Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1 203 5e-50 seq13196 149 1e-33 seq6173 125 1e-26 seq3089 118 2e-24 seq13939 111 3e-22 seq11320 107 3e-21 seq7312 105 1e-20 seq631 96.9 6e-18 seq11478 95.1 2e-17 seq7355 93.3 7e-17 seq6822 80.6 4e-13 >seq1 Length=7560343 Score = 203 bits (224), Expect = 5e-50 Identities = 208/267 (78%), Gaps = 15/267 (6%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 || ||||| | ||||||||||||||||||| |||| | ||||||||||||||| ||| Sbjct 2926921 ACACGGTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCTGGACATCTAAGGGCATCTTAGA 2926862 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC----- 116 ||||||||||| |||| ||| | ||||| | |||| | ||||||||||||| Sbjct 2926861 CCTGTTATTGC-TCAATCTTGGGT-GGCTGAACGCCACTTATCCCTCTAAGAAGTTGGGG 2926804 Query 117 ----CAGCCACCA-ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTA 171 ||| |||| || |||| ||| |||||| | | ||||| | |||| Sbjct 2926803 GATGCAG--ACCACACGGGTGTCGCCTAA-CTAGTTAGCATGCCAGAGTCTCAATTGTTA 2926747 Query 172 TCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATA 231 ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| Sbjct 2926746 TCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAATGGCCATGCACCACCACCCAAG 2926687 Query 232 GAATCAAGAAAGAGCTATCAATCTGTC 258 |||| ||||||||||||||||||||| Sbjct 2926686 GAATTGAGAAAGAGCTATCAATCTGTC 2926660 >seq13196 Length=3207930 Score = 149 bits (164), Expect = 1e-33 Identities = 93/100 (93%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1194171 GTCTCCTTCGTTATCAGAATTAACCAGACAAATCACTTTACCAACTAAGAACGGCCATGC 1194112 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||| |||||||||||||| |||||| Sbjct 1194111 ACCACCACCCACAGAATCGAGAAAGAGCTATCAGTCTGTC 1194072 >seq6173 Length=2987371 Score = 125 bits (138), Expect = 1e-26 Identities = 184/252 (73%), Gaps = 19/252 (8%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA--CCTGTTATTGC-C 73 ||||| || || ||| |||| ||||| |||||||||||||| ||||||| || | Sbjct 586267 CAGTGCAGTGCTTATGCAGCCCCAGACATCCAAGGGCATCACAGATGCCTGTTA--GCAC 586324 Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAAC--C 128 ||| || || ||||| | |||| |||| |||||||||| | ||||||| | Sbjct 586325 TCAGTCTCAGAT-GGCTGAATGCCACGTGTCCTTCTAAGAAGCTGGGGGACACCAACTGC 586383 Query 129 ATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 || | || |||| |||||| | | |||| ||||||||| |||||||||| | Sbjct 586384 TCAGCGGGTGCCTAGCTAGTTAGCATGCCAGAGTCTTTTTCGTTATCAGAATTAACCAAA 586443 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 ||||| ||||||||| |||| |||||||||||||| |||| |||| || |||||| Sbjct 586444 CAAATTGCTCCACCAA----GAACAGCCATGCACCACCATCCATGGAATGGAGTAAGAGC 586499 Query 247 TATCAATCTGTC 258 |||||||||| Sbjct 586500 --TCAATCTGTC 586509 >seq3089 Length=1143662 Score = 118 bits (130), Expect = 2e-24 Identities = 178/249 (71%), Gaps = 22/249 (9%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| | | || |||| | |||||||||||||||||||| ||||| ||| || Sbjct 68951 GTCAGTGTAGCACATGCGCAGCCCTGGACATCTAAGGGCATCACAGAACTGTTGTTG-CT 69009 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG-T 133 | | || |||||| | |||| | |||||||||||||| | | |||| | Sbjct 69010 C-AGTTTTGGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGGGGACTCTGATAGCT 69068 Query 134 C----GATG--GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | || | ||| |||||| | | ||||| || |||||| ||||||||| || Sbjct 69069 CTGGAGTTGCATGACTAGTTAGCATGCCAGAGTCTCATTTGTTATCAGAATTAACCTGAT 69128 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 |||||||||| ||||||||||||||||||||| ||||| || | ||| Sbjct 69129 AAATCACTCC-----------ACGGCCATGCACCACCACCCACGGAATCGAGGA--GGCT 69175 Query 248 ATCAATCTG 256 ||||||||| Sbjct 69176 ATCAATCTG 69184 >seq13939 Length=2747889 Score = 111 bits (122), Expect = 3e-22 Identities = 82/95 (86%), Gaps = 8/95 (8%) Strand=Plus/Plus Query 164 GTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 223 |||||||||| |||||||||||||||||||||||||| ||||| | ||||||||||| Sbjct 1837913 GTTCGTTATCAGAATTAACCAGACAAATCACTCCACC----AAGAATGTCCATGCACCAC 1837968 Query 224 CACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||| |||||||||||||||||| |||||||| Sbjct 1837969 CAC----GGAATCAAGAAAGAGCTATAAATCTGTC 1837999 >seq11320 Length=9808007 Score = 107 bits (118), Expect = 3e-21 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233 |||||||||||||||||| ||||| |||||||||| ||||| | ||||||| ||| ||| Sbjct 8839270 GGAATTAACCAGACAAATTGCTCCAGCAACTAAGAATGGCCAAGTACCACCATCCACAGA 8839211 Query 234 ATCAAGAAAGAGCTATCAATCTGT 257 | |||||||||||||| ||||||| Sbjct 8839210 ACCAAGAAAGAGCTATTAATCTGT 8839187 >seq7312 Length=3298580 Score = 105 bits (116), Expect = 1e-20 Identities = 95/118 (81%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||| | | ||||| || |||||| |||||||||||| || || |||||| Sbjct 3069044 GCTAGTTAGCATGCCAGAGTCTCATTTGTTATCAGAATTAACCAGATAATTCT-TCCACC 3068986 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| ||||||||| |||||||| | |||| |||||||| |||||||||||| Sbjct 3068985 TTCTAAGACCGGCCATGCGCCACCACCTACTGAATTGAGAAAGAGTTATCAATCTGTC 3068928 >seq631 Length=1316175 Score = 96.9 bits (106), Expect = 6e-18 Identities = 81/97 (84%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| || |||| |||| | |||||||||||||||||||||||||||||| || Sbjct 1259031 GTCAGTGTAGTGCATGTGCAGCCCCGTACATCTAAGGGCATCACAGACCTGTTATTG-CT 1259089 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAA 111 ||| | || |||||| | |||| | |||||||||| Sbjct 1259090 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAA 1259125 >seq11478 Length=1560353 Score = 95.1 bits (104), Expect = 2e-17 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| |||| || ||| |||| || ||||| | |||||||| | |||| ||||||| Sbjct 1061762 GTCTCATTCGACATAGGACTTAAGCAAACAAACCTTTCCACCAATTCAGAATGGCCATGT 1061821 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||| ||| |||||||||||| || ||||| |||||| Sbjct 1061822 ACCACCAGCCACAGAATCAAGAAAAAGATATCAGTCTGTC 1061861 >seq7355 Length=5246521 Score = 93.3 bits (102), Expect = 7e-17 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||| |||||||||||||||||| ||||||||||||||||||| ||| | |||||| ||| Sbjct 2661912 AAAACACTCCACCAACTAAGAATGGCCATGCACCACCACCCACAGACTTGAGAAAGGGCT 2661853 Query 248 ATCAATCTGTC 258 |||||| |||| Sbjct 2661852 ATCAATTTGTC 2661842 Score = 75.2 bits (82), Expect = 2e-11 Identities = 59/71 (83%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||| ||||||||||||||||||| ||||||||||||||| || || | || ||| || Sbjct 1345173 AAAGCACTCCACCAACTAAGAACACCCATGCACCACCACCTATGGACTGAAAAAACCACT 1345114 Query 248 ATCAATCTGTC 258 |||||||||| Sbjct 1345113 GTCAATCTGTC 1345103 >seq6822 Length=528159 Score = 80.6 bits (88), Expect = 4e-13 Identities = 73/93 (78%), Gaps = 8/93 (9%) Strand=Plus/Plus Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225 || |||||||||||||||||| ||||| ||||| || |||| |||||||||| Sbjct 306368 TCCTTATCGGAATTAACCAGAAAAATCGCTCCATGAA--------GGCCGTGCACCACCA 306419 Query 226 CCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||| ||||| |||||||||||||| || ||| Sbjct 306420 TCCACGGAATCCAGAAAGAGCTATCAGTCAGTC 306452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796683759579