Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq9910 545 6e-153 seq7320 450 3e-124 seq6993 428 1e-117 seq10654 421 2e-115 seq11968 329 8e-88 seq8424 324 3e-86 seq6860 315 2e-83 seq7450 158 3e-36 >seq9910 Length=308115 Score = 545 bits (604), Expect = 6e-153 Identities = 378/427 (89%), Gaps = 1/427 (0%) Strand=Plus/Plus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| ||||| |||||||||| |||||||| ||||||||||| ||| | |||||||||| Sbjct 257068 CGCGGGTACACCGCATCTTCACGGCGATTTCGATTTCACTGAGCCTCTGCTGGAGACAGC 257127 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 ||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 257128 GCCCCCATCATTATGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 257187 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| | Sbjct 257188 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATCAAGAGCTTCGCTTAC 257247 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 257248 GCTAACCCCATCAATTAACCTTCCAGCACCGGGCAGGCATCACACCCTATACGTCCACTT 257307 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 |||||||||||||||||| ||||||||||||||||| |||| |||||||| ||| | | Sbjct 257308 TCGTGTTTGCAGAGTGCTATGTTTTTAATAAACAGTTGCAGGGGCCTGGTTTCTGTGGCT 257367 Query 301 GGCATGAGCTTACGGAGCAAGTCCT-TCACCCTCACCGGCGCACCTTCTCCCGAAGTTAC 359 | || |||| | |||||||||||| ||||| ||| | ||| |||||||||||||||||| Sbjct 257368 GCCAATAGCTCAAGGAGCAAGTCCTATCACCGTCAGCAGCGTACCTTCTCCCGAAGTTAC 257427 Query 360 GGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 ||| || ||||||||||||||||| | ||| ||||| |||||| ||||| | ||| || Sbjct 257428 GGTACCATTTTGCCTAGTTCCTTCAGCAGAGGTCTCTTAAGCGCTTTGGTCTACTCGGCC 257487 Query 420 CAACCAC 426 ||||| Sbjct 257488 TGACCAC 257494 >seq7320 Length=4144 Score = 450 bits (498), Expect = 3e-124 Identities = 355/419 (85%), Gaps = 15/419 (4%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| | | |||||| ||||| ||||||| ||| ||||||||| || |||||||| Sbjct 3784 CGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGAGTCTCTGGAGGAGACAGT 3725 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3724 GTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 3665 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||| ||| |||| ||||||||||| || Sbjct 3664 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGCTT-GC---- 3610 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 ||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 3609 ----ACCCCATCATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 3554 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 ||||||||||||||||||||||||||| |||||||||||||| ||| | || | ||| Sbjct 3553 TCGTGTTTGCAGAGTGCTGTGTTTTTATTAAACAGTCGCAGCCACCTTTTCACTGCAACC 3494 Query 301 GGCATGA-GCTTACGGAGCAAGTC-CTTCACCCTCACC--GGCGCACCTTCTCCCGAAGT 356 ||| | |||| ||| || || || || | | ||| |||||||||||||||||||| Sbjct 3493 -TCATCATGCTTCGAGAGTAAATCTCTACA-CATTACCGAGGCGCACCTTCTCCCGAAGT 3436 Query 357 TACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415 |||||||| |||||| ||||||||| |||| ||||||||||||||||| | |||||| Sbjct 3435 TACGGTGCTAATTTGCCGAGTTCCTTCTCCCGGGTTCTCTCAAGCGCCTTAGAATTCTC 3377 >seq6993 Length=5165 Score = 428 bits (474), Expect = 1e-117 Identities = 350/418 (84%), Gaps = 14/418 (3%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| | | |||||| ||||| ||||||| ||| ||||||||| || |||||||| Sbjct 2711 CGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGAGTCTCTGGAGGAGACAGT 2652 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2651 GTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 2592 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||| ||| |||| ||||||||||| || Sbjct 2591 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGCTT-GC---- 2537 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 ||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 2536 ----ACCCCATCATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 2481 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCC-TGGTATCTTCGAC 299 ||||||||||||||||||||||||||| |||||||||||||| || | ||| | | || Sbjct 2480 TCGTGTTTGCAGAGTGCTGTGTTTTTATTAAACAGTCGCAGCCACCATTTTAT-TGCAAC 2422 Query 300 CGGCATGAGCTTAC-GGAGCAAGTCCTTCACCCT-CACCGGCGCACCTTCTCCCGAAGTT 357 | | | | | | | || ||| | | ||| || || |||| ||||| |||||||||| Sbjct 2421 C-CCTTCACCCTCCTGGCGCAGGCCAGTCAAACTACAAGGGCGTACCTTATCCCGAAGTT 2363 Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415 ||||| || |||||| ||||||||| |||||||||||||||||||||| | || ||| Sbjct 2362 ACGGTACCAATTTGCCGAGTTCCTTCTCCCGAGTTCTCTCAAGCGCCTTAGAATACTC 2305 >seq10654 Length=1634 Score = 421 bits (466), Expect = 2e-115 Identities = 346/418 (83%), Gaps = 15/418 (4%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| | | |||||| ||||| ||||||| ||| ||||||||| || |||||||| Sbjct 1446 CGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGAGTCTCTGGAGGAGACAGT 1387 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1386 GTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 1327 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||| ||| |||| ||||||||||| || Sbjct 1326 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGCTT-GC---- 1272 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 ||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1271 ----ACCCCATCATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 1216 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 ||||||||||||||||||||||||||| |||||||||||||| || | | | | ||| Sbjct 1215 TCGTGTTTGCAGAGTGCTGTGTTTTTATTAAACAGTCGCAGCCACCGATTTTTTGCAACC 1156 Query 301 GGCATGAGCTTAC--GGAGCAAGTCCTTCACCCTC-ACCGGCGCACCTTCTCCCGAAGTT 357 | || ||| | | |||| |||||| | |||| |||||||||||||||| Sbjct 1155 GCTTTGGGCTCCCTTTGTACAAG---TTCACCTACTTGCGGCATACCTTCTCCCGAAGTT 1099 Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415 ||||| | |||||| ||||||||| || ||||||||||||||||||| | || ||| Sbjct 1098 ACGGTATCAATTTGCCGAGTTCCTTCTCCAGAGTTCTCTCAAGCGCCTTAGAATACTC 1041 >seq11968 Length=3642 Score = 329 bits (364), Expect = 8e-88 Identities = 340/439 (77%), Gaps = 31/439 (7%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| || | |||||||||| | || ||||||||| ||||| || | ||||||||| Sbjct 3254 CGCGGGAACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAGCCTATGCTGGAGACAGT 3195 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3194 GGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 3135 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||||||||||||||| ||||||| || Sbjct 3134 TTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATTCAGAGCTT-GC---- 3080 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 ||||| | |||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 3079 ----ACCCCTCCTCTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTT 3024 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 | | || |||||| ||||||||| ||||||||||| | |||||| | | | || Sbjct 3023 TAGACTTCGCAGAGCCCTGTGTTTTAGGTAAACAGTCGCCACCCCCTGGTCTGTGC-CCC 2965 Query 301 GGCAT-GAGCTTACGGAGCA------AGTCCTTCACCCTCA---CCGGCG--------CA 342 ||| |||| || |||| ||||| ||| | ||| | || Sbjct 2964 CACATACTGCTTGCGCAGCACATGGGCCTCCTTATCCCGAAGTTACGGAGGGAATTTTCA 2905 Query 343 C-CTTCTCCCGAAGTTACG-GTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAG 400 | ||| ||||||||||||| ||| | |||||| ||||||||| | |||||||||||| Sbjct 2904 CGCTTATCCCGAAGTTACGCGTG-CAATTTGCCGAGTTCCTTCAGCATAGTTCTCTCAAG 2846 Query 401 CGCCTTGGTATTCTCTACC 419 ||||||||||| ||||||| Sbjct 2845 CGCCTTGGTATACTCTACC 2827 >seq8424 Length=263062 Score = 324 bits (358), Expect = 3e-86 Identities = 323/416 (78%), Gaps = 26/416 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | || |||||||||||||||||| | ||||||||||| | ||||| Sbjct 259929 GCATCTTCACGGGGAATTCAATTTCACTGAGTCTATGCTGGAGACAGCGGGGAAGTCGTT 259988 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 259989 ACGCCATGCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGCCCGTTA 260048 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192 | |||||||||||||||||| ||||||||||| ||||||| || ||||| | Sbjct 260049 TAGTTACGGCCGCCGTTTACTGGGGCTTCGATTCAGAGCTT-GC--------ACCCCTCC 260099 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252 |||||||||| ||||||||||||||||| |||||||||||| ||| || || |||| Sbjct 260100 TCTTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTGCGGCTTCGCAG 260159 Query 253 AGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCA-TGAGCTT 311 || ||||| |||| |||||||||||| | |||||| | | | ||| || |||| Sbjct 260160 AGCCCTGTGGTTTTGATAAACAGTCGCTACCCCCTGGTCTGTGCCACCCTCACCCTGCTT 260219 Query 312 ACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACG-GTGCCTTTTT 370 || || || | |||| ||||| ||||||||||| ||| | ||| Sbjct 260220 GCGCAGGAA-------AGGGTCAC-------GCTTCTTCCGAAGTTACGCGTG-CAATTT 260264 Query 371 GCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||| ||||||||| | |||||||||||||||||||| || | || || ||||| Sbjct 260265 GCCGAGTTCCTTCAGCATAGTTCTCTCAAGCGCCTTGGCATACACTGCCTGACCAC 260320 >seq6860 Length=6169 Score = 315 bits (348), Expect = 2e-83 Identities = 318/415 (77%), Gaps = 38/415 (9%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGT-GGAGACAGCGCCGCCATCGT 71 |||||||||| | || |||||||||||||||||| | | |||||||| | | |||| Sbjct 5459 GCATCTTCACGGGGAATTCAATTTCACTGAGTCTATGTTTGGAGACAGTGGGGAAGTCGT 5400 Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5399 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 5340 Query 132 ATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCAT 191 || ||| ||||||||||||||||||||||| || ||||||| || || || Sbjct 5339 ATAGTTCCGGCCGCCGTTTACCGGGGCTTCAATTCAGAGCTT-GC--------ACTCCTC 5289 Query 192 CAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCA 251 | |||||||||||||||||||||||||||| |||||||||||| ||| || || ||| Sbjct 5288 CTCTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCATCTTGCGATTTCGCA 5229 Query 252 GAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCT-------TCGACCGGCA 304 ||| |||||||||| |||||||| || | |||||| | | |||| |||| Sbjct 5228 GAGCCCTGTGTTTTTGCTAAACAGTTGCCACCCCCTGGTCTGTGCCCCTCTCGA-CGGCT 5170 Query 305 TGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGC 364 || || || | ||| ||| |||| |||||||||||||| | Sbjct 5169 TGCGC---CGACGAAAGGCCT-----------------CCTTATCCCGAAGTTACGGAGG 5130 Query 365 CTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 ||||| ||||||||| | ||||||||||||||||||||||| ||||||| Sbjct 5129 TAAATTGCCGAGTTCCTTCAACATAGTTCTCTCAAGCGCCTTGGTATACTCTACC 5075 >seq7450 Length=405 Score = 158 bits (174), Expect = 3e-36 Identities = 203/282 (72%), Gaps = 25/282 (9%) Strand=Plus/Minus Query 139 CGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAATTAA 198 ||||||||||||||||||||||| || ||||||| || || | || |||| Sbjct 404 CGGCCGCCGTTTACCGGGGCTTCAATTCAGAGCTT-------GCACTCCTCCTC--TTAA 354 Query 199 CCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCT 258 |||||||||||||||||||||||| |||||||||||| ||| || || |||||| || Sbjct 353 CCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCATCTTACGATTTCGCAGAGCCCT 294 Query 259 GTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACG-GAG 317 |||||||| |||||||| || | |||||| | | | || |||| || ||| Sbjct 293 GTGTTTTTGTTAAACAGTTGCCACCCCCTGGTCTGTGCCCCCACTGCCCGCTTGCGCGAG 234 Query 318 CAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGT 377 ||| || | |||| |||||||||||||| | ||||| ||| Sbjct 233 CAA---------------TGGGCCTCCTTATCCCGAAGTTACGGGGGGAAATTGCCGAGT 189 Query 378 TCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 |||||| | ||||||||||||||||||||||| ||||||| Sbjct 188 TCCTTCAACATAGTTCTCTCAAGCGCCTTGGTATACTCTACC 147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260610136128