Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq9910 545 6e-153
seq7320 450 3e-124
seq6993 428 1e-117
seq10654 421 2e-115
seq11968 329 8e-88
seq8424 324 3e-86
seq6860 315 2e-83
seq7450 158 3e-36
>seq9910
Length=308115
Score = 545 bits (604), Expect = 6e-153
Identities = 378/427 (89%), Gaps = 1/427 (0%)
Strand=Plus/Plus
Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60
||||| ||||| |||||||||| |||||||| ||||||||||| ||| | ||||||||||
Sbjct 257068 CGCGGGTACACCGCATCTTCACGGCGATTTCGATTTCACTGAGCCTCTGCTGGAGACAGC 257127
Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120
||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257128 GCCCCCATCATTATGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 257187
Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 257188 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATCAAGAGCTTCGCTTAC 257247
Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 257248 GCTAACCCCATCAATTAACCTTCCAGCACCGGGCAGGCATCACACCCTATACGTCCACTT 257307
Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300
|||||||||||||||||| ||||||||||||||||| |||| |||||||| ||| | |
Sbjct 257308 TCGTGTTTGCAGAGTGCTATGTTTTTAATAAACAGTTGCAGGGGCCTGGTTTCTGTGGCT 257367
Query 301 GGCATGAGCTTACGGAGCAAGTCCT-TCACCCTCACCGGCGCACCTTCTCCCGAAGTTAC 359
| || |||| | |||||||||||| ||||| ||| | ||| ||||||||||||||||||
Sbjct 257368 GCCAATAGCTCAAGGAGCAAGTCCTATCACCGTCAGCAGCGTACCTTCTCCCGAAGTTAC 257427
Query 360 GGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419
||| || ||||||||||||||||| | ||| ||||| |||||| ||||| | ||| ||
Sbjct 257428 GGTACCATTTTGCCTAGTTCCTTCAGCAGAGGTCTCTTAAGCGCTTTGGTCTACTCGGCC 257487
Query 420 CAACCAC 426
|||||
Sbjct 257488 TGACCAC 257494
>seq7320
Length=4144
Score = 450 bits (498), Expect = 3e-124
Identities = 355/419 (85%), Gaps = 15/419 (4%)
Strand=Plus/Minus
Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60
||||| | | |||||| ||||| ||||||| ||| ||||||||| || ||||||||
Sbjct 3784 CGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGAGTCTCTGGAGGAGACAGT 3725
Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3724 GTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 3665
Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180
||||||||||||| |||||||||||||||||| ||| |||| ||||||||||| ||
Sbjct 3664 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGCTT-GC---- 3610
Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240
||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 3609 ----ACCCCATCATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 3554
Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300
||||||||||||||||||||||||||| |||||||||||||| ||| | || | |||
Sbjct 3553 TCGTGTTTGCAGAGTGCTGTGTTTTTATTAAACAGTCGCAGCCACCTTTTCACTGCAACC 3494
Query 301 GGCATGA-GCTTACGGAGCAAGTC-CTTCACCCTCACC--GGCGCACCTTCTCCCGAAGT 356
||| | |||| ||| || || || || | | ||| ||||||||||||||||||||
Sbjct 3493 -TCATCATGCTTCGAGAGTAAATCTCTACA-CATTACCGAGGCGCACCTTCTCCCGAAGT 3436
Query 357 TACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415
|||||||| |||||| ||||||||| |||| ||||||||||||||||| | ||||||
Sbjct 3435 TACGGTGCTAATTTGCCGAGTTCCTTCTCCCGGGTTCTCTCAAGCGCCTTAGAATTCTC 3377
>seq6993
Length=5165
Score = 428 bits (474), Expect = 1e-117
Identities = 350/418 (84%), Gaps = 14/418 (3%)
Strand=Plus/Minus
Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60
||||| | | |||||| ||||| ||||||| ||| ||||||||| || ||||||||
Sbjct 2711 CGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGAGTCTCTGGAGGAGACAGT 2652
Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2651 GTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 2592
Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180
||||||||||||| |||||||||||||||||| ||| |||| ||||||||||| ||
Sbjct 2591 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGCTT-GC---- 2537
Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240
||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 2536 ----ACCCCATCATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 2481
Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCC-TGGTATCTTCGAC 299
||||||||||||||||||||||||||| |||||||||||||| || | ||| | | ||
Sbjct 2480 TCGTGTTTGCAGAGTGCTGTGTTTTTATTAAACAGTCGCAGCCACCATTTTAT-TGCAAC 2422
Query 300 CGGCATGAGCTTAC-GGAGCAAGTCCTTCACCCT-CACCGGCGCACCTTCTCCCGAAGTT 357
| | | | | | | || ||| | | ||| || || |||| ||||| ||||||||||
Sbjct 2421 C-CCTTCACCCTCCTGGCGCAGGCCAGTCAAACTACAAGGGCGTACCTTATCCCGAAGTT 2363
Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415
||||| || |||||| ||||||||| |||||||||||||||||||||| | || |||
Sbjct 2362 ACGGTACCAATTTGCCGAGTTCCTTCTCCCGAGTTCTCTCAAGCGCCTTAGAATACTC 2305
>seq10654
Length=1634
Score = 421 bits (466), Expect = 2e-115
Identities = 346/418 (83%), Gaps = 15/418 (4%)
Strand=Plus/Minus
Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60
||||| | | |||||| ||||| ||||||| ||| ||||||||| || ||||||||
Sbjct 1446 CGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGAGTCTCTGGAGGAGACAGT 1387
Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 GTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 1327
Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180
||||||||||||| |||||||||||||||||| ||| |||| ||||||||||| ||
Sbjct 1326 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGCTT-GC---- 1272
Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240
||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1271 ----ACCCCATCATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 1216
Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300
||||||||||||||||||||||||||| |||||||||||||| || | | | | |||
Sbjct 1215 TCGTGTTTGCAGAGTGCTGTGTTTTTATTAAACAGTCGCAGCCACCGATTTTTTGCAACC 1156
Query 301 GGCATGAGCTTAC--GGAGCAAGTCCTTCACCCTC-ACCGGCGCACCTTCTCCCGAAGTT 357
| || ||| | | |||| |||||| | |||| ||||||||||||||||
Sbjct 1155 GCTTTGGGCTCCCTTTGTACAAG---TTCACCTACTTGCGGCATACCTTCTCCCGAAGTT 1099
Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415
||||| | |||||| ||||||||| || ||||||||||||||||||| | || |||
Sbjct 1098 ACGGTATCAATTTGCCGAGTTCCTTCTCCAGAGTTCTCTCAAGCGCCTTAGAATACTC 1041
>seq11968
Length=3642
Score = 329 bits (364), Expect = 8e-88
Identities = 340/439 (77%), Gaps = 31/439 (7%)
Strand=Plus/Minus
Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60
||||| || | |||||||||| | || ||||||||| ||||| || | |||||||||
Sbjct 3254 CGCGGGAACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAGCCTATGCTGGAGACAGT 3195
Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3194 GGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 3135
Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180
||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||
Sbjct 3134 TTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATTCAGAGCTT-GC---- 3080
Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240
||||| | |||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 3079 ----ACCCCTCCTCTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTT 3024
Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300
| | || |||||| ||||||||| ||||||||||| | |||||| | | | ||
Sbjct 3023 TAGACTTCGCAGAGCCCTGTGTTTTAGGTAAACAGTCGCCACCCCCTGGTCTGTGC-CCC 2965
Query 301 GGCAT-GAGCTTACGGAGCA------AGTCCTTCACCCTCA---CCGGCG--------CA 342
||| |||| || |||| ||||| ||| | ||| | ||
Sbjct 2964 CACATACTGCTTGCGCAGCACATGGGCCTCCTTATCCCGAAGTTACGGAGGGAATTTTCA 2905
Query 343 C-CTTCTCCCGAAGTTACG-GTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAG 400
| ||| ||||||||||||| ||| | |||||| ||||||||| | ||||||||||||
Sbjct 2904 CGCTTATCCCGAAGTTACGCGTG-CAATTTGCCGAGTTCCTTCAGCATAGTTCTCTCAAG 2846
Query 401 CGCCTTGGTATTCTCTACC 419
||||||||||| |||||||
Sbjct 2845 CGCCTTGGTATACTCTACC 2827
>seq8424
Length=263062
Score = 324 bits (358), Expect = 3e-86
Identities = 323/416 (78%), Gaps = 26/416 (6%)
Strand=Plus/Plus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||| | || |||||||||||||||||| | ||||||||||| | |||||
Sbjct 259929 GCATCTTCACGGGGAATTCAATTTCACTGAGTCTATGCTGGAGACAGCGGGGAAGTCGTT 259988
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 259989 ACGCCATGCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGCCCGTTA 260048
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192
| |||||||||||||||||| ||||||||||| ||||||| || ||||| |
Sbjct 260049 TAGTTACGGCCGCCGTTTACTGGGGCTTCGATTCAGAGCTT-GC--------ACCCCTCC 260099
Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252
|||||||||| ||||||||||||||||| |||||||||||| ||| || || ||||
Sbjct 260100 TCTTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTGCGGCTTCGCAG 260159
Query 253 AGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCA-TGAGCTT 311
|| ||||| |||| |||||||||||| | |||||| | | | ||| || ||||
Sbjct 260160 AGCCCTGTGGTTTTGATAAACAGTCGCTACCCCCTGGTCTGTGCCACCCTCACCCTGCTT 260219
Query 312 ACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACG-GTGCCTTTTT 370
|| || || | |||| ||||| ||||||||||| ||| | |||
Sbjct 260220 GCGCAGGAA-------AGGGTCAC-------GCTTCTTCCGAAGTTACGCGTG-CAATTT 260264
Query 371 GCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426
||| ||||||||| | |||||||||||||||||||| || | || || |||||
Sbjct 260265 GCCGAGTTCCTTCAGCATAGTTCTCTCAAGCGCCTTGGCATACACTGCCTGACCAC 260320
>seq6860
Length=6169
Score = 315 bits (348), Expect = 2e-83
Identities = 318/415 (77%), Gaps = 38/415 (9%)
Strand=Plus/Minus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGT-GGAGACAGCGCCGCCATCGT 71
|||||||||| | || |||||||||||||||||| | | |||||||| | | ||||
Sbjct 5459 GCATCTTCACGGGGAATTCAATTTCACTGAGTCTATGTTTGGAGACAGTGGGGAAGTCGT 5400
Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5399 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 5340
Query 132 ATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCAT 191
|| ||| ||||||||||||||||||||||| || ||||||| || || ||
Sbjct 5339 ATAGTTCCGGCCGCCGTTTACCGGGGCTTCAATTCAGAGCTT-GC--------ACTCCTC 5289
Query 192 CAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCA 251
| |||||||||||||||||||||||||||| |||||||||||| ||| || || |||
Sbjct 5288 CTCTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCATCTTGCGATTTCGCA 5229
Query 252 GAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCT-------TCGACCGGCA 304
||| |||||||||| |||||||| || | |||||| | | |||| ||||
Sbjct 5228 GAGCCCTGTGTTTTTGCTAAACAGTTGCCACCCCCTGGTCTGTGCCCCTCTCGA-CGGCT 5170
Query 305 TGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGC 364
|| || || | ||| ||| |||| |||||||||||||| |
Sbjct 5169 TGCGC---CGACGAAAGGCCT-----------------CCTTATCCCGAAGTTACGGAGG 5130
Query 365 CTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419
||||| ||||||||| | ||||||||||||||||||||||| |||||||
Sbjct 5129 TAAATTGCCGAGTTCCTTCAACATAGTTCTCTCAAGCGCCTTGGTATACTCTACC 5075
>seq7450
Length=405
Score = 158 bits (174), Expect = 3e-36
Identities = 203/282 (72%), Gaps = 25/282 (9%)
Strand=Plus/Minus
Query 139 CGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAATTAA 198
||||||||||||||||||||||| || ||||||| || || | || ||||
Sbjct 404 CGGCCGCCGTTTACCGGGGCTTCAATTCAGAGCTT-------GCACTCCTCCTC--TTAA 354
Query 199 CCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCT 258
|||||||||||||||||||||||| |||||||||||| ||| || || |||||| ||
Sbjct 353 CCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCATCTTACGATTTCGCAGAGCCCT 294
Query 259 GTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACG-GAG 317
|||||||| |||||||| || | |||||| | | | || |||| || |||
Sbjct 293 GTGTTTTTGTTAAACAGTTGCCACCCCCTGGTCTGTGCCCCCACTGCCCGCTTGCGCGAG 234
Query 318 CAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGT 377
||| || | |||| |||||||||||||| | ||||| |||
Sbjct 233 CAA---------------TGGGCCTCCTTATCCCGAAGTTACGGGGGGAAATTGCCGAGT 189
Query 378 TCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419
|||||| | ||||||||||||||||||||||| |||||||
Sbjct 188 TCCTTCAACATAGTTCTCTCAAGCGCCTTGGTATACTCTACC 147
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260610136128
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