Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01001182.1
Length=261
Score E
Sequences producing significant alignments: (Bits) Value
seq11632 122 1e-25
seq9945 118 2e-24
seq7278 116 5e-24
seq9020 98.7 1e-18
seq9778 87.8 3e-15
seq10047 86.0 9e-15
seq3353 86.0 9e-15
seq10086 82.4 1e-13
>seq11632
Length=58992
Score = 122 bits (134), Expect = 1e-25
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 54 CAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATC 113
|||| | || | || ||||| ||||| |||||||||||||| || ||||||||||| ||
Sbjct 10524 CAGGACGGGCGAGGGTGCTTCCTCCAGCACCTTCTGGTGACGGCGCTGCAGCGAGCAGTC 10465
Query 114 GCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTG 173
||| |||||||| |||||||||| ||| | ||||||| | || || | ||| | |||
Sbjct 10464 GCGTTCGCCCAGATGGATGGCGTTGCCATTGCCGTCGCCGAACACCTGGATTTCGATGTG 10405
Query 174 ACGTGGGTTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGC 233
|| |||||| || || || || | ||||| | | || ||||||| ||| |||
Sbjct 10404 GCGCGGGTTGCCGAGATATTTCTCGATATAGACGGTGGCGTCGCCGAACGCGGCCTTCGC 10345
Query 234 TTCGGAGCGAGTCTGCT 250
||| || | | |||||
Sbjct 10344 TTCCGAACCGGCCTGCT 10328
>seq9945
Length=90163
Score = 118 bits (130), Expect = 2e-24
Identities = 125/165 (76%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 57 GCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCG 116
||| || ||||||||||| || | ||||||||||| || || |||| ||||| |||||
Sbjct 34695 GCCGGGAGCCGGCGCTTCCTCGATGACCTTCTGGTGGCGGCGCTGCATGGAGCAGTCGCG 34636
Query 117 GTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACG 176
|||||||||| || ||| | || ||| ||||| ||| | || | |||||| || ||
Sbjct 34635 CTCGCCCAGGTAGACGGCATTGCGATGGTTGTCGGCCAGGATCTGGATTTCCACATGGCG 34576
Query 177 TGGGTTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAA 221
||||| |||| |||| |||| |||||| ||| ||||||||
Sbjct 34575 CGGGTTCTGCAGGAACTTCTCCATGTAGACGGCCGGATTGCCGAA 34531
>seq7278
Length=293576
Score = 116 bits (128), Expect = 5e-24
Identities = 132/175 (75%), Gaps = 4/175 (2%)
Strand=Plus/Minus
Query 70 GCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGGTGG 129
||||||||||| |||||||||||||| || |||| |||||||||||| || || |||||
Sbjct 229812 GCTTCTTCCAGCACCTTCTGGTGACGGCGCTGCAACGAGCAATCGCGCTCTCCAAGGTGA 229753
Query 130 ATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGGTTGGTCAGG 189
| ||| | ||| | ||| ||| | || |||||||| | || || || ||| |||
Sbjct 229752 ACGGCATTGCCTTCGCCATCGCCGAAAACCTGCACTTCGATATGGCGCGGTTTGCCGAGG 229693
Query 190 TACTTTTCCAGGTAGAC--CATCGGGTTGCCGAACCAGGCGCCCGCTTCGGAGCG 242
|| ||||||| |||||| | || ||||||||| || |||||||||| ||
Sbjct 229692 TATTTTTCCATGTAGACGGCGTC--GTTGCCGAAGGCTGCCGCCGCTTCGGAACG 229640
>seq9020
Length=152994
Score = 98.7 bits (108), Expect = 1e-18
Identities = 135/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 54 CAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATC 113
|||| |||| | || ||||||||||| |||||||||||||| || ||||||||||| ||
Sbjct 128625 CAGGGCCGGCGAGGGGGCTTCTTCCAGAACCTTCTGGTGACGGCGCTGCAGCGAGCAGTC 128566
Query 114 GCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTG 173
||| ||||||||||| ||| ||| |||| ||||| | || |||| || | ||
Sbjct 128565 GCGTTCGCCCAGGTGCGCCACGTTGCCGTGGCTGTCGGCGATGACCTGCAGCTCGATATG 128506
Query 174 ACGTGGGTTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGC 233
|| || || || || |||| |||||| | || |||||| ||||| ||
Sbjct 128505 GCGCGGCTTCTGGAGATAGCGCTCCATATAGACCGTGTCGTCGCCGAAGGCGGCGCGAGC 128446
Query 234 TTCGGAGCG 242
|||| |||
Sbjct 128445 CTCGGCGCG 128437
>seq9778
Length=38677
Score = 87.8 bits (96), Expect = 3e-15
Identities = 108/148 (73%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 50 CGTCCAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGC 109
|||||| ||| || |||||||| || || | ||||||||||| || || ||||||||||
Sbjct 22719 CGTCCATGCCGGGGGCCGGCGCCTCCTCGATCACCTTCTGGTGGCGGCGCTGCAGCGAGC 22660
Query 110 AATCGCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCA 169
| ||||| ||| |||||| | || ||| || | ||||| | || ||||| || |
Sbjct 22659 AGTCGCGCTCGAACAGGTGCACCGCCCCGCCATGCCGGTCGGCGAACACCTGCACCTCGA 22600
Query 170 CGTGACGTGGGTTGGTCAGGTACTTTTC 197
||| || || ||| | |||||| ||
Sbjct 22599 TGTGGCGCGGCCGGGTGACGTACTTCTC 22572
>seq10047
Length=32463
Score = 86.0 bits (94), Expect = 9e-15
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 49 TCGTCCAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAG 108
||||||| ||| || ||||| || || || | ||||||||||| || || |||||||||
Sbjct 18660 TCGTCCATGCCGGGGGCCGGGGCCTCCTCGATGACCTTCTGGTGGCGGCGCTGCAGCGAG 18719
Query 109 CAATCGCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCC 168
|| ||||| || ||| |||| | | | || ||| ||||| | || ||||| ||
Sbjct 18720 CAGTCGCGTTCAAACAGATGGACGACATTTCCATGGGCGTCGCCGAACACCTGCACCTCG 18779
Query 169 ACGTGACGTGGGTTGGTCAGGTACTTTTCCAG 200
| ||| || || ||| | |||||| |||||
Sbjct 18780 ATGTGGCGCGGACGGGTGACGTACTTCTCCAG 18811
>seq3353
Length=40798
Score = 86.0 bits (94), Expect = 9e-15
Identities = 133/190 (70%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 48 TTCGTCCAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGA 107
||| |||| |||||| || |||||||| || | ||||||||||| || || || |||||
Sbjct 33101 TTCATCCATGCCCGGCGCAGGCGCTTCCTCTATCACCTTCTGGTGGCGGCGCTGGAGCGA 33160
Query 108 GCAATCGCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTC 167
||| ||||| ||| ||| |||| | | || || || |||| | || ||||| ||
Sbjct 33161 GCAGTCGCGCTCGAACAGATGGACGACATGACCATGTTTGTCGCCGAACACCTGCACCTC 33220
Query 168 CACGTGACGTGGGTTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGC 227
| || || |||||||| | | || ||||| ||| | ||||||||| | ||
Sbjct 33221 GATATGGCGCGGGTTGGTGATCCATTTCTCCAGCAGCACCTGCTCGTTGCCGAAGCTGGA 33280
Query 228 GCCCGCTTCG 237
|||| |||
Sbjct 33281 CGCCGCCTCG 33290
>seq10086
Length=51439
Score = 82.4 bits (90), Expect = 1e-13
Identities = 81/105 (77%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 50 CGTCCAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGC 109
|||| ||| | || | |||||||||||||| ||||||||||| || || |||||||| |
Sbjct 26020 CGTCGAGGGCGGGGGAGGGCGCTTCTTCCAGCACCTTCTGGTGGCGGCGCTGCAGCGAAC 25961
Query 110 AATCGCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACA 154
| ||||| |||||||| || | ||| ||| || ||||| ||
Sbjct 25960 AGTCGCGCTCGCCCAGATGCACCACGTTGCCGAAGCTGTCGGCCA 25916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 735892629330
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |