Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01001138.1
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
seq11968 136 4e-30
seq9910 132 5e-29
seq6860 132 5e-29
seq8424 127 2e-27
seq10654 114 1e-23
seq7320 114 1e-23
seq6993 114 1e-23
>seq11968
Length=3642
Score = 136 bits (150), Expect = 4e-30
Identities = 117/149 (79%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| | |||||| | | |||||||||| | | | ||||||| |||||
Sbjct 3271 GGGTCTTTCCGTCTGACCGCGGGAACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAG 3212
Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144
| | | | ||||||| ||| ||||||||||||||||||||||||||||
Sbjct 3211 CCTATGCTGGAGACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGA 3152
Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||||||
Sbjct 3151 CAAGGAATTTCGCTACCTTAGGACCGTTA 3123
>seq9910
Length=308115
Score = 132 bits (146), Expect = 5e-29
Identities = 132/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
|||||||||| |||| |||||||| | |||||||||| | | | | |||||||||
Sbjct 257049 CGGGGTCTTTCCGTCTAGCCGCGGGTACACCGCATCTTCACGGCGATTTCGATTTCACTG 257108
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
||| | | ||||||| || ||||||||||||||||||||||||||
Sbjct 257109 AGCCTCTGCTGGAGACAGCGCCCCCATCATTATGCCATTCGTGCAGGTCGGAACTTACCC 257168
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202
||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 257169 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 257228
>seq6860
Length=6169
Score = 132 bits (146), Expect = 5e-29
Identities = 119/152 (78%), Gaps = 1/152 (1%)
Strand=Plus/Minus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
|||||||||| |||| | ||| || | | |||||||||| | | | |||||||||||
Sbjct 5490 CGGGGTCTTTCCGTCTGACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCACTG 5431
Query 83 AGCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141
|| | | ||| |||||| ||| |||||||||||||||||||||||||
Sbjct 5430 AGTCTATGTTTGGAGACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 5371
Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||||
Sbjct 5370 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 5339
>seq8424
Length=263062
Score = 127 bits (140), Expect = 2e-27
Identities = 131/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
|||||||||| |||| | ||| || | | |||||||||| | | | |||||||||||
Sbjct 259898 CGGGGTCTTTCCGTCTAACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCACTG 259957
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
|| | | | ||||||| ||| |||| |||||||||||||||||||||
Sbjct 259958 AGTCTATGCTGGAGACAGCGGGGAAGTCGTTACGCCATGCGTGCAGGTCGGAACTTACCC 260017
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202
|||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 260018 GACAAGGAATTTCGCTACCTTAGGCCCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 260077
>seq10654
Length=1634
Score = 114 bits (126), Expect = 1e-23
Identities = 115/151 (76%), Gaps = 2/151 (1%)
Strand=Plus/Minus
Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83
||||||||| |||| |||||| | ||||| |||| | | | ||| ||| ||||
Sbjct 1464 GGGGTCTTTCCGTCTTTCCGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGA 1405
Query 84 GCTCAC-GGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
| || | || ||||||| ||| ||||||||||||||||||||||||||
Sbjct 1404 G-TCTCTGGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 1346
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||||||||
Sbjct 1345 GACAAGGAATTTCGCTACCTTAGGACCGTTA 1315
>seq7320
Length=4144
Score = 114 bits (126), Expect = 1e-23
Identities = 115/151 (76%), Gaps = 2/151 (1%)
Strand=Plus/Minus
Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83
||||||||| |||| |||||| | ||||| |||| | | | ||| ||| ||||
Sbjct 3802 GGGGTCTTTCCGTCTTTCCGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGA 3743
Query 84 GCTCAC-GGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
| || | || ||||||| ||| ||||||||||||||||||||||||||
Sbjct 3742 G-TCTCTGGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 3684
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||||||||
Sbjct 3683 GACAAGGAATTTCGCTACCTTAGGACCGTTA 3653
>seq6993
Length=5165
Score = 114 bits (126), Expect = 1e-23
Identities = 115/151 (76%), Gaps = 2/151 (1%)
Strand=Plus/Minus
Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83
||||||||| |||| |||||| | ||||| |||| | | | ||| ||| ||||
Sbjct 2729 GGGGTCTTTCCGTCTTTCCGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGA 2670
Query 84 GCTCAC-GGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
| || | || ||||||| ||| ||||||||||||||||||||||||||
Sbjct 2669 G-TCTCTGGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 2611
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||||||||
Sbjct 2610 GACAAGGAATTTCGCTACCTTAGGACCGTTA 2580
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547120172241
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |