Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq9910 327 2e-87 seq13554 302 1e-79 seq6860 248 2e-63 >seq9910 Length=308115 Score = 327 bits (362), Expect = 2e-87 Identities = 286/352 (81%), Gaps = 3/352 (1%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| |||||| ||||| | | |||||||||||| |||||||||||||||||||| Sbjct 260917 TTTACAACCCGAAGGCCTTCATCCTG-CACGCGGCATTG-CTGGATCAGGCTTTCGCCCA 260974 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 260975 TTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 261034 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||| || |||||||||||||| ||| ||||||||||| ||||||| ||||||||| Sbjct 261035 GTGGCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTAGGTGAGCTTTTACCTCAC 261094 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 | ||||||||||| || | ||| || || ||| ||| |||||| ||||| ||||| Sbjct 261095 CTACTAGCTAATCAGATATCGGCCGCTCCATTAACGCTAGGTCCGAAGATCCCCAGCTTT 261154 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301 | ||| ||| |||||||||||||||| |||| ||||||||||| || | Sbjct 261155 CCCCCTCAGGGCGTATGCGGTATTAGCTAATCTTTCGACTAGTTATCCCCCATTATTGGA 261214 Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC-TCAAGAGAAGCAAGCT 352 | |||| | ||||||||||||| |||| ||| || || |||||||| Sbjct 261215 TACGTTCCGATATATTACTCACCCGTTCGCCACTCGCCACCAGGAGCAAGCT 261266 >seq13554 Length=1007 Score = 302 bits (334), Expect = 1e-79 Identities = 271/337 (80%), Gaps = 20/337 (6%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || ||| ||||| | ||| |||||||||| ||||||||||||||| ||||| Sbjct 69 CTTTACAACCCTAAGGCCTTCAT-CACTCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 126 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 186 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 187 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCCCA 246 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGA-AGGTCCCCTGCT 239 ||||||||||||| || ||| || | ||||| | | || Sbjct 247 CCAACTAGCTAAT--AACGCGGGCCAAT---------CCTTCCCCGATAAAT------CT 289 Query 240 TTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299 ||| |||||||| |||||||||||||| | |||||| | ||| || || | Sbjct 290 TTCCCCCGTAGGGCGTATGCGGTATTAATTCCAGTTTCCCGGAGCTATTCCGCAGGAAAG 349 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 || | |||| | || ||||||||||||| ||| ||| Sbjct 350 GGTATGTTCCCACGCGTTACTCACCCGTCTGCCACTC 386 >seq6860 Length=6169 Score = 248 bits (274), Expect = 2e-63 Identities = 259/336 (77%), Gaps = 18/336 (5%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || | | ||||| | ||| |||||||||| |||||||||||| || | ||| Sbjct 1369 CTTTACAACCCTAGGGCCTTCAT-CACTCACGCGGCAT-GGCTGGATCAGGGTTGCCCCC 1312 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||| ||| ||||||| |||| ||| Sbjct 1311 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTC-CAGTCCCAA 1253 Query 121 T-GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTC 179 | ||| ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||| Sbjct 1252 TTGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTACCTC 1193 Query 180 ACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCT 239 ||||||||||||||| ||| ||| || || ||| | || || Sbjct 1192 ACCAACTAGCTAATCAGACGCGGGCCGCTCCAATGGCGATA------AA--------TCT 1147 Query 240 TTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299 ||| |||| ||| | || |||||||||| |||||| ||| | || || | Sbjct 1146 TTCCCCCGAAGGGCACATACGGTATTAGCTCAAGTTTCCCTGAGTTGTTCCGTACCAAAG 1087 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 |||| |||| | | ||||||||||||||||| || Sbjct 1086 GGCACGTTCCCACGTGTTACTCACCCGTCCGCCACT 1051 Score = 217 bits (240), Expect = 3e-54 Identities = 210/271 (77%), Gaps = 14/271 (5%) Strand=Plus/Minus Query 65 TCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 124 |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 908 TCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTG 849 Query 125 ACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAA 184 ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 848 GCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCATTACCTCACCAA 789 Query 185 CTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTC 244 |||||||||| ||| ||| |||| ||| | || ||||| | Sbjct 788 CTAGCTAATCAGACGCGGGCCGATCTTTCGGCGATA------AA--------TCTTTCCC 743 Query 245 CCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAG 304 | |||| | ||| |||||||||| |||||| ||| | || || | ||| | Sbjct 742 CGTTAGGGCTTATCCGGTATTAGCTGAAGTTTCCCTCAGTTGTTCCGAACCAAAAGGTAC 683 Query 305 ATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 |||| | | ||||||||||||| |||||| Sbjct 682 GTTCCCACGTGTTACTCACCCGTCTGCCGCT 652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071838567520