Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq6860 443 6e-122 seq7320 439 7e-121 seq9910 428 1e-117 seq13862 176 1e-41 seq11968 163 9e-38 >seq6860 Length=6169 Score = 443 bits (490), Expect = 6e-122 Identities = 402/501 (80%), Gaps = 18/501 (4%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||||||||||| ||||| | |||||||||||| Sbjct 1801 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGGCCCGCTCTAGCGGTGGAGCAG 1860 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCC-- 118 |||||||||||||| |||||||| |||||||||||| |||||||||| | | | | Sbjct 1861 GTGGTTTAATTCGACGCAACGCGCAGAACCTTACCAGCCCTTGACATCC-CGGTCGCGGT 1919 Query 119 -TCTAGAGATAGAGGTTTCCCCTTCGGG-GGACAGAGTGACAGGTGATGCATGGTTGTCG 176 || |||||| || | | ||||| |||| | | |||||||| ||||||| ||||| Sbjct 1920 TTCCAGAGATGGATTCCTTCAGTTCGGCTGGACCG-GAGACAGGTGCTGCATGGCTGTCG 1978 Query 177 TCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAG 236 ||||||||||||||| | |||||||||||||||||||||||||||||||| |||| Sbjct 1979 TCAGCTCGTGTCGTGGGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCCGTCTTTAG 2038 Query 237 TTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCG-GAGGAAGGTG 295 |||| | |||| ||||| ||||||||| |||||||||||| || ||| |||||||||| Sbjct 2039 TTGCTACCATTTAGTTGAGCACTCTAAAGAGACTGCCGGTGATAAGCCGCGAGGAAGGTG 2098 Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355 |||| |||||||| || ||||| |||||| | ||||||||||||||||||||||| Sbjct 2099 GGGATGACGTCAAGTCCTCATGGCCCTTACAAGGTGGGCTACACACGTGCTACAATG--- 2155 Query 356 AATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCG 415 |||| || || ||| || ||||||| || |||| | |||||||||| Sbjct 2156 -------AGGGACGCAAAGGCGCAAGCCTTCGCAAATCTCAAAAAGCCG-TCTCAGTTCG 2207 Query 416 GATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCAT 475 ||||| |||||||||||| |||||| |||||||||||||||||| |||||||||| Sbjct 2208 GATTGGGCTCTGCAACTCGAGCCCATGAAGTTGGAATCGCTAGTAATCGCAGATCAGCAT 2267 Query 476 GCTACGGTGAATACGTTCCCG 496 ||| ||||||||||||||||| Sbjct 2268 GCTGCGGTGAATACGTTCCCG 2288 >seq7320 Length=4144 Score = 439 bits (486), Expect = 7e-121 Identities = 409/518 (79%), Gaps = 26/518 (5%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||||||||||| || |||||||||||||||||| Sbjct 397 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 456 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAA------------------CCTTACCAAATCTT 102 ||||||||||||||||||||||| |||| ||||||| ||| Sbjct 457 GTGGTTTAATTCGAAGCAACGCGCAGAATTCGATGCAAGCGAAAAACCTTACCTGGCCTT 516 Query 103 GACAT-CCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTG---ACA 158 ||||| || || || | |||||| | || ||| || | |||| ||| Sbjct 517 GACATGCCACTAACGAAGC-AGAGATGCA--TTAGGTGCTCGAAAGAGAAAGTGGACACA 573 Query 159 GGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAG 218 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 574 GGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAG 633 Query 219 CGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGA 278 |||||||||| || ||||||||||| ||||||||||| || |||||||||||| Sbjct 634 CGCAACCCTTGCCAATAATTGCCATCATTTAGTTGGGCACTTTATTGGGACTGCCGGTGA 693 Query 279 CAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACA 338 ||||||||||||||||||||| |||||||| || ||||| |||||| | |||||||||| Sbjct 694 CAAACCGGAGGAAGGTGGGGATGACGTCAAGTCCTCATGGCCCTTACGCGTTGGGCTACA 753 Query 339 CACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATA 398 ||||||||||||||| | |||| ||||||| | |||||| ||| |||| | | Sbjct 754 CACGTGCTACAATGGCGACTACAGTGGGCAGCCACCTCGCGAGAGGGAGCTAATCTCCAA 813 Query 399 AAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAG 458 |||| | ||||||||||||| || |||||||||||| ||||| ||||||||||| Sbjct 814 AAGTCG-TCTCAGTTCGGATCGTTCTCTGCAACTCGAGAGCGTGAAGGCGGAATCGCTAG 872 Query 459 TAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCG 496 |||||| ||||||||||| ||||||||||||||||| Sbjct 873 TAATCGCGGATCAGCATGCCGCGGTGAATACGTTCCCG 910 >seq9910 Length=308115 Score = 428 bits (474), Expect = 1e-117 Identities = 400/509 (79%), Gaps = 16/509 (3%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||||||||||||||||||||||||||||| || Sbjct 260459 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGATGAT 260400 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||||||||| ||||||||| | ||||||| || || Sbjct 260399 GTGGTTTAATTCGATGCAACGCGAAAAACCTTACCCACCTTTGACATGGCAGGAAGTTTC 260340 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTG---ACAGGTGATGCATGGTTGTCGT 177 |||||| || ||| ||| || | || ||||||| ||||||| |||||| Sbjct 260339 CAGAGATGGA---TTCGTGCTCGAAAGAGAACCTGCACACAGGTGCTGCATGGCTGTCGT 260283 Query 178 CAGCTCGTGTCGTGAGATGTTGGGTTAAGT----------CCCGCAACGAGCGCAACCCT 227 ||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 260282 CAGCTCGTGTCGTGAGATGTTGGGTTATGTTGGGTTAACTCCCGCAACGAGCGCAACCCT 260223 Query 228 TAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGA 287 | || ||||||||||| ||||||||||| || ||||||||||||||||||||| Sbjct 260222 TGCCAATAATTGCCATCATTTAGTTGGGCACTTTATTGGGACTGCCGGTGACAAACCGGA 260163 Query 288 GGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTA 347 |||||||||||| |||||||| || ||||| |||||||| ||||| ||||||| || Sbjct 260162 GGAAGGTGGGGATGACGTCAAGTCCTCATGGCCCTTATGGCCAGGGCTTCACACGTAATA 260103 Query 348 CAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTC 407 |||||| | |||| || | || || |||||||| ||| |||| || |||| | || Sbjct 260102 CAATGGTCGGTACAGAGAGTTGCCAACCCGCGAGGGGGAGCCAATCTCAGAAAGCCGATC 260043 Query 408 TCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAG 467 ||| ||||||| || |||||||||| || |||||| ||||||||||||||||| | Sbjct 260042 GTAGTCCGGATTGCAGGCTGCAACTCGCCTGCATGAAGTCGGAATCGCTAGTAATCGCGG 259983 Query 468 ATCAGCATGCTACGGTGAATACGTTCCCG 496 ||||||||| ||||||||||||||||| Sbjct 259982 ATCAGCATGTCGCGGTGAATACGTTCCCG 259954 >seq13862 Length=422 Score = 176 bits (194), Expect = 1e-41 Identities = 145/177 (82%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 320 CCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCG 379 ||||||| | ||||| ||||||| |||||||| ||||| |||| || || ||||| Sbjct 1 CCTTATGGGTAGGGCTTCACACGTCATACAATGGTGCATACAGAGGGTTGCCAAGCCGCG 60 Query 380 AGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTAT 439 |||| ||| ||||||| ||| | || ||| ||||| ||||||||||||||||||| Sbjct 61 AGGTGGAGCTAATCCCAGAAAATGCATCGTAGTCCGGATCGTAGTCTGCAACTCGACTAC 120 Query 440 ATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCG 496 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 121 GTGAAGCTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATACGTTCCCG 177 >seq11968 Length=3642 Score = 163 bits (180), Expect = 9e-38 Identities = 129/152 (85%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 71 TCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGA 130 ||||||||||||| |||||||||||| ||||||||||| || | || |||||| || Sbjct 1 TCGAAGCAACGCGCAGAACCTTACCAGCTCTTGACATCCCGTGTTACATCGAGAGATCGA 60 Query 131 GGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGT 190 | | || |||||| || | | |||||||| ||||||| ||||||||||||||||||| Sbjct 61 TGGT-CCTCTTCGGAGGCGCG-GAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGT 118 Query 191 GAGATGTTGGGTTAAGTCCCGCAACGAGCGCA 222 |||||||||||||||||||||||||||||||| Sbjct 119 GAGATGTTGGGTTAAGTCCCGCAACGAGCGCA 150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503773512640