Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq7450 104 2e-20 seq6860 95.1 1e-17 seq11968 80.6 3e-13 seq6993 80.6 3e-13 seq7320 77.0 3e-12 >seq7450 Length=405 Score = 104 bits (114), Expect = 2e-20 Identities = 131/179 (73%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || | | ||| || ||||| |||||||||||| ||| | | | |||| Sbjct 128 AAACCGACACAGGTGGACTGGTAGAGTATACCAAGGCGCTTGAGAGAACTATGTTGAAGG 187 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTA----CCCAGAAATGGG 140 |||| ||||| | ||| ||||||||||||||| | | ||| | | || ||| Sbjct 188 AACTCGGCAATTTCCCCCCGTAACTTCGGGATAAGGAGGCCCATTGCTCGCGCAAGCGGG 247 Query 141 A---GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 ||| ||| ||| ||| |||||||||||||||||||||||||||| ||| || Sbjct 248 CAGTGGGGGCACAGACCAGGGGGTGGCAACTGTTTAACAAAAACACAGGGCTCTGCGAA 306 >seq6860 Length=6169 Score = 95.1 bits (104), Expect = 1e-17 Identities = 130/180 (72%), Gaps = 9/180 (5%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || | | ||| || ||||| |||||||||||| ||| | | | |||| Sbjct 5056 AAACCGACACAGGTGGACTGGTAGAGTATACCAAGGCGCTTGAGAGAACTATGTTGAAGG 5115 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTAC-------CCAGAAAT 137 |||| ||||| | | | ||||||||||||||| | | || | | | || | Sbjct 5116 AACTCGGCAATTTACCTCCGTAACTTCGGGATAAGGAGGCCTTTCGTCGGCGCAAGCCGT 5175 Query 138 -GGGAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | ||||| ||| ||| ||| |||||||||||| ||||||||||||||| ||| || Sbjct 5176 CGAGAGGG-GCACAGACCAGGGGGTGGCAACTGTTTAGCAAAAACACAGGGCTCTGCGAA 5234 >seq11968 Length=3642 Score = 80.6 bits (88), Expect = 3e-13 Identities = 74/94 (79%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || | | ||| || ||||| |||||||||||| ||| | | | |||| Sbjct 2808 AAACCGACACAGGTGGACTGGTAGAGTATACCAAGGCGCTTGAGAGAACTATGCTGAAGG 2867 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 |||| |||||| || | ||||||||||||||| Sbjct 2868 AACTCGGCAAATTGCACGCGTAACTTCGGGATAA 2901 >seq6993 Length=5165 Score = 80.6 bits (88), Expect = 3e-13 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| |||||| || | || | ||| ||| |||||||||||||| ||| || | Sbjct 2279 CGCAAACCGACACAGGTGGGCGAGATGAGTATTCTAAGGCGCTTGAGAGAACTCGGGAGA 2338 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 ||||||| |||||| || | ||||||||||||||| Sbjct 2339 AGGAACTCGGCAAATTGGTACCGTAACTTCGGGATAA 2375 >seq7320 Length=4144 Score = 77.0 bits (84), Expect = 3e-12 Identities = 75/97 (77%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| |||||| || | | || ||| || |||||||||||||| ||| | || | Sbjct 3351 CGCAAACCGACACAGGTGGGCAGGATGAGAATTCTAAGGCGCTTGAGAGAACCCGGGAGA 3410 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 ||||||| |||||| | | | |||||||||||| || Sbjct 3411 AGGAACTCGGCAAATTAGCACCGTAACTTCGGGAGAA 3447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531122506386