Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq1 203 5e-50
seq13196 149 1e-33
seq6173 125 1e-26
seq3089 118 2e-24
seq13939 111 3e-22
seq11320 107 3e-21
seq7312 105 1e-20
seq631 96.9 6e-18
seq11478 95.1 2e-17
seq7355 93.3 7e-17
seq6822 80.6 4e-13
>seq1
Length=7560343
Score = 203 bits (224), Expect = 5e-50
Identities = 208/267 (78%), Gaps = 15/267 (6%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
|| ||||| | ||||||||||||||||||| |||| | ||||||||||||||| |||
Sbjct 2926921 ACACGGTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCTGGACATCTAAGGGCATCTTAGA 2926862
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC----- 116
||||||||||| |||| ||| | ||||| | |||| | |||||||||||||
Sbjct 2926861 CCTGTTATTGC-TCAATCTTGGGT-GGCTGAACGCCACTTATCCCTCTAAGAAGTTGGGG 2926804
Query 117 ----CAGCCACCA-ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTA 171
||| |||| || |||| ||| |||||| | | ||||| | ||||
Sbjct 2926803 GATGCAG--ACCACACGGGTGTCGCCTAA-CTAGTTAGCATGCCAGAGTCTCAATTGTTA 2926747
Query 172 TCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATA 231
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 2926746 TCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAATGGCCATGCACCACCACCCAAG 2926687
Query 232 GAATCAAGAAAGAGCTATCAATCTGTC 258
|||| |||||||||||||||||||||
Sbjct 2926686 GAATTGAGAAAGAGCTATCAATCTGTC 2926660
>seq13196
Length=3207930
Score = 149 bits (164), Expect = 1e-33
Identities = 93/100 (93%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1194171 GTCTCCTTCGTTATCAGAATTAACCAGACAAATCACTTTACCAACTAAGAACGGCCATGC 1194112
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||| |||||| |||||||||||||| ||||||
Sbjct 1194111 ACCACCACCCACAGAATCGAGAAAGAGCTATCAGTCTGTC 1194072
>seq6173
Length=2987371
Score = 125 bits (138), Expect = 1e-26
Identities = 184/252 (73%), Gaps = 19/252 (8%)
Strand=Plus/Plus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA--CCTGTTATTGC-C 73
||||| || || ||| |||| ||||| |||||||||||||| ||||||| || |
Sbjct 586267 CAGTGCAGTGCTTATGCAGCCCCAGACATCCAAGGGCATCACAGATGCCTGTTA--GCAC 586324
Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAAC--C 128
||| || || ||||| | |||| |||| |||||||||| | ||||||| |
Sbjct 586325 TCAGTCTCAGAT-GGCTGAATGCCACGTGTCCTTCTAAGAAGCTGGGGGACACCAACTGC 586383
Query 129 ATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186
|| | || |||| |||||| | | |||| ||||||||| |||||||||| |
Sbjct 586384 TCAGCGGGTGCCTAGCTAGTTAGCATGCCAGAGTCTTTTTCGTTATCAGAATTAACCAAA 586443
Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246
||||| ||||||||| |||| |||||||||||||| |||| |||| || ||||||
Sbjct 586444 CAAATTGCTCCACCAA----GAACAGCCATGCACCACCATCCATGGAATGGAGTAAGAGC 586499
Query 247 TATCAATCTGTC 258
||||||||||
Sbjct 586500 --TCAATCTGTC 586509
>seq3089
Length=1143662
Score = 118 bits (130), Expect = 2e-24
Identities = 178/249 (71%), Gaps = 22/249 (9%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||| | | || |||| | |||||||||||||||||||| ||||| ||| ||
Sbjct 68951 GTCAGTGTAGCACATGCGCAGCCCTGGACATCTAAGGGCATCACAGAACTGTTGTTG-CT 69009
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG-T 133
| | || |||||| | |||| | |||||||||||||| | | |||| |
Sbjct 69010 C-AGTTTTGGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGGGGACTCTGATAGCT 69068
Query 134 C----GATG--GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
| | || | ||| |||||| | | ||||| || |||||| ||||||||| ||
Sbjct 69069 CTGGAGTTGCATGACTAGTTAGCATGCCAGAGTCTCATTTGTTATCAGAATTAACCTGAT 69128
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
|||||||||| ||||||||||||||||||||| ||||| || | |||
Sbjct 69129 AAATCACTCC-----------ACGGCCATGCACCACCACCCACGGAATCGAGGA--GGCT 69175
Query 248 ATCAATCTG 256
|||||||||
Sbjct 69176 ATCAATCTG 69184
>seq13939
Length=2747889
Score = 111 bits (122), Expect = 3e-22
Identities = 82/95 (86%), Gaps = 8/95 (8%)
Strand=Plus/Plus
Query 164 GTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 223
|||||||||| |||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 1837913 GTTCGTTATCAGAATTAACCAGACAAATCACTCCACC----AAGAATGTCCATGCACCAC 1837968
Query 224 CACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||| |||||||||||||||||| ||||||||
Sbjct 1837969 CAC----GGAATCAAGAAAGAGCTATAAATCTGTC 1837999
>seq11320
Length=9808007
Score = 107 bits (118), Expect = 3e-21
Identities = 74/84 (88%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233
|||||||||||||||||| ||||| |||||||||| ||||| | ||||||| ||| |||
Sbjct 8839270 GGAATTAACCAGACAAATTGCTCCAGCAACTAAGAATGGCCAAGTACCACCATCCACAGA 8839211
Query 234 ATCAAGAAAGAGCTATCAATCTGT 257
| |||||||||||||| |||||||
Sbjct 8839210 ACCAAGAAAGAGCTATTAATCTGT 8839187
>seq7312
Length=3298580
Score = 105 bits (116), Expect = 1e-20
Identities = 95/118 (81%), Gaps = 1/118 (1%)
Strand=Plus/Minus
Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200
|||| |||||| | | ||||| || |||||| |||||||||||| || || ||||||
Sbjct 3069044 GCTAGTTAGCATGCCAGAGTCTCATTTGTTATCAGAATTAACCAGATAATTCT-TCCACC 3068986
Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||| ||||||||| |||||||| | |||| |||||||| ||||||||||||
Sbjct 3068985 TTCTAAGACCGGCCATGCGCCACCACCTACTGAATTGAGAAAGAGTTATCAATCTGTC 3068928
>seq631
Length=1316175
Score = 96.9 bits (106), Expect = 6e-18
Identities = 81/97 (84%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|||||||||| || |||| |||| | |||||||||||||||||||||||||||||| ||
Sbjct 1259031 GTCAGTGTAGTGCATGTGCAGCCCCGTACATCTAAGGGCATCACAGACCTGTTATTG-CT 1259089
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAA 111
||| | || |||||| | |||| | ||||||||||
Sbjct 1259090 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAA 1259125
>seq11478
Length=1560353
Score = 95.1 bits (104), Expect = 2e-17
Identities = 81/100 (81%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
||||| |||| || ||| |||| || ||||| | |||||||| | |||| |||||||
Sbjct 1061762 GTCTCATTCGACATAGGACTTAAGCAAACAAACCTTTCCACCAATTCAGAATGGCCATGT 1061821
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||| ||| |||||||||||| || ||||| ||||||
Sbjct 1061822 ACCACCAGCCACAGAATCAAGAAAAAGATATCAGTCTGTC 1061861
>seq7355
Length=5246521
Score = 93.3 bits (102), Expect = 7e-17
Identities = 63/71 (89%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
||| |||||||||||||||||| ||||||||||||||||||| ||| | |||||| |||
Sbjct 2661912 AAAACACTCCACCAACTAAGAATGGCCATGCACCACCACCCACAGACTTGAGAAAGGGCT 2661853
Query 248 ATCAATCTGTC 258
|||||| ||||
Sbjct 2661852 ATCAATTTGTC 2661842
Score = 75.2 bits (82), Expect = 2e-11
Identities = 59/71 (83%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
||| ||||||||||||||||||| ||||||||||||||| || || | || ||| ||
Sbjct 1345173 AAAGCACTCCACCAACTAAGAACACCCATGCACCACCACCTATGGACTGAAAAAACCACT 1345114
Query 248 ATCAATCTGTC 258
||||||||||
Sbjct 1345113 GTCAATCTGTC 1345103
>seq6822
Length=528159
Score = 80.6 bits (88), Expect = 4e-13
Identities = 73/93 (78%), Gaps = 8/93 (9%)
Strand=Plus/Plus
Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225
|| |||||||||||||||||| ||||| ||||| || |||| ||||||||||
Sbjct 306368 TCCTTATCGGAATTAACCAGAAAAATCGCTCCATGAA--------GGCCGTGCACCACCA 306419
Query 226 CCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||| ||||| |||||||||||||| || |||
Sbjct 306420 TCCACGGAATCCAGAAAGAGCTATCAGTCAGTC 306452
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796683759579
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |