Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq6860 443 6e-122
seq7320 439 7e-121
seq9910 428 1e-117
seq13862 176 1e-41
seq11968 163 9e-38
>seq6860
Length=6169
Score = 443 bits (490), Expect = 6e-122
Identities = 402/501 (80%), Gaps = 18/501 (4%)
Strand=Plus/Plus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| || |||||||||||||||||||||| ||||| | ||||||||||||
Sbjct 1801 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGGCCCGCTCTAGCGGTGGAGCAG 1860
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCC-- 118
|||||||||||||| |||||||| |||||||||||| |||||||||| | | | |
Sbjct 1861 GTGGTTTAATTCGACGCAACGCGCAGAACCTTACCAGCCCTTGACATCC-CGGTCGCGGT 1919
Query 119 -TCTAGAGATAGAGGTTTCCCCTTCGGG-GGACAGAGTGACAGGTGATGCATGGTTGTCG 176
|| |||||| || | | ||||| |||| | | |||||||| ||||||| |||||
Sbjct 1920 TTCCAGAGATGGATTCCTTCAGTTCGGCTGGACCG-GAGACAGGTGCTGCATGGCTGTCG 1978
Query 177 TCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAG 236
||||||||||||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct 1979 TCAGCTCGTGTCGTGGGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCCGTCTTTAG 2038
Query 237 TTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCG-GAGGAAGGTG 295
|||| | |||| ||||| ||||||||| |||||||||||| || ||| ||||||||||
Sbjct 2039 TTGCTACCATTTAGTTGAGCACTCTAAAGAGACTGCCGGTGATAAGCCGCGAGGAAGGTG 2098
Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355
|||| |||||||| || ||||| |||||| | |||||||||||||||||||||||
Sbjct 2099 GGGATGACGTCAAGTCCTCATGGCCCTTACAAGGTGGGCTACACACGTGCTACAATG--- 2155
Query 356 AATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCG 415
|||| || || ||| || ||||||| || |||| | ||||||||||
Sbjct 2156 -------AGGGACGCAAAGGCGCAAGCCTTCGCAAATCTCAAAAAGCCG-TCTCAGTTCG 2207
Query 416 GATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCAT 475
||||| |||||||||||| |||||| |||||||||||||||||| ||||||||||
Sbjct 2208 GATTGGGCTCTGCAACTCGAGCCCATGAAGTTGGAATCGCTAGTAATCGCAGATCAGCAT 2267
Query 476 GCTACGGTGAATACGTTCCCG 496
||| |||||||||||||||||
Sbjct 2268 GCTGCGGTGAATACGTTCCCG 2288
>seq7320
Length=4144
Score = 439 bits (486), Expect = 7e-121
Identities = 409/518 (79%), Gaps = 26/518 (5%)
Strand=Plus/Plus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| || |||||||||||||||||||||| || ||||||||||||||||||
Sbjct 397 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 456
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAA------------------CCTTACCAAATCTT 102
||||||||||||||||||||||| |||| ||||||| |||
Sbjct 457 GTGGTTTAATTCGAAGCAACGCGCAGAATTCGATGCAAGCGAAAAACCTTACCTGGCCTT 516
Query 103 GACAT-CCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTG---ACA 158
||||| || || || | |||||| | || ||| || | |||| |||
Sbjct 517 GACATGCCACTAACGAAGC-AGAGATGCA--TTAGGTGCTCGAAAGAGAAAGTGGACACA 573
Query 159 GGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAG 218
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 GGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAG 633
Query 219 CGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGA 278
|||||||||| || ||||||||||| ||||||||||| || ||||||||||||
Sbjct 634 CGCAACCCTTGCCAATAATTGCCATCATTTAGTTGGGCACTTTATTGGGACTGCCGGTGA 693
Query 279 CAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACA 338
||||||||||||||||||||| |||||||| || ||||| |||||| | ||||||||||
Sbjct 694 CAAACCGGAGGAAGGTGGGGATGACGTCAAGTCCTCATGGCCCTTACGCGTTGGGCTACA 753
Query 339 CACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATA 398
||||||||||||||| | |||| ||||||| | |||||| ||| |||| | |
Sbjct 754 CACGTGCTACAATGGCGACTACAGTGGGCAGCCACCTCGCGAGAGGGAGCTAATCTCCAA 813
Query 399 AAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAG 458
|||| | ||||||||||||| || |||||||||||| ||||| |||||||||||
Sbjct 814 AAGTCG-TCTCAGTTCGGATCGTTCTCTGCAACTCGAGAGCGTGAAGGCGGAATCGCTAG 872
Query 459 TAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCG 496
|||||| ||||||||||| |||||||||||||||||
Sbjct 873 TAATCGCGGATCAGCATGCCGCGGTGAATACGTTCCCG 910
>seq9910
Length=308115
Score = 428 bits (474), Expect = 1e-117
Identities = 400/509 (79%), Gaps = 16/509 (3%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| || |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 260459 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGATGAT 260400
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||||||| |||||||||| ||||||||| | ||||||| || ||
Sbjct 260399 GTGGTTTAATTCGATGCAACGCGAAAAACCTTACCCACCTTTGACATGGCAGGAAGTTTC 260340
Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTG---ACAGGTGATGCATGGTTGTCGT 177
|||||| || ||| ||| || | || ||||||| ||||||| ||||||
Sbjct 260339 CAGAGATGGA---TTCGTGCTCGAAAGAGAACCTGCACACAGGTGCTGCATGGCTGTCGT 260283
Query 178 CAGCTCGTGTCGTGAGATGTTGGGTTAAGT----------CCCGCAACGAGCGCAACCCT 227
||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 260282 CAGCTCGTGTCGTGAGATGTTGGGTTATGTTGGGTTAACTCCCGCAACGAGCGCAACCCT 260223
Query 228 TAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGA 287
| || ||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 260222 TGCCAATAATTGCCATCATTTAGTTGGGCACTTTATTGGGACTGCCGGTGACAAACCGGA 260163
Query 288 GGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTA 347
|||||||||||| |||||||| || ||||| |||||||| ||||| ||||||| ||
Sbjct 260162 GGAAGGTGGGGATGACGTCAAGTCCTCATGGCCCTTATGGCCAGGGCTTCACACGTAATA 260103
Query 348 CAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTC 407
|||||| | |||| || | || || |||||||| ||| |||| || |||| | ||
Sbjct 260102 CAATGGTCGGTACAGAGAGTTGCCAACCCGCGAGGGGGAGCCAATCTCAGAAAGCCGATC 260043
Query 408 TCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAG 467
||| ||||||| || |||||||||| || |||||| ||||||||||||||||| |
Sbjct 260042 GTAGTCCGGATTGCAGGCTGCAACTCGCCTGCATGAAGTCGGAATCGCTAGTAATCGCGG 259983
Query 468 ATCAGCATGCTACGGTGAATACGTTCCCG 496
||||||||| |||||||||||||||||
Sbjct 259982 ATCAGCATGTCGCGGTGAATACGTTCCCG 259954
>seq13862
Length=422
Score = 176 bits (194), Expect = 1e-41
Identities = 145/177 (82%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 320 CCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCG 379
||||||| | ||||| ||||||| |||||||| ||||| |||| || || |||||
Sbjct 1 CCTTATGGGTAGGGCTTCACACGTCATACAATGGTGCATACAGAGGGTTGCCAAGCCGCG 60
Query 380 AGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTAT 439
|||| ||| ||||||| ||| | || ||| ||||| |||||||||||||||||||
Sbjct 61 AGGTGGAGCTAATCCCAGAAAATGCATCGTAGTCCGGATCGTAGTCTGCAACTCGACTAC 120
Query 440 ATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCG 496
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 121 GTGAAGCTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATACGTTCCCG 177
>seq11968
Length=3642
Score = 163 bits (180), Expect = 9e-38
Identities = 129/152 (85%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 71 TCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGA 130
||||||||||||| |||||||||||| ||||||||||| || | || |||||| ||
Sbjct 1 TCGAAGCAACGCGCAGAACCTTACCAGCTCTTGACATCCCGTGTTACATCGAGAGATCGA 60
Query 131 GGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGT 190
| | || |||||| || | | |||||||| ||||||| |||||||||||||||||||
Sbjct 61 TGGT-CCTCTTCGGAGGCGCG-GAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGT 118
Query 191 GAGATGTTGGGTTAAGTCCCGCAACGAGCGCA 222
||||||||||||||||||||||||||||||||
Sbjct 119 GAGATGTTGGGTTAAGTCCCGCAACGAGCGCA 150
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1503773512640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |