Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq9910 327 2e-87
seq13554 302 1e-79
seq6860 248 2e-63
>seq9910
Length=308115
Score = 327 bits (362), Expect = 2e-87
Identities = 286/352 (81%), Gaps = 3/352 (1%)
Strand=Plus/Plus
Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61
||||||| |||||| ||||| | | |||||||||||| ||||||||||||||||||||
Sbjct 260917 TTTACAACCCGAAGGCCTTCATCCTG-CACGCGGCATTG-CTGGATCAGGCTTTCGCCCA 260974
Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260975 TTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 261034
Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181
||| ||| || |||||||||||||| ||| ||||||||||| ||||||| |||||||||
Sbjct 261035 GTGGCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTAGGTGAGCTTTTACCTCAC 261094
Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241
| ||||||||||| || | ||| || || ||| ||| |||||| ||||| |||||
Sbjct 261095 CTACTAGCTAATCAGATATCGGCCGCTCCATTAACGCTAGGTCCGAAGATCCCCAGCTTT 261154
Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301
| ||| ||| |||||||||||||||| |||| ||||||||||| || |
Sbjct 261155 CCCCCTCAGGGCGTATGCGGTATTAGCTAATCTTTCGACTAGTTATCCCCCATTATTGGA 261214
Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC-TCAAGAGAAGCAAGCT 352
| |||| | ||||||||||||| |||| ||| || || ||||||||
Sbjct 261215 TACGTTCCGATATATTACTCACCCGTTCGCCACTCGCCACCAGGAGCAAGCT 261266
>seq13554
Length=1007
Score = 302 bits (334), Expect = 1e-79
Identities = 271/337 (80%), Gaps = 20/337 (6%)
Strand=Plus/Plus
Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
|||||||| || ||| ||||| | ||| |||||||||| ||||||||||||||| |||||
Sbjct 69 CTTTACAACCCTAAGGCCTTCAT-CACTCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 126
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 186
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 187 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCCCA 246
Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGA-AGGTCCCCTGCT 239
||||||||||||| || ||| || | ||||| | | ||
Sbjct 247 CCAACTAGCTAAT--AACGCGGGCCAAT---------CCTTCCCCGATAAAT------CT 289
Query 240 TTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299
||| |||||||| |||||||||||||| | |||||| | ||| || || |
Sbjct 290 TTCCCCCGTAGGGCGTATGCGGTATTAATTCCAGTTTCCCGGAGCTATTCCGCAGGAAAG 349
Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336
|| | |||| | || ||||||||||||| ||| |||
Sbjct 350 GGTATGTTCCCACGCGTTACTCACCCGTCTGCCACTC 386
>seq6860
Length=6169
Score = 248 bits (274), Expect = 2e-63
Identities = 259/336 (77%), Gaps = 18/336 (5%)
Strand=Plus/Minus
Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
|||||||| || | | ||||| | ||| |||||||||| |||||||||||| || | |||
Sbjct 1369 CTTTACAACCCTAGGGCCTTCAT-CACTCACGCGGCAT-GGCTGGATCAGGGTTGCCCCC 1312
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
|||||||||||||||||||||||||||||||||||||| ||| ||||||| |||| |||
Sbjct 1311 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTC-CAGTCCCAA 1253
Query 121 T-GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTC 179
| ||| ||||||||||||||||||||| ||| |||||||||||||||||||| |||||||
Sbjct 1252 TTGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTACCTC 1193
Query 180 ACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCT 239
||||||||||||||| ||| ||| || || ||| | || ||
Sbjct 1192 ACCAACTAGCTAATCAGACGCGGGCCGCTCCAATGGCGATA------AA--------TCT 1147
Query 240 TTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299
||| |||| ||| | || |||||||||| |||||| ||| | || || |
Sbjct 1146 TTCCCCCGAAGGGCACATACGGTATTAGCTCAAGTTTCCCTGAGTTGTTCCGTACCAAAG 1087
Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335
|||| |||| | | ||||||||||||||||| ||
Sbjct 1086 GGCACGTTCCCACGTGTTACTCACCCGTCCGCCACT 1051
Score = 217 bits (240), Expect = 3e-54
Identities = 210/271 (77%), Gaps = 14/271 (5%)
Strand=Plus/Minus
Query 65 TCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 124
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 908 TCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTG 849
Query 125 ACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAA 184
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 848 GCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCATTACCTCACCAA 789
Query 185 CTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTC 244
|||||||||| ||| ||| |||| ||| | || ||||| |
Sbjct 788 CTAGCTAATCAGACGCGGGCCGATCTTTCGGCGATA------AA--------TCTTTCCC 743
Query 245 CCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAG 304
| |||| | ||| |||||||||| |||||| ||| | || || | ||| |
Sbjct 742 CGTTAGGGCTTATCCGGTATTAGCTGAAGTTTCCCTCAGTTGTTCCGAACCAAAAGGTAC 683
Query 305 ATTCCTAGGCATTACTCACCCGTCCGCCGCT 335
|||| | | ||||||||||||| ||||||
Sbjct 682 GTTCCCACGTGTTACTCACCCGTCTGCCGCT 652
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071838567520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |