Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01000567.1
Length=197
Score E
Sequences producing significant alignments: (Bits) Value
seq7450 104 2e-20
seq6860 95.1 1e-17
seq11968 80.6 3e-13
seq6993 80.6 3e-13
seq7320 77.0 3e-12
>seq7450
Length=405
Score = 104 bits (114), Expect = 2e-20
Identities = 131/179 (73%), Gaps = 7/179 (4%)
Strand=Plus/Plus
Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84
|||| |||||| || | | ||| || ||||| |||||||||||| ||| | | | ||||
Sbjct 128 AAACCGACACAGGTGGACTGGTAGAGTATACCAAGGCGCTTGAGAGAACTATGTTGAAGG 187
Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTA----CCCAGAAATGGG 140
|||| ||||| | ||| ||||||||||||||| | | ||| | | || |||
Sbjct 188 AACTCGGCAATTTCCCCCCGTAACTTCGGGATAAGGAGGCCCATTGCTCGCGCAAGCGGG 247
Query 141 A---GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196
||| ||| ||| ||| |||||||||||||||||||||||||||| ||| ||
Sbjct 248 CAGTGGGGGCACAGACCAGGGGGTGGCAACTGTTTAACAAAAACACAGGGCTCTGCGAA 306
>seq6860
Length=6169
Score = 95.1 bits (104), Expect = 1e-17
Identities = 130/180 (72%), Gaps = 9/180 (5%)
Strand=Plus/Plus
Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84
|||| |||||| || | | ||| || ||||| |||||||||||| ||| | | | ||||
Sbjct 5056 AAACCGACACAGGTGGACTGGTAGAGTATACCAAGGCGCTTGAGAGAACTATGTTGAAGG 5115
Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTAC-------CCAGAAAT 137
|||| ||||| | | | ||||||||||||||| | | || | | | || |
Sbjct 5116 AACTCGGCAATTTACCTCCGTAACTTCGGGATAAGGAGGCCTTTCGTCGGCGCAAGCCGT 5175
Query 138 -GGGAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196
| ||||| ||| ||| ||| |||||||||||| ||||||||||||||| ||| ||
Sbjct 5176 CGAGAGGG-GCACAGACCAGGGGGTGGCAACTGTTTAGCAAAAACACAGGGCTCTGCGAA 5234
>seq11968
Length=3642
Score = 80.6 bits (88), Expect = 3e-13
Identities = 74/94 (79%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84
|||| |||||| || | | ||| || ||||| |||||||||||| ||| | | | ||||
Sbjct 2808 AAACCGACACAGGTGGACTGGTAGAGTATACCAAGGCGCTTGAGAGAACTATGCTGAAGG 2867
Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118
|||| |||||| || | |||||||||||||||
Sbjct 2868 AACTCGGCAAATTGCACGCGTAACTTCGGGATAA 2901
>seq6993
Length=5165
Score = 80.6 bits (88), Expect = 3e-13
Identities = 76/97 (78%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81
||||||| |||||| || | || | ||| ||| |||||||||||||| ||| || |
Sbjct 2279 CGCAAACCGACACAGGTGGGCGAGATGAGTATTCTAAGGCGCTTGAGAGAACTCGGGAGA 2338
Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118
||||||| |||||| || | |||||||||||||||
Sbjct 2339 AGGAACTCGGCAAATTGGTACCGTAACTTCGGGATAA 2375
>seq7320
Length=4144
Score = 77.0 bits (84), Expect = 3e-12
Identities = 75/97 (77%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81
||||||| |||||| || | | || ||| || |||||||||||||| ||| | || |
Sbjct 3351 CGCAAACCGACACAGGTGGGCAGGATGAGAATTCTAAGGCGCTTGAGAGAACCCGGGAGA 3410
Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118
||||||| |||||| | | | |||||||||||| ||
Sbjct 3411 AGGAACTCGGCAAATTAGCACCGTAACTTCGGGAGAA 3447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531122506386
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |