Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq12938 221 2e-55 seq9910 221 2e-55 seq8424 197 3e-48 seq6860 181 2e-43 seq11968 176 9e-42 seq6993 159 7e-37 seq7320 132 9e-29 >seq12938 Length=19539 Score = 221 bits (244), Expect = 2e-55 Identities = 240/312 (77%), Gaps = 5/312 (2%) Strand=Plus/Plus Query 30 ACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAAC- 88 |||||||| | |||||| ||| |||| |||| || ||||| ||||||| Sbjct 13324 ACGCCAGTTGCTATGGAGCCATCCTTGAAATACCACCCTGGTAATATTGAGGTTCTAACT 13383 Query 89 CGGACGACGTATAACCGTTGACG-GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTC 147 | | | ||| || ||| |||| |||| |||| | ||| |||||||||||||||||| Sbjct 13384 CTGTCC-CGT-TATCCGG-GACGAGGACCATGTCTGGTGGGTAGTTTGACTGGGGCGGTC 13440 Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207 ||||| ||||||||||||||| | | ||| | | |||||| ||| ||||| || ||| Sbjct 13441 TCCTCCTAAAGAGTAACGGAGGAGTACGAAGGTGCGCTCAGCGTGGTCGGAAATCACGCG 13500 Query 208 CACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAA 267 | ||| ||||||||||| | | || ||||||| |||| |||||| |||||| |||||| Sbjct 13501 TAGAGTATAAAGGCAAAAGCGCGCTTAACTGCGAGACCCACAAGTCGAGCAGGTACGAAA 13560 Query 268 GTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCT 327 || || |||| |||||||| ||| ||| |||||| |||| |||||| ||||||||||| | Sbjct 13561 GTAGGTCTTAGTGATCCGGTGGTTCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGT 13620 Query 328 ACCCTGGGGATA 339 || ||||||||| Sbjct 13621 ACTCTGGGGATA 13632 >seq9910 Length=308115 Score = 221 bits (244), Expect = 2e-55 Identities = 240/312 (77%), Gaps = 5/312 (2%) Strand=Plus/Minus Query 30 ACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAAC- 88 |||||||| | |||||| ||| |||| |||| || ||||| ||||||| Sbjct 256974 ACGCCAGTTGCTATGGAGCCATCCTTGAAATACCACCCTGGTAATATTGAGGTTCTAACT 256915 Query 89 CGGACGACGTATAACCGTTGACG-GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTC 147 | | | ||| || ||| |||| |||| |||| | ||| |||||||||||||||||| Sbjct 256914 CTGTCC-CGT-TATCCGG-GACGAGGACCATGTCTGGTGGGTAGTTTGACTGGGGCGGTC 256858 Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207 ||||| ||||||||||||||| | | ||| | | |||||| ||| ||||| || ||| Sbjct 256857 TCCTCCTAAAGAGTAACGGAGGAGTACGAAGGTGCGCTCAGCGTGGTCGGAAATCACGCG 256798 Query 208 CACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAA 267 | ||| ||||||||||| | | || ||||||| |||| |||||| |||||| |||||| Sbjct 256797 TAGAGTATAAAGGCAAAAGCGCGCTTAACTGCGAGACCCACAAGTCGAGCAGGTACGAAA 256738 Query 268 GTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCT 327 || || |||| |||||||| ||| ||| |||||| |||| |||||| ||||||||||| | Sbjct 256737 GTAGGTCTTAGTGATCCGGTGGTTCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGT 256678 Query 328 ACCCTGGGGATA 339 || ||||||||| Sbjct 256677 ACTCTGGGGATA 256666 >seq8424 Length=263062 Score = 197 bits (218), Expect = 3e-48 Identities = 230/309 (74%), Gaps = 1/309 (0%) Strand=Plus/Minus Query 31 CGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAACCG 90 |||||| || |||||| | ||| |||| |||| | || ||||| |||||||| Sbjct 259822 CGCCAGCCTTGGTGGAGCCACCCTTGAAATACCACCCTTATTACTATGGATGTCTAACCG 259763 Query 91 GACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCC 150 ||| || ||| ||||||| ||| | ||| ||||||||||||||||||||| Sbjct 259762 CGGCCCGT-TATCCGGGTCCGGGACAATGTATGGTGGGTAGTTTGACTGGGGCGGTCGCC 259704 Query 151 TCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC 210 ||| |||||||||||||||||| | | | | ||||| || ||||| | | ||| Sbjct 259703 TCCTAAAGAGTAACGGAGGCGCGCGATGGTGGGCTCAGAACGGTCGGAAATCGTTCGCTG 259644 Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 ||||||| |||| ||| || ||||||||| || |||||| ||||| |||||||||| Sbjct 259643 AGTGCAATGGCATAAGCCTGCCTGACTGCGAGACTGACAAGTCGAGCAGAGACGAAAGTC 259584 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || | || |||||||| ||| | | ||||| |||| |||||| ||||||||||| ||| Sbjct 259583 GGTCATAGTGATCCGGTGGTCCCGCGTGGAAGGGCCATCGCTCAACGGATAAAAGGTACG 259524 Query 331 CTGGGGATA 339 | ||||||| Sbjct 259523 CCGGGGATA 259515 >seq6860 Length=6169 Score = 181 bits (200), Expect = 2e-43 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 |||||||| | | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 5645 CGGGACAGCGCATGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 5704 Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229 || | | | || ||||| || ||||| | | || ||| || |||||||| | Sbjct 5705 CGTGCGATGGTAGGCTCAGAACGGTCGGAAATCGTTCGTCGAGTATAATGGCAAAAGCCT 5764 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | ||||||||| || |||||| ||||| |||||||||||| | || |||||||| || Sbjct 5765 GCCTGACTGCGAGACTAACAAGTCGAGCAGAGACGAAAGTCGGTCATAGTGATCCGGTGG 5824 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | ||||| |||| |||||| ||||||||||| ||| | ||||||| Sbjct 5825 TCCCTCGTGGAAGGGCCATCGCTCAACGGATAAAAGGTACGCCGGGGATA 5874 >seq11968 Length=3642 Score = 176 bits (194), Expect = 9e-42 Identities = 225/309 (73%), Gaps = 11/309 (4%) Strand=Plus/Plus Query 31 CGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAACCG 90 |||||| || |||||| ||| |||| |||| ||| | ||||| |||||||| Sbjct 3344 CGCCAGCTCTCGTGGAGCCATCCTTGAAATACCACCCTTGTAGATATGGATGTCTAACCG 3403 Query 91 GACGA-CGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGC 149 ||| | | | | | |||||||||| | |||||||||||||||||||| | Sbjct 3404 --CGATCCTTCATCGGGATCCGGGACAGTGCATGGTGGGCAGTTTGACTGGGGCGGGGGG 3461 Query 150 CTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCA 209 |||||||||||| | | ||| | | |||||| ||| ||||| || ||| | Sbjct 3462 --------GAGTAACGGAGGAGTACGAAGGTGCGCTCAGCGTGGTCGGAAATCACGCGTA 3513 Query 210 CAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGT 269 ||| ||||||||||| | | || ||||||| |||| |||||| |||||| |||||||| Sbjct 3514 GAGTATAAAGGCAAAAGCGCGCTTAACTGCGAGACCCACAAGTCGAGCAGGTACGAAAGT 3573 Query 270 CGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTAC 329 || |||| |||||||| ||| || |||| |||| |||||| ||||||||||| ||| Sbjct 3574 AGGTCTTAGTGATCCGGTGGTTCTACGTGGACGGGCCATCGCTCAACGGATAAAAGGTAC 3633 Query 330 CCTGGGGAT 338 |||||||| Sbjct 3634 TCTGGGGAT 3642 >seq6993 Length=5165 Score = 159 bits (176), Expect = 7e-37 Identities = 175/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 ||||||||| | ||||||||||||||||||||| |||||||||| |||| ||||| Sbjct 2885 GGGACAGTGCATGGTAGGCAGTTTGACTGGGGCGGTCTCCTCCCAAAGGGTAAAGGAGGA 2944 Query 171 GCCCAAAGATACCCTCAGCTTGGAT-GGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229 | | ||| ||| || || | | | ||| | | || | ||||||| |||| ||| || Sbjct 2945 GTTCGAAGGTACGCT-AGTTACGGTCGGACATCGTGACGATAGTGCAATGGCATAAGCGT 3003 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | || ||||||| || |||||| ||||| |||||| | | || |||||||| || Sbjct 3004 GCTTAACTGCGAGACTGACAAGTCGAGCAGATGCGAAAGCAGAACATAGTGATCCGGTGG 3063 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | ||| |||||| |||| |||||| ||||||||||| ||| ||||||||| Sbjct 3064 TTCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTGGGGATA 3113 >seq7320 Length=4144 Score = 132 bits (146), Expect = 9e-29 Identities = 193/269 (72%), Gaps = 3/269 (1%) Strand=Plus/Plus Query 30 ACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGAT-TTCTAAC 88 |||| ||| ||| ||||||| |||| |||| |||| || || || || ||||||| Sbjct 3878 ACGCTAGTTCTCATGGAGCCGACGTTGAAATACCACCC-TGGTGCGTTTGAGGTTCTAAC 3936 Query 89 CGGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCG 148 | | | | || | | ||||||||| | ||||||||||||||||||||| Sbjct 3937 CC-AGGTCCCTTATCGGGATCGGGGACAGTGCATGGTAGGCAGTTTGACTGGGGCGGTCT 3995 Query 149 CCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGC 208 |||||||||| |||||||||| | | ||| ||| || | || ||| | | | | Sbjct 3996 CCTCCCAAAGTGTAACGGAGGAGTTCGAAGGTACGCTTGGTACGGTCGGACATCGTACCT 4055 Query 209 ACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAG 268 | ||||||| |||||||| ||| || ||||||| ||| |||||| |||||| |||||| Sbjct 4056 AAAGTGCAATGGCAAAAGCGTGCTTAACTGCGAGACCGACAAGTCGAGCAGGTGCGAAAG 4115 Query 269 TCGGGCTTAATGATCCGGCGGTGCTGAAT 297 || | || |||||||| ||| ||| || Sbjct 4116 CAGGACATAGTGATCCGGTGGTTCTGTAT 4144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982252060384