Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01000599.1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
seq9910 178 1e-42
seq10654 152 5e-35
seq7320 152 5e-35
seq6993 152 5e-35
seq11968 102 8e-20
seq8424 102 8e-20
seq7450 102 8e-20
seq6860 102 8e-20
>seq9910
Length=308115
Score = 178 bits (196), Expect = 1e-42
Identities = 121/136 (89%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 23 GGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAA 82
||||||||||| | |||| || | | | ||| |||||||| |||| ||||||||||||
Sbjct 257391 GGACTTGCTCCTTGAGCTATTGGCAGCCACAGAAACCAGGCCCCTGCAACTGTTTATTAA 257332
Query 83 AAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCC 142
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 257331 AAACATAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGATGCCTGCCCGGTGCT 257272
Query 143 GGAAGGTTAATTGATG 158
||||||||||||||||
Sbjct 257271 GGAAGGTTAATTGATG 257256
>seq10654
Length=1634
Score = 152 bits (168), Expect = 5e-35
Identities = 90/94 (96%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 65 GCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTG 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 GCTGCGACTGTTTAATAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTG 1233
Query 125 TGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158
||||||||||||||||| ||||| |||| |||||
Sbjct 1234 TGACGCCTGCCCGGTGCTGGAAGATTAAATGATG 1267
>seq7320
Length=4144
Score = 152 bits (168), Expect = 5e-35
Identities = 90/94 (96%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 65 GCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTG 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3512 GCTGCGACTGTTTAATAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTG 3571
Query 125 TGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158
||||||||||||||||| ||||| |||| |||||
Sbjct 3572 TGACGCCTGCCCGGTGCTGGAAGATTAAATGATG 3605
>seq6993
Length=5165
Score = 152 bits (168), Expect = 5e-35
Identities = 90/94 (96%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 65 GCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTG 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2439 GCTGCGACTGTTTAATAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTG 2498
Query 125 TGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158
||||||||||||||||| ||||| |||| |||||
Sbjct 2499 TGACGCCTGCCCGGTGCTGGAAGATTAAATGATG 2532
>seq11968
Length=3642
Score = 102 bits (112), Expect = 8e-20
Identities = 80/96 (83%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116
|||||| | ||||||||||| ||||||||| |||||| || | |||| |||||
Sbjct 2974 ACCAGGGGGTGGCGACTGTTTACCTAAAACACAGGGCTCTGCGAAGTCTAAAGACGACGT 3033
Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||||||| ||||||||||||||||||||||||||||
Sbjct 3034 ATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAA 3069
>seq8424
Length=263062
Score = 102 bits (112), Expect = 8e-20
Identities = 80/96 (83%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116
|||||| | |||||||||||| |||| ||||| |||||| || || ||| |||||
Sbjct 260197 ACCAGGGGGTAGCGACTGTTTATCAAAACCACAGGGCTCTGCGAAGCCGCAAGGCGACGT 260138
Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||||||| ||||||||||||||||| ||||||||||
Sbjct 260137 ATAGGGTCTGACGCCTGCCCGGTGCTGGAAGGTTAA 260102
>seq7450
Length=405
Score = 102 bits (112), Expect = 8e-20
Identities = 80/96 (83%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116
|||||| | || |||||||| |||||||||| |||||| || || ||| |||||
Sbjct 262 ACCAGGGGGTGGCAACTGTTTAACAAAAACACAGGGCTCTGCGAAATCGTAAGATGACGT 321
Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||||||| ||||||||||||||||||||||||||||
Sbjct 322 ATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAA 357
>seq6860
Length=6169
Score = 102 bits (112), Expect = 8e-20
Identities = 80/96 (83%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116
|||||| | || |||||||| |||||||||| |||||| || || ||| |||||
Sbjct 5190 ACCAGGGGGTGGCAACTGTTTAGCAAAAACACAGGGCTCTGCGAAATCGCAAGATGACGT 5249
Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||||||| ||||||||||||||||||||||||||||
Sbjct 5250 ATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAA 5285
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476730442479
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |