Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq7450 159 5e-37 seq7320 147 3e-33 seq8424 145 1e-32 seq10654 132 7e-29 seq6860 132 7e-29 seq11968 129 8e-28 seq6993 120 4e-25 seq9910 114 2e-23 seq8549 89.7 7e-16 >seq7450 Length=405 Score = 159 bits (176), Expect = 5e-37 Identities = 184/248 (74%), Gaps = 11/248 (4%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| || ||||| | |||||| Sbjct 358 CTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCATCTTACGAT-TTCGCAG 300 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| |||||||| || ||| || ||| ||| |||| || ||| Sbjct 299 AGCCCTGTGTTTTTGTTAAACAGTTGCCACCCCCTGGTCTGTGCCCCCACTGCCCGCT-- 242 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | | | |||| ||| | |||| |||||||||||||||| | ||||||| Sbjct 241 --------TGCGCGAGCAATGGGCCTCCTTATCCCGAAGTTACGGGGGGAAATTGCCGAG 190 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||| | || ||||| | | | |||||| |||| ||||||| | |||||||||||||| Sbjct 189 TTCCTTCAACATAGTTCTCTCAAGCGCCTTGGTATACTCTACCAGTCCACCTGTGTCGGT 130 Query 241 TTACGGTA 248 || |||| Sbjct 129 TTCGGGTA 122 >seq7320 Length=4144 Score = 147 bits (162), Expect = 3e-33 Identities = 184/249 (74%), Gaps = 9/249 (4%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| |||||||||||||||| || ||||| || |||| | || || ||| | || Sbjct 3594 CTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGAGTGCT 3536 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCT-CAACACG 125 ||||||||| ||||||||||| || || ||| |||| ||| | | ||| | | | | Sbjct 3535 GTGTTTTTATTAAACAGTCGCAGCCACCTTTTCACTGCAACCTCATCATGCTTCGAGA-G 3477 Query 126 TCGTTCACCAG------CAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 | || | | | | ||| | ||||||||||||||||||| || | |||||||| Sbjct 3476 TAAATCTCTACACATTACCGAGGCGCACCTTCTCCCGAAGTTACGGTGCTAATTTGCCGA 3417 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| || |||| | | | |||||||| |||||| |||| ||||||||||||| Sbjct 3416 GTTCCTTCTCCCGGGTTCTCTCAAGCGCCTTAGAATTCTCATCCTGCCCACCTGTGTCGG 3357 Query 240 TTTACGGTA 248 ||| ||||| Sbjct 3356 TTTGCGGTA 3348 >seq8424 Length=263062 Score = 145 bits (160), Expect = 1e-32 Identities = 182/248 (73%), Gaps = 10/248 (4%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||||||||| || ||||| ||| ||| || ||||||| Sbjct 260101 CTTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTT-GCGGCTTCGCAG 260159 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | |||||| |||| |||||||||||| ||| || ||| ||| ||| ||| Sbjct 260160 AGCCCTGTGGTTTTGATAAACAGTCGCTACCCCCTGGTCTGTGCCACC--------CTC- 260210 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || | | | | | | | || | ||||| ||||||||||| | || |||||||| Sbjct 260211 ACCCTGCTTGCGCAGGAAAGGGTCACGCTTCTTCCGAAGTTACGCGTGCAATTTGCCGAG 260270 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||| | || ||||| | | | |||||| | || | || |||||||||| |||||||| Sbjct 260271 TTCCTTCAGCATAGTTCTCTCAAGCGCCTTGGCATACACTGCCTGACCACCAGTGTCGGT 260330 Query 241 TTACGGTA 248 || |||| Sbjct 260331 TTCGGGTA 260338 >seq10654 Length=1634 Score = 132 bits (146), Expect = 7e-29 Identities = 179/246 (73%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| |||||||||||||||| || ||||| || |||| | || || ||| | || Sbjct 1256 CTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGAGTGCT 1198 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||||| ||||||||||| || | ||| | ||| ||| | |||| || Sbjct 1197 GTGTTTTTATTAAACAGTCGCAGCCACCGATTTTTTGCAACCGCTTTGGGCTCCCTTTGT 1138 Query 127 C---GTTCACCAGCA-GTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATT 182 ||||||| | | |||| ||||||||||||||||||| || |||||||| || Sbjct 1137 ACAAGTTCACCTACTTGCGGCATACCTTCTCCCGAAGTTACGGTATCAATTTGCCGAGTT 1078 Query 183 CCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 |||| ||| ||||| | | | |||||||| || ||| | | |||| |||||||||| Sbjct 1077 CCTTCTCCAGAGTTCTCTCAAGCGCCTTAGAATACTCATCTCGCGCACCAGTGTCGGTTT 1018 Query 243 ACGGTA 248 ||||| Sbjct 1017 GCGGTA 1012 >seq6860 Length=6169 Score = 132 bits (146), Expect = 7e-29 Identities = 181/249 (73%), Gaps = 13/249 (5%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| || ||| | | |||||| Sbjct 5286 CTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCATCTTGCGAT-TTCGCAG 5228 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| |||||||| || ||| || ||| ||| || ||| Sbjct 5227 AGCCCTGTGTTTTTGCTAAACAGTTGCCACCCCCTGGTCTGTGC--------CCCTCTCG 5176 Query 121 ACACGTCGTTCACCAGC-AGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 || | | | | || | | ||| | |||| |||||||||||||| | | ||||||| Sbjct 5175 AC--GGCTTGCGCCGACGAAAGGC-CTCCTTATCCCGAAGTTACGGAGGTAAATTGCCGA 5119 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| | || ||||| | | | |||||| |||| ||||||| | ||||||||||||| Sbjct 5118 GTTCCTTCAACATAGTTCTCTCAAGCGCCTTGGTATACTCTACCAGTCCACCTGTGTCGG 5059 Query 240 TTTACGGTA 248 ||| |||| Sbjct 5058 TTTCGGGTA 5050 >seq11968 Length=3642 Score = 129 bits (142), Expect = 8e-28 Identities = 191/270 (71%), Gaps = 23/270 (9%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| ||| ||| | ||||||| Sbjct 3070 CTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTTA-GACTTCGCAG 3012 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCT-- 118 | |||||||||| |||||||||||| ||| || ||| ||| |||| | ||| Sbjct 3011 AGCCCTGTGTTTTAGGTAAACAGTCGCCACCCCCTGGTCTGTGCCCCCACATACTGCTTG 2952 Query 119 --CAACACGTCG------TTCACCAGCAGT-------GGCAC-----CCCTTCTCCCGAA 158 || ||| | | || || | ||| || | | ||| ||||||| Sbjct 2951 CGCAGCACATGGGCCTCCTTATCCCGAAGTTACGGAGGGAATTTTCACGCTTATCCCGAA 2892 Query 159 GTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCT 218 |||||| | || |||||||| |||||| | || ||||| | | | |||||| |||| || Sbjct 2891 GTTACGCGTGCAATTTGCCGAGTTCCTTCAGCATAGTTCTCTCAAGCGCCTTGGTATACT 2832 Query 219 CTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||||| | |||||||||||||||| |||| Sbjct 2831 CTACCAGTCCACCTGTGTCGGTTTCGGGTA 2802 >seq6993 Length=5165 Score = 120 bits (132), Expect = 4e-25 Identities = 179/249 (72%), Gaps = 10/249 (4%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| |||||||||||||||| || ||||| || |||| | || || ||| | || Sbjct 2521 CTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGAGTGCT 2463 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCAC--CACCAGCTCAA--- 121 ||||||||| ||||||||||| || | || ||| ||| | |||| ||| Sbjct 2462 GTGTTTTTATTAAACAGTCGCAGCCACCATTTTATTGCAACCCCTTCACC--CTCCTGGC 2405 Query 122 -CACGTCGTTCAC-CAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 || | | ||| | || ||| |||| |||||||||||||| ||| |||||||| Sbjct 2404 GCAGGCCAGTCAAACTACAAGGGCGTACCTTATCCCGAAGTTACGGTACCAATTTGCCGA 2345 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| || ||||| | | | |||||||| || ||| | | ||||||||||||| Sbjct 2344 GTTCCTTCTCCCGAGTTCTCTCAAGCGCCTTAGAATACTCATCTCGCCCACCTGTGTCGG 2285 Query 240 TTTACGGTA 248 ||| ||||| Sbjct 2284 TTTGCGGTA 2276 >seq9910 Length=308115 Score = 114 bits (126), Expect = 2e-23 Identities = 168/235 (71%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||||| |||||||||||| ||| || ||||| || |||| | || || ||| Sbjct 257262 TTAACCTTCCAGCACCGGGCAGGCATCACACCCTATACGTCCACTTTC-GTGTTTGCAGA 257320 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | || |||||||| |||||||| || || | |||| | | ||| ||||||| Sbjct 257321 GTGCTATGTTTTTAATAAACAGTTGCAGGGGCCTGGTTTCTGTGGCTGCCAATAGCTCAA 257380 Query 122 ----CACGTCGT-TCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGC 176 || ||| | ||||| ||| || ||||||||||||||||||| ||||||||| Sbjct 257381 GGAGCAAGTCCTATCACCGTCAGCAGCGTACCTTCTCCCGAAGTTACGGTACCATTTTGC 257440 Query 177 CGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACC 231 | | |||||| | || || || | | ||| || || | ||| |||||||||| Sbjct 257441 CTAGTTCCTTCAGCAGAGGTCTCTTAAGCGCTTTGGTCTACTCGGCCTGACCACC 257495 >seq8549 Length=2370 Score = 89.7 bits (98), Expect = 7e-16 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 155 CGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTA 214 ||||| ||||| | || |||||||| |||||| | ||| ||| | | | |||||| ||| Sbjct 1 CGAAGGTACGGAGGCAATTTGCCGAGTTCCTTCAGGACACTTCTCTCAAGCGCCTTGGTA 60 Query 215 TTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | ||||||| |||||||||||||||||| |||| Sbjct 61 TACTCTACCAGACCACCTGTGTCGGTTTCGGGTA 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694298698107