Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq9910 178 1e-42 seq10654 152 5e-35 seq7320 152 5e-35 seq6993 152 5e-35 seq11968 102 8e-20 seq8424 102 8e-20 seq7450 102 8e-20 seq6860 102 8e-20 >seq9910 Length=308115 Score = 178 bits (196), Expect = 1e-42 Identities = 121/136 (89%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 23 GGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAA 82 ||||||||||| | |||| || | | | ||| |||||||| |||| |||||||||||| Sbjct 257391 GGACTTGCTCCTTGAGCTATTGGCAGCCACAGAAACCAGGCCCCTGCAACTGTTTATTAA 257332 Query 83 AAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCC 142 ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 257331 AAACATAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGATGCCTGCCCGGTGCT 257272 Query 143 GGAAGGTTAATTGATG 158 |||||||||||||||| Sbjct 257271 GGAAGGTTAATTGATG 257256 >seq10654 Length=1634 Score = 152 bits (168), Expect = 5e-35 Identities = 90/94 (96%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 65 GCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTG 124 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1174 GCTGCGACTGTTTAATAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTG 1233 Query 125 TGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158 ||||||||||||||||| ||||| |||| ||||| Sbjct 1234 TGACGCCTGCCCGGTGCTGGAAGATTAAATGATG 1267 >seq7320 Length=4144 Score = 152 bits (168), Expect = 5e-35 Identities = 90/94 (96%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 65 GCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTG 124 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3512 GCTGCGACTGTTTAATAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTG 3571 Query 125 TGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158 ||||||||||||||||| ||||| |||| ||||| Sbjct 3572 TGACGCCTGCCCGGTGCTGGAAGATTAAATGATG 3605 >seq6993 Length=5165 Score = 152 bits (168), Expect = 5e-35 Identities = 90/94 (96%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 65 GCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTG 124 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2439 GCTGCGACTGTTTAATAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTG 2498 Query 125 TGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158 ||||||||||||||||| ||||| |||| ||||| Sbjct 2499 TGACGCCTGCCCGGTGCTGGAAGATTAAATGATG 2532 >seq11968 Length=3642 Score = 102 bits (112), Expect = 8e-20 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | ||||||||||| ||||||||| |||||| || | |||| ||||| Sbjct 2974 ACCAGGGGGTGGCGACTGTTTACCTAAAACACAGGGCTCTGCGAAGTCTAAAGACGACGT 3033 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||| |||||||||||||||||||||||||||| Sbjct 3034 ATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAA 3069 >seq8424 Length=263062 Score = 102 bits (112), Expect = 8e-20 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | |||||||||||| |||| ||||| |||||| || || ||| ||||| Sbjct 260197 ACCAGGGGGTAGCGACTGTTTATCAAAACCACAGGGCTCTGCGAAGCCGCAAGGCGACGT 260138 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||| ||||||||||||||||| |||||||||| Sbjct 260137 ATAGGGTCTGACGCCTGCCCGGTGCTGGAAGGTTAA 260102 >seq7450 Length=405 Score = 102 bits (112), Expect = 8e-20 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | || |||||||| |||||||||| |||||| || || ||| ||||| Sbjct 262 ACCAGGGGGTGGCAACTGTTTAACAAAAACACAGGGCTCTGCGAAATCGTAAGATGACGT 321 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||| |||||||||||||||||||||||||||| Sbjct 322 ATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAA 357 >seq6860 Length=6169 Score = 102 bits (112), Expect = 8e-20 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | || |||||||| |||||||||| |||||| || || ||| ||||| Sbjct 5190 ACCAGGGGGTGGCAACTGTTTAGCAAAAACACAGGGCTCTGCGAAATCGCAAGATGACGT 5249 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||| |||||||||||||||||||||||||||| Sbjct 5250 ATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAA 5285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476730442479