Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq11968 136 4e-30 seq9910 132 5e-29 seq6860 132 5e-29 seq8424 127 2e-27 seq10654 114 1e-23 seq7320 114 1e-23 seq6993 114 1e-23 >seq11968 Length=3642 Score = 136 bits (150), Expect = 4e-30 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | |||||| | | |||||||||| | | | ||||||| ||||| Sbjct 3271 GGGTCTTTCCGTCTGACCGCGGGAACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAG 3212 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | | | ||||||| ||| |||||||||||||||||||||||||||| Sbjct 3211 CCTATGCTGGAGACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGA 3152 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||| Sbjct 3151 CAAGGAATTTCGCTACCTTAGGACCGTTA 3123 >seq9910 Length=308115 Score = 132 bits (146), Expect = 5e-29 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| |||||||| | |||||||||| | | | | ||||||||| Sbjct 257049 CGGGGTCTTTCCGTCTAGCCGCGGGTACACCGCATCTTCACGGCGATTTCGATTTCACTG 257108 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 ||| | | ||||||| || |||||||||||||||||||||||||| Sbjct 257109 AGCCTCTGCTGGAGACAGCGCCCCCATCATTATGCCATTCGTGCAGGTCGGAACTTACCC 257168 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 257169 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 257228 >seq6860 Length=6169 Score = 132 bits (146), Expect = 5e-29 Identities = 119/152 (78%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | ||| || | | |||||||||| | | | ||||||||||| Sbjct 5490 CGGGGTCTTTCCGTCTGACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCACTG 5431 Query 83 AGCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 || | | ||| |||||| ||| ||||||||||||||||||||||||| Sbjct 5430 AGTCTATGTTTGGAGACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 5371 Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||||| Sbjct 5370 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 5339 >seq8424 Length=263062 Score = 127 bits (140), Expect = 2e-27 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | ||| || | | |||||||||| | | | ||||||||||| Sbjct 259898 CGGGGTCTTTCCGTCTAACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCACTG 259957 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | | | ||||||| ||| |||| ||||||||||||||||||||| Sbjct 259958 AGTCTATGCTGGAGACAGCGGGGAAGTCGTTACGCCATGCGTGCAGGTCGGAACTTACCC 260017 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 |||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 260018 GACAAGGAATTTCGCTACCTTAGGCCCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 260077 >seq10654 Length=1634 Score = 114 bits (126), Expect = 1e-23 Identities = 115/151 (76%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||| |||||| | ||||| |||| | | | ||| ||| |||| Sbjct 1464 GGGGTCTTTCCGTCTTTCCGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGA 1405 Query 84 GCTCAC-GGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | || ||||||| ||| |||||||||||||||||||||||||| Sbjct 1404 G-TCTCTGGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 1346 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 1345 GACAAGGAATTTCGCTACCTTAGGACCGTTA 1315 >seq7320 Length=4144 Score = 114 bits (126), Expect = 1e-23 Identities = 115/151 (76%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||| |||||| | ||||| |||| | | | ||| ||| |||| Sbjct 3802 GGGGTCTTTCCGTCTTTCCGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGA 3743 Query 84 GCTCAC-GGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | || ||||||| ||| |||||||||||||||||||||||||| Sbjct 3742 G-TCTCTGGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 3684 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 3683 GACAAGGAATTTCGCTACCTTAGGACCGTTA 3653 >seq6993 Length=5165 Score = 114 bits (126), Expect = 1e-23 Identities = 115/151 (76%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||| |||||| | ||||| |||| | | | ||| ||| |||| Sbjct 2729 GGGGTCTTTCCGTCTTTCCGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGA 2670 Query 84 GCTCAC-GGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | || ||||||| ||| |||||||||||||||||||||||||| Sbjct 2669 G-TCTCTGGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 2611 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 2610 GACAAGGAATTTCGCTACCTTAGGACCGTTA 2580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547120172241