Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq12938 221 2e-55
seq9910 221 2e-55
seq8424 197 3e-48
seq6860 181 2e-43
seq11968 176 9e-42
seq6993 159 7e-37
seq7320 132 9e-29
>seq12938
Length=19539
Score = 221 bits (244), Expect = 2e-55
Identities = 240/312 (77%), Gaps = 5/312 (2%)
Strand=Plus/Plus
Query 30 ACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAAC- 88
|||||||| | |||||| ||| |||| |||| || ||||| |||||||
Sbjct 13324 ACGCCAGTTGCTATGGAGCCATCCTTGAAATACCACCCTGGTAATATTGAGGTTCTAACT 13383
Query 89 CGGACGACGTATAACCGTTGACG-GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTC 147
| | | ||| || ||| |||| |||| |||| | ||| ||||||||||||||||||
Sbjct 13384 CTGTCC-CGT-TATCCGG-GACGAGGACCATGTCTGGTGGGTAGTTTGACTGGGGCGGTC 13440
Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207
||||| ||||||||||||||| | | ||| | | |||||| ||| ||||| || |||
Sbjct 13441 TCCTCCTAAAGAGTAACGGAGGAGTACGAAGGTGCGCTCAGCGTGGTCGGAAATCACGCG 13500
Query 208 CACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAA 267
| ||| ||||||||||| | | || ||||||| |||| |||||| |||||| ||||||
Sbjct 13501 TAGAGTATAAAGGCAAAAGCGCGCTTAACTGCGAGACCCACAAGTCGAGCAGGTACGAAA 13560
Query 268 GTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCT 327
|| || |||| |||||||| ||| ||| |||||| |||| |||||| ||||||||||| |
Sbjct 13561 GTAGGTCTTAGTGATCCGGTGGTTCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGT 13620
Query 328 ACCCTGGGGATA 339
|| |||||||||
Sbjct 13621 ACTCTGGGGATA 13632
>seq9910
Length=308115
Score = 221 bits (244), Expect = 2e-55
Identities = 240/312 (77%), Gaps = 5/312 (2%)
Strand=Plus/Minus
Query 30 ACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAAC- 88
|||||||| | |||||| ||| |||| |||| || ||||| |||||||
Sbjct 256974 ACGCCAGTTGCTATGGAGCCATCCTTGAAATACCACCCTGGTAATATTGAGGTTCTAACT 256915
Query 89 CGGACGACGTATAACCGTTGACG-GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTC 147
| | | ||| || ||| |||| |||| |||| | ||| ||||||||||||||||||
Sbjct 256914 CTGTCC-CGT-TATCCGG-GACGAGGACCATGTCTGGTGGGTAGTTTGACTGGGGCGGTC 256858
Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207
||||| ||||||||||||||| | | ||| | | |||||| ||| ||||| || |||
Sbjct 256857 TCCTCCTAAAGAGTAACGGAGGAGTACGAAGGTGCGCTCAGCGTGGTCGGAAATCACGCG 256798
Query 208 CACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAA 267
| ||| ||||||||||| | | || ||||||| |||| |||||| |||||| ||||||
Sbjct 256797 TAGAGTATAAAGGCAAAAGCGCGCTTAACTGCGAGACCCACAAGTCGAGCAGGTACGAAA 256738
Query 268 GTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCT 327
|| || |||| |||||||| ||| ||| |||||| |||| |||||| ||||||||||| |
Sbjct 256737 GTAGGTCTTAGTGATCCGGTGGTTCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGT 256678
Query 328 ACCCTGGGGATA 339
|| |||||||||
Sbjct 256677 ACTCTGGGGATA 256666
>seq8424
Length=263062
Score = 197 bits (218), Expect = 3e-48
Identities = 230/309 (74%), Gaps = 1/309 (0%)
Strand=Plus/Minus
Query 31 CGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAACCG 90
|||||| || |||||| | ||| |||| |||| | || ||||| ||||||||
Sbjct 259822 CGCCAGCCTTGGTGGAGCCACCCTTGAAATACCACCCTTATTACTATGGATGTCTAACCG 259763
Query 91 GACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCC 150
||| || ||| ||||||| ||| | ||| |||||||||||||||||||||
Sbjct 259762 CGGCCCGT-TATCCGGGTCCGGGACAATGTATGGTGGGTAGTTTGACTGGGGCGGTCGCC 259704
Query 151 TCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC 210
||| |||||||||||||||||| | | | | ||||| || ||||| | | |||
Sbjct 259703 TCCTAAAGAGTAACGGAGGCGCGCGATGGTGGGCTCAGAACGGTCGGAAATCGTTCGCTG 259644
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270
||||||| |||| ||| || ||||||||| || |||||| ||||| ||||||||||
Sbjct 259643 AGTGCAATGGCATAAGCCTGCCTGACTGCGAGACTGACAAGTCGAGCAGAGACGAAAGTC 259584
Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330
|| | || |||||||| ||| | | ||||| |||| |||||| ||||||||||| |||
Sbjct 259583 GGTCATAGTGATCCGGTGGTCCCGCGTGGAAGGGCCATCGCTCAACGGATAAAAGGTACG 259524
Query 331 CTGGGGATA 339
| |||||||
Sbjct 259523 CCGGGGATA 259515
>seq6860
Length=6169
Score = 181 bits (200), Expect = 2e-43
Identities = 178/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
|||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5645 CGGGACAGCGCATGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 5704
Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229
|| | | | || ||||| || ||||| | | || ||| || |||||||| |
Sbjct 5705 CGTGCGATGGTAGGCTCAGAACGGTCGGAAATCGTTCGTCGAGTATAATGGCAAAAGCCT 5764
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| ||||||||| || |||||| ||||| |||||||||||| | || |||||||| ||
Sbjct 5765 GCCTGACTGCGAGACTAACAAGTCGAGCAGAGACGAAAGTCGGTCATAGTGATCCGGTGG 5824
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| | ||||| |||| |||||| ||||||||||| ||| | |||||||
Sbjct 5825 TCCCTCGTGGAAGGGCCATCGCTCAACGGATAAAAGGTACGCCGGGGATA 5874
>seq11968
Length=3642
Score = 176 bits (194), Expect = 9e-42
Identities = 225/309 (73%), Gaps = 11/309 (4%)
Strand=Plus/Plus
Query 31 CGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAACCG 90
|||||| || |||||| ||| |||| |||| ||| | ||||| ||||||||
Sbjct 3344 CGCCAGCTCTCGTGGAGCCATCCTTGAAATACCACCCTTGTAGATATGGATGTCTAACCG 3403
Query 91 GACGA-CGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGC 149
||| | | | | | |||||||||| | |||||||||||||||||||| |
Sbjct 3404 --CGATCCTTCATCGGGATCCGGGACAGTGCATGGTGGGCAGTTTGACTGGGGCGGGGGG 3461
Query 150 CTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCA 209
|||||||||||| | | ||| | | |||||| ||| ||||| || ||| |
Sbjct 3462 --------GAGTAACGGAGGAGTACGAAGGTGCGCTCAGCGTGGTCGGAAATCACGCGTA 3513
Query 210 CAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGT 269
||| ||||||||||| | | || ||||||| |||| |||||| |||||| ||||||||
Sbjct 3514 GAGTATAAAGGCAAAAGCGCGCTTAACTGCGAGACCCACAAGTCGAGCAGGTACGAAAGT 3573
Query 270 CGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTAC 329
|| |||| |||||||| ||| || |||| |||| |||||| ||||||||||| |||
Sbjct 3574 AGGTCTTAGTGATCCGGTGGTTCTACGTGGACGGGCCATCGCTCAACGGATAAAAGGTAC 3633
Query 330 CCTGGGGAT 338
||||||||
Sbjct 3634 TCTGGGGAT 3642
>seq6993
Length=5165
Score = 159 bits (176), Expect = 7e-37
Identities = 175/230 (76%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
||||||||| | ||||||||||||||||||||| |||||||||| |||| |||||
Sbjct 2885 GGGACAGTGCATGGTAGGCAGTTTGACTGGGGCGGTCTCCTCCCAAAGGGTAAAGGAGGA 2944
Query 171 GCCCAAAGATACCCTCAGCTTGGAT-GGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229
| | ||| ||| || || | | | ||| | | || | ||||||| |||| ||| ||
Sbjct 2945 GTTCGAAGGTACGCT-AGTTACGGTCGGACATCGTGACGATAGTGCAATGGCATAAGCGT 3003
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| || ||||||| || |||||| ||||| |||||| | | || |||||||| ||
Sbjct 3004 GCTTAACTGCGAGACTGACAAGTCGAGCAGATGCGAAAGCAGAACATAGTGATCCGGTGG 3063
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| ||| |||||| |||| |||||| ||||||||||| ||| |||||||||
Sbjct 3064 TTCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTGGGGATA 3113
>seq7320
Length=4144
Score = 132 bits (146), Expect = 9e-29
Identities = 193/269 (72%), Gaps = 3/269 (1%)
Strand=Plus/Plus
Query 30 ACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGAT-TTCTAAC 88
|||| ||| ||| ||||||| |||| |||| |||| || || || || |||||||
Sbjct 3878 ACGCTAGTTCTCATGGAGCCGACGTTGAAATACCACCC-TGGTGCGTTTGAGGTTCTAAC 3936
Query 89 CGGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCG 148
| | | | || | | ||||||||| | |||||||||||||||||||||
Sbjct 3937 CC-AGGTCCCTTATCGGGATCGGGGACAGTGCATGGTAGGCAGTTTGACTGGGGCGGTCT 3995
Query 149 CCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGC 208
|||||||||| |||||||||| | | ||| ||| || | || ||| | | | |
Sbjct 3996 CCTCCCAAAGTGTAACGGAGGAGTTCGAAGGTACGCTTGGTACGGTCGGACATCGTACCT 4055
Query 209 ACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAG 268
| ||||||| |||||||| ||| || ||||||| ||| |||||| |||||| ||||||
Sbjct 4056 AAAGTGCAATGGCAAAAGCGTGCTTAACTGCGAGACCGACAAGTCGAGCAGGTGCGAAAG 4115
Query 269 TCGGGCTTAATGATCCGGCGGTGCTGAAT 297
|| | || |||||||| ||| ||| ||
Sbjct 4116 CAGGACATAGTGATCCGGTGGTTCTGTAT 4144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982252060384
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