Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq6860 302 1e-79 seq8424 298 1e-78 seq11968 288 2e-75 seq9910 259 1e-66 seq10654 221 3e-55 seq7320 219 9e-55 seq6993 219 9e-55 seq7450 127 4e-27 >seq6860 Length=6169 Score = 302 bits (334), Expect = 1e-79 Identities = 295/376 (78%), Gaps = 23/376 (6%) Strand=Plus/Minus Query 2 ACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTG-AGACAGTGCCCAA 60 |||| |||||||||| |||| | ||||||||| |||||||| ||| |||||||| || Sbjct 5464 ACCCCGCATCTTCACGGGGAATTCAATTTCACTGAGTCTATGTTTGGAGACAGTGGGGAA 5405 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 5404 GTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 5345 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 ||||||||||| |||||||||||||| ||||||| | |||| || |||| || Sbjct 5344 CCGTTATAGTTCCGGCCGCCGTTTACCGGGGCTTCAATTCAGAGC-----TTGC----AC 5294 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 ||| ||||||||||| |||||||||||||||||| ||||||| || |||||||| | Sbjct 5293 TCCTCCTCTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCATCTTGCGATT 5234 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGT------CGCTTGGGC----CTATTCTCTGC 290 | ||||| |||||||||||| |||||||| | | ||| | | |||| | Sbjct 5233 TCGCAGAGCCCTGTGTTTTTGCTAAACAGTTGCCACCCCCTGGTCTGTGCCCCTCTCGAC 5174 Query 291 GGCCT--GTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 ||| | | | || |||| | |||| |||| ||||||||| | | ||||||||||| Sbjct 5173 GGCTTGCGCCGACGAAAGGC-CTCCTTATCCCGAAGTTACGGAGGTAAATTGCCGAGTTC 5115 Query 349 CTTAACAATAGTTCTC 364 ||| | ||||||||| Sbjct 5114 CTTCAACATAGTTCTC 5099 >seq8424 Length=263062 Score = 298 bits (330), Expect = 1e-78 Identities = 291/375 (78%), Gaps = 21/375 (6%) Strand=Plus/Plus Query 2 ACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAA 61 |||| |||||||||| |||| | ||||||||| |||||||| | ||||||| | || Sbjct 259924 ACCCCGCATCTTCACGGGGAATTCAATTTCACTGAGTCTATGCTGGAGACAGCGGGGAAG 259983 Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 |||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct 259984 TCGTTACGCCATGCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGCC 260043 Query 122 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACA 181 ||||||||||||||||||||||||||||||||| |||| || |||| || Sbjct 260044 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATTCAGAGC-----TTGC----ACC 260094 Query 182 GATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTT 241 ||| |||||||||||||||||||||||||||||| ||||||| ||| |||||| ||| Sbjct 260095 CCTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTGCGGCTT 260154 Query 242 AGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTG-----------C 290 ||||| |||||| ||||| |||||||||||| ||| ||| || | Sbjct 260155 CGCAGAGCCCTGTGGTTTTGATAAACAGTCGCTACCCCCTGGTCTGTGCCACCCTCACCC 260214 Query 291 GGCCTGTCATAGACAGGCAC-CCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCC 349 || || || ||| | | ||||| || |||||||| | || ||||||||||||| Sbjct 260215 TGCTTGCGCAGGAAAGGGTCACGCTTCTTCCGAAGTTACGCGTGCAATTTGCCGAGTTCC 260274 Query 350 TTAACAATAGTTCTC 364 || | ||||||||| Sbjct 260275 TTCAGCATAGTTCTC 260289 >seq11968 Length=3642 Score = 288 bits (318), Expect = 2e-75 Identities = 227/272 (83%), Gaps = 9/272 (3%) Strand=Plus/Minus Query 2 ACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAA 61 |||| |||||||||| |||| | ||||||| | ||| |||| | ||||||||| || Sbjct 3247 ACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAGCCTATGCTGGAGACAGTGGGGAAG 3188 Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 3187 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 3128 Query 122 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACA 181 ||||||||||||||||||||||||| ||||||| |||| || |||| || Sbjct 3127 CGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATTCAGAGC-----TTGC----ACC 3077 Query 182 GATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTT 241 ||| ||||||||||| |||||||||||||||||| ||||||| ||||||| ||||| Sbjct 3076 CCTCCTCTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTTAGACTT 3017 Query 242 AGCAGAAACCTGTGTTTTTGGTAAACAGTCGC 273 ||||| |||||||||| ||||||||||||| Sbjct 3016 CGCAGAGCCCTGTGTTTTAGGTAAACAGTCGC 2985 >seq9910 Length=308115 Score = 259 bits (286), Expect = 1e-66 Identities = 233/293 (80%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | |||| | ||||||| ||| || | | ||||||| |||| Sbjct 257074 TACACCGCATCTTCACGGCGATTTCGATTTCACTGAGCCTCTGCTGGAGACAGCGCCCCC 257133 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||| ||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 257134 ATCATTATGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 257193 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||||||||||||||||||||||||||||||||| | | |||||| || | ||||| Sbjct 257194 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATCAAGAGCTTCGCTTACGCTAAC 257253 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | |||||||||||||||||||||||| ||| ||||||| || ||| || | Sbjct 257254 CCCATCAATTAACCTTCCAGCACCGGGCAGGCATCACACCCTATACGTCCACTTTCGTGT 257313 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGC 293 | ||||| || ||||||| |||||||| || |||||| | |||| ||| Sbjct 257314 TTGCAGAGTGCTATGTTTTTAATAAACAGTTGCAGGGGCCTGGTTTCTGTGGC 257366 >seq10654 Length=1634 Score = 221 bits (244), Expect = 3e-55 Identities = 278/383 (73%), Gaps = 34/383 (9%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||| |||| ||| ||| ||| | |||||| | | ||||||||| |||||| Sbjct 1434 GCATCATCACAAACATTTCAACTTCGCTGAGTCTCTGGAGGAGACAGTGTGGCCATCGTT 1375 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1374 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1315 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 |||||||||||||||||||||||| ||| | | | || |||| | | || | Sbjct 1314 TAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGC-----TTGC---ACCCCAT-C 1264 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||||||||||||||||||| ||||||| || ||| || || |||| Sbjct 1263 ATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 1204 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGC---------GGCCTGT 297 | |||||||||| ||||||||||| || ||| | ||| || || Sbjct 1203 AGTGCTGTGTTTTTATTAAACAGTCGCAGCCACCGATTTTTTGCAACCGCTTTGGGCTCC 1144 Query 298 CATAG-ACA---------------GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGC 341 | | | ||| |||| ||||||||| ||||||||| ||| ||||| Sbjct 1143 CTTTGTACAAGTTCACCTACTTGCGGCATACCTTCTCCCGAAGTTACGGTATCAATTTGC 1084 Query 342 CGAGTTCCTTAACAATAGTTCTC 364 |||||||||| | | ||||||| Sbjct 1083 CGAGTTCCTTCTCCAGAGTTCTC 1061 >seq7320 Length=4144 Score = 219 bits (242), Expect = 9e-55 Identities = 210/267 (79%), Gaps = 9/267 (3%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||| |||| ||| ||| ||| | |||||| | | ||||||||| |||||| Sbjct 3772 GCATCATCACAAACATTTCAACTTCGCTGAGTCTCTGGAGGAGACAGTGTGGCCATCGTT 3713 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3712 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 3653 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 |||||||||||||||||||||||| ||| | | | || |||| | | || | Sbjct 3652 TAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGC-----TTGC---ACCCCAT-C 3602 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||||||||||||||||||| ||||||| || ||| || || |||| Sbjct 3601 ATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 3542 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGC 273 | |||||||||| ||||||||||| Sbjct 3541 AGTGCTGTGTTTTTATTAAACAGTCGC 3515 >seq6993 Length=5165 Score = 219 bits (242), Expect = 9e-55 Identities = 210/267 (79%), Gaps = 9/267 (3%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||| |||| ||| ||| ||| | |||||| | | ||||||||| |||||| Sbjct 2699 GCATCATCACAAACATTTCAACTTCGCTGAGTCTCTGGAGGAGACAGTGTGGCCATCGTT 2640 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2639 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 2580 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 |||||||||||||||||||||||| ||| | | | || |||| | | || | Sbjct 2579 TAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGC-----TTGC---ACCCCAT-C 2529 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||||||||||||||||||| ||||||| || ||| || || |||| Sbjct 2528 ATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 2469 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGC 273 | |||||||||| ||||||||||| Sbjct 2468 AGTGCTGTGTTTTTATTAAACAGTCGC 2442 >seq7450 Length=405 Score = 127 bits (140), Expect = 4e-27 Identities = 174/243 (72%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 133 CGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCCTTAA 192 |||||||||||||| ||||||| | |||| |||| | | ||| | ||||| Sbjct 404 CGGCCGCCGTTTACCGGGGCTTCAATTCAGAGCTTGCACTCCTC---------CTCTTAA 354 Query 193 CCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCT 252 |||||| |||||||||||||||||| ||||||| || |||| ||| || ||||| ||| Sbjct 353 CCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCATCTTACGATTTCGCAGAGCCCT 294 Query 253 GTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGC--CTGTC--ATAG------ 302 ||||||||| |||||||| || ||| ||| ||| | ||| | | | Sbjct 293 GTGTTTTTGTTAAACAGTTGCCACCCCCTGGTCTGTGCCCCCACTGCCCGCTTGCGCGAG 234 Query 303 -ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTT 361 | || | |||| |||| ||||||||||| | |||||||||||||| | |||||| Sbjct 233 CAATGGGCCTCCTTATCCCGAAGTTACGGGGGGAAATTGCCGAGTTCCTTCAACATAGTT 174 Query 362 CTC 364 ||| Sbjct 173 CTC 171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062240013184