTCGGT 260330
Query 241 TTACGGTA 248
|| ||||
Sbjct 260331 TTCGGGTA 260338
>seq10654
Length=1634
Score = 132 bits (146), Expect = 7e-29
Identities = 179/246 (73%), Gaps = 5/246 (2%)
Strand=Plus/Minus
Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66
|||||| |||||||||||||||| || ||||| || |||| | || || ||| | ||
Sbjct 1256 CTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGAGTGCT 1198
Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126
||||||||| ||||||||||| || | ||| | ||| ||| | |||| ||
Sbjct 1197 GTGTTTTTATTAAACAGTCGCAGCCACCGATTTTTTGCAACCGCTTTGGGCTCCCTTTGT 1138
Query 127 C---GTTCACCAGCA-GTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATT 182
||||||| | | |||| ||||||||||||||||||| || |||||||| ||
Sbjct 1137 ACAAGTTCACCTACTTGCGGCATACCTTCTCCCGAAGTTACGGTATCAATTTGCCGAGTT 1078
Query 183 CCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242
|||| ||| ||||| | | | |||||||| || ||| | | |||| ||||||||||
Sbjct 1077 CCTTCTCCAGAGTTCTCTCAAGCGCCTTAGAATACTCATCTCGCGCACCAGTGTCGGTTT 1018
Query 243 ACGGTA 248
|||||
Sbjct 1017 GCGGTA 1012
>seq6860
Length=6169
Score = 132 bits (146), Expect = 7e-29
Identities = 181/249 (73%), Gaps = 13/249 (5%)
Strand=Plus/Minus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| |||||| ||||||||||||||||| || ||||| || ||| | | ||||||
Sbjct 5286 CTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCATCTTGCGAT-TTCGCAG 5228
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
| ||||||||||| |||||||| || ||| || ||| ||| || |||
Sbjct 5227 AGCCCTGTGTTTTTGCTAAACAGTTGCCACCCCCTGGTCTGTGC--------CCCTCTCG 5176
Query 121 ACACGTCGTTCACCAGC-AGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179
|| | | | | || | | ||| | |||| |||||||||||||| | | |||||||
Sbjct 5175 AC--GGCTTGCGCCGACGAAAGGC-CTCCTTATCCCGAAGTTACGGAGGTAAATTGCCGA 5119
Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239
|||||| | || ||||| | | | |||||| |||| ||||||| | |||||||||||||
Sbjct 5118 GTTCCTTCAACATAGTTCTCTCAAGCGCCTTGGTATACTCTACCAGTCCACCTGTGTCGG 5059
Query 240 TTTACGGTA 248
||| ||||
Sbjct 5058 TTTCGGGTA 5050
>seq11968
Length=3642
Score = 129 bits (142), Expect = 8e-28
Identities = 191/270 (71%), Gaps = 23/270 (9%)
Strand=Plus/Minus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| |||||| ||||||||||||||||| || ||||| ||| ||| | |||||||
Sbjct 3070 CTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTTA-GACTTCGCAG 3012
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCT-- 118
| |||||||||| |||||||||||| ||| || ||| ||| |||| | |||
Sbjct 3011 AGCCCTGTGTTTTAGGTAAACAGTCGCCACCCCCTGGTCTGTGCCCCCACATACTGCTTG 2952
Query 119 --CAACACGTCG------TTCACCAGCAGT-------GGCAC-----CCCTTCTCCCGAA 158
|| ||| | | || || | ||| || | | ||| |||||||
Sbjct 2951 CGCAGCACATGGGCCTCCTTATCCCGAAGTTACGGAGGGAATTTTCACGCTTATCCCGAA 2892
Query 159 GTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCT 218
|||||| | || |||||||| |||||| | || ||||| | | | |||||| |||| ||
Sbjct 2891 GTTACGCGTGCAATTTGCCGAGTTCCTTCAGCATAGTTCTCTCAAGCGCCTTGGTATACT 2832
Query 219 CTACCTGACCACCTGTGTCGGTTTACGGTA 248
||||| | |||||||||||||||| ||||
Sbjct 2831 CTACCAGTCCACCTGTGTCGGTTTCGGGTA 2802
>seq6993
Length=5165
Score = 120 bits (132), Expect = 4e-25
Identities = 179/249 (72%), Gaps = 10/249 (4%)
Strand=Plus/Minus
Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66
|||||| |||||||||||||||| || ||||| || |||| | || || ||| | ||
Sbjct 2521 CTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGAGTGCT 2463
Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCAC--CACCAGCTCAA--- 121
||||||||| ||||||||||| || | || ||| ||| | |||| |||
Sbjct 2462 GTGTTTTTATTAAACAGTCGCAGCCACCATTTTATTGCAACCCCTTCACC--CTCCTGGC 2405
Query 122 -CACGTCGTTCAC-CAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179
|| | | ||| | || ||| |||| |||||||||||||| ||| ||||||||
Sbjct 2404 GCAGGCCAGTCAAACTACAAGGGCGTACCTTATCCCGAAGTTACGGTACCAATTTGCCGA 2345
Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239
|||||| || ||||| | | | |||||||| || ||| | | |||||||||||||
Sbjct 2344 GTTCCTTCTCCCGAGTTCTCTCAAGCGCCTTAGAATACTCATCTCGCCCACCTGTGTCGG 2285
Query 240 TTTACGGTA 248
||| |||||
Sbjct 2284 TTTGCGGTA 2276
>seq9910
Length=308115
Score = 114 bits (126), Expect = 2e-23
Identities = 168/235 (71%), Gaps = 6/235 (3%)
Strand=Plus/Plus
Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61
||| ||||||| |||||||||||| ||| || ||||| || |||| | || || |||
Sbjct 257262 TTAACCTTCCAGCACCGGGCAGGCATCACACCCTATACGTCCACTTTC-GTGTTTGCAGA 257320
Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121
| || |||||||| |||||||| || || | |||| | | ||| |||||||
Sbjct 257321 GTGCTATGTTTTTAATAAACAGTTGCAGGGGCCTGGTTTCTGTGGCTGCCAATAGCTCAA 257380
Query 122 ----CACGTCGT-TCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGC 176
|| ||| | ||||| ||| || ||||||||||||||||||| |||||||||
Sbjct 257381 GGAGCAAGTCCTATCACCGTCAGCAGCGTACCTTCTCCCGAAGTTACGGTACCATTTTGC 257440
Query 177 CGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACC 231
| | |||||| | || || || | | ||| || || | ||| ||||||||||
Sbjct 257441 CTAGTTCCTTCAGCAGAGGTCTCTTAAGCGCTTTGGTCTACTCGGCCTGACCACC 257495
>seq8549
Length=2370
Score = 89.7 bits (98), Expect = 7e-16
Identities = 76/94 (81%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 155 CGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTA 214
||||| ||||| | || |||||||| |||||| | ||| ||| | | | |||||| |||
Sbjct 1 CGAAGGTACGGAGGCAATTTGCCGAGTTCCTTCAGGACACTTCTCTCAAGCGCCTTGGTA 60
Query 215 TTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| ||||||| |||||||||||||||||| ||||
Sbjct 61 TACTCTACCAGACCACCTGTGTCGGTTTCGGGTA 94
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694298698107
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |