Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01000753.1
Length=364
Score E
Sequences producing significant alignments: (Bits) Value
seq6860 302 1e-79
seq8424 298 1e-78
seq11968 288 2e-75
seq9910 259 1e-66
seq10654 221 3e-55
seq7320 219 9e-55
seq6993 219 9e-55
seq7450 127 4e-27
>seq6860
Length=6169
Score = 302 bits (334), Expect = 1e-79
Identities = 295/376 (78%), Gaps = 23/376 (6%)
Strand=Plus/Minus
Query 2 ACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTG-AGACAGTGCCCAA 60
|||| |||||||||| |||| | ||||||||| |||||||| ||| |||||||| ||
Sbjct 5464 ACCCCGCATCTTCACGGGGAATTCAATTTCACTGAGTCTATGTTTGGAGACAGTGGGGAA 5405
Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 5404 GTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 5345
Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180
||||||||||| |||||||||||||| ||||||| | |||| || |||| ||
Sbjct 5344 CCGTTATAGTTCCGGCCGCCGTTTACCGGGGCTTCAATTCAGAGC-----TTGC----AC 5294
Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240
||| ||||||||||| |||||||||||||||||| ||||||| || |||||||| |
Sbjct 5293 TCCTCCTCTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCATCTTGCGATT 5234
Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGT------CGCTTGGGC----CTATTCTCTGC 290
| ||||| |||||||||||| |||||||| | | ||| | | |||| |
Sbjct 5233 TCGCAGAGCCCTGTGTTTTTGCTAAACAGTTGCCACCCCCTGGTCTGTGCCCCTCTCGAC 5174
Query 291 GGCCT--GTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348
||| | | | || |||| | |||| |||| ||||||||| | | |||||||||||
Sbjct 5173 GGCTTGCGCCGACGAAAGGC-CTCCTTATCCCGAAGTTACGGAGGTAAATTGCCGAGTTC 5115
Query 349 CTTAACAATAGTTCTC 364
||| | |||||||||
Sbjct 5114 CTTCAACATAGTTCTC 5099
>seq8424
Length=263062
Score = 298 bits (330), Expect = 1e-78
Identities = 291/375 (78%), Gaps = 21/375 (6%)
Strand=Plus/Plus
Query 2 ACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAA 61
|||| |||||||||| |||| | ||||||||| |||||||| | ||||||| | ||
Sbjct 259924 ACCCCGCATCTTCACGGGGAATTCAATTTCACTGAGTCTATGCTGGAGACAGCGGGGAAG 259983
Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121
|||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 259984 TCGTTACGCCATGCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGCC 260043
Query 122 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACA 181
||||||||||||||||||||||||||||||||| |||| || |||| ||
Sbjct 260044 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATTCAGAGC-----TTGC----ACC 260094
Query 182 GATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTT 241
||| |||||||||||||||||||||||||||||| ||||||| ||| |||||| |||
Sbjct 260095 CCTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTGCGGCTT 260154
Query 242 AGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTG-----------C 290
||||| |||||| ||||| |||||||||||| ||| ||| || |
Sbjct 260155 CGCAGAGCCCTGTGGTTTTGATAAACAGTCGCTACCCCCTGGTCTGTGCCACCCTCACCC 260214
Query 291 GGCCTGTCATAGACAGGCAC-CCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCC 349
|| || || ||| | | ||||| || |||||||| | || |||||||||||||
Sbjct 260215 TGCTTGCGCAGGAAAGGGTCACGCTTCTTCCGAAGTTACGCGTGCAATTTGCCGAGTTCC 260274
Query 350 TTAACAATAGTTCTC 364
|| | |||||||||
Sbjct 260275 TTCAGCATAGTTCTC 260289
>seq11968
Length=3642
Score = 288 bits (318), Expect = 2e-75
Identities = 227/272 (83%), Gaps = 9/272 (3%)
Strand=Plus/Minus
Query 2 ACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAA 61
|||| |||||||||| |||| | ||||||| | ||| |||| | ||||||||| ||
Sbjct 3247 ACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAGCCTATGCTGGAGACAGTGGGGAAG 3188
Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3187 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 3128
Query 122 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACA 181
||||||||||||||||||||||||| ||||||| |||| || |||| ||
Sbjct 3127 CGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATTCAGAGC-----TTGC----ACC 3077
Query 182 GATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTT 241
||| ||||||||||| |||||||||||||||||| ||||||| ||||||| |||||
Sbjct 3076 CCTCCTCTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTTAGACTT 3017
Query 242 AGCAGAAACCTGTGTTTTTGGTAAACAGTCGC 273
||||| |||||||||| |||||||||||||
Sbjct 3016 CGCAGAGCCCTGTGTTTTAGGTAAACAGTCGC 2985
>seq9910
Length=308115
Score = 259 bits (286), Expect = 1e-66
Identities = 233/293 (80%), Gaps = 0/293 (0%)
Strand=Plus/Plus
Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60
||| | |||||||||| | |||| | ||||||| ||| || | | ||||||| ||||
Sbjct 257074 TACACCGCATCTTCACGGCGATTTCGATTTCACTGAGCCTCTGCTGGAGACAGCGCCCCC 257133
Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120
||| ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 257134 ATCATTATGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 257193
Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180
|||||||||||||||||||||||||||||||||| | | |||||| || | |||||
Sbjct 257194 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATCAAGAGCTTCGCTTACGCTAAC 257253
Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240
| |||||||||||||||||||||||| ||| ||||||| || ||| || |
Sbjct 257254 CCCATCAATTAACCTTCCAGCACCGGGCAGGCATCACACCCTATACGTCCACTTTCGTGT 257313
Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGC 293
| ||||| || ||||||| |||||||| || |||||| | |||| |||
Sbjct 257314 TTGCAGAGTGCTATGTTTTTAATAAACAGTTGCAGGGGCCTGGTTTCTGTGGC 257366
>seq10654
Length=1634
Score = 221 bits (244), Expect = 3e-55
Identities = 278/383 (73%), Gaps = 34/383 (9%)
Strand=Plus/Minus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
||||| |||| ||| ||| ||| | |||||| | | ||||||||| ||||||
Sbjct 1434 GCATCATCACAAACATTTCAACTTCGCTGAGTCTCTGGAGGAGACAGTGTGGCCATCGTT 1375
Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1315
Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186
|||||||||||||||||||||||| ||| | | | || |||| | | || |
Sbjct 1314 TAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGC-----TTGC---ACCCCAT-C 1264
Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246
|||| ||||||||||||||||||||||| ||||||| || ||| || || ||||
Sbjct 1263 ATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 1204
Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGC---------GGCCTGT 297
| |||||||||| ||||||||||| || ||| | ||| || ||
Sbjct 1203 AGTGCTGTGTTTTTATTAAACAGTCGCAGCCACCGATTTTTTGCAACCGCTTTGGGCTCC 1144
Query 298 CATAG-ACA---------------GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGC 341
| | | ||| |||| ||||||||| ||||||||| ||| |||||
Sbjct 1143 CTTTGTACAAGTTCACCTACTTGCGGCATACCTTCTCCCGAAGTTACGGTATCAATTTGC 1084
Query 342 CGAGTTCCTTAACAATAGTTCTC 364
|||||||||| | | |||||||
Sbjct 1083 CGAGTTCCTTCTCCAGAGTTCTC 1061
>seq7320
Length=4144
Score = 219 bits (242), Expect = 9e-55
Identities = 210/267 (79%), Gaps = 9/267 (3%)
Strand=Plus/Minus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
||||| |||| ||| ||| ||| | |||||| | | ||||||||| ||||||
Sbjct 3772 GCATCATCACAAACATTTCAACTTCGCTGAGTCTCTGGAGGAGACAGTGTGGCCATCGTT 3713
Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3712 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 3653
Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186
|||||||||||||||||||||||| ||| | | | || |||| | | || |
Sbjct 3652 TAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGC-----TTGC---ACCCCAT-C 3602
Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246
|||| ||||||||||||||||||||||| ||||||| || ||| || || ||||
Sbjct 3601 ATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 3542
Query 247 AAACCTGTGTTTTTGGTAAACAGTCGC 273
| |||||||||| |||||||||||
Sbjct 3541 AGTGCTGTGTTTTTATTAAACAGTCGC 3515
>seq6993
Length=5165
Score = 219 bits (242), Expect = 9e-55
Identities = 210/267 (79%), Gaps = 9/267 (3%)
Strand=Plus/Minus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
||||| |||| ||| ||| ||| | |||||| | | ||||||||| ||||||
Sbjct 2699 GCATCATCACAAACATTTCAACTTCGCTGAGTCTCTGGAGGAGACAGTGTGGCCATCGTT 2640
Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2639 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 2580
Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186
|||||||||||||||||||||||| ||| | | | || |||| | | || |
Sbjct 2579 TAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGC-----TTGC---ACCCCAT-C 2529
Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246
|||| ||||||||||||||||||||||| ||||||| || ||| || || ||||
Sbjct 2528 ATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 2469
Query 247 AAACCTGTGTTTTTGGTAAACAGTCGC 273
| |||||||||| |||||||||||
Sbjct 2468 AGTGCTGTGTTTTTATTAAACAGTCGC 2442
>seq7450
Length=405
Score = 127 bits (140), Expect = 4e-27
Identities = 174/243 (72%), Gaps = 20/243 (8%)
Strand=Plus/Minus
Query 133 CGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCCTTAA 192
|||||||||||||| ||||||| | |||| |||| | | ||| | |||||
Sbjct 404 CGGCCGCCGTTTACCGGGGCTTCAATTCAGAGCTTGCACTCCTC---------CTCTTAA 354
Query 193 CCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCT 252
|||||| |||||||||||||||||| ||||||| || |||| ||| || ||||| |||
Sbjct 353 CCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCATCTTACGATTTCGCAGAGCCCT 294
Query 253 GTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGC--CTGTC--ATAG------ 302
||||||||| |||||||| || ||| ||| ||| | ||| | | |
Sbjct 293 GTGTTTTTGTTAAACAGTTGCCACCCCCTGGTCTGTGCCCCCACTGCCCGCTTGCGCGAG 234
Query 303 -ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTT 361
| || | |||| |||| ||||||||||| | |||||||||||||| | ||||||
Sbjct 233 CAATGGGCCTCCTTATCCCGAAGTTACGGGGGGAAATTGCCGAGTTCCTTCAACATAGTT 174
Query 362 CTC 364
|||
Sbjct 173 CTC 171
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1062240013184
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