Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01001182.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value seq11632 122 1e-25 seq9945 118 2e-24 seq7278 116 5e-24 seq9020 98.7 1e-18 seq9778 87.8 3e-15 seq10047 86.0 9e-15 seq3353 86.0 9e-15 seq10086 82.4 1e-13 >seq11632 Length=58992 Score = 122 bits (134), Expect = 1e-25 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 54 CAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATC 113 |||| | || | || ||||| ||||| |||||||||||||| || ||||||||||| || Sbjct 10524 CAGGACGGGCGAGGGTGCTTCCTCCAGCACCTTCTGGTGACGGCGCTGCAGCGAGCAGTC 10465 Query 114 GCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTG 173 ||| |||||||| |||||||||| ||| | ||||||| | || || | ||| | ||| Sbjct 10464 GCGTTCGCCCAGATGGATGGCGTTGCCATTGCCGTCGCCGAACACCTGGATTTCGATGTG 10405 Query 174 ACGTGGGTTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGC 233 || |||||| || || || || | ||||| | | || ||||||| ||| ||| Sbjct 10404 GCGCGGGTTGCCGAGATATTTCTCGATATAGACGGTGGCGTCGCCGAACGCGGCCTTCGC 10345 Query 234 TTCGGAGCGAGTCTGCT 250 ||| || | | ||||| Sbjct 10344 TTCCGAACCGGCCTGCT 10328 >seq9945 Length=90163 Score = 118 bits (130), Expect = 2e-24 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 57 GCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCG 116 ||| || ||||||||||| || | ||||||||||| || || |||| ||||| ||||| Sbjct 34695 GCCGGGAGCCGGCGCTTCCTCGATGACCTTCTGGTGGCGGCGCTGCATGGAGCAGTCGCG 34636 Query 117 GTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACG 176 |||||||||| || ||| | || ||| ||||| ||| | || | |||||| || || Sbjct 34635 CTCGCCCAGGTAGACGGCATTGCGATGGTTGTCGGCCAGGATCTGGATTTCCACATGGCG 34576 Query 177 TGGGTTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAA 221 ||||| |||| |||| |||| |||||| ||| |||||||| Sbjct 34575 CGGGTTCTGCAGGAACTTCTCCATGTAGACGGCCGGATTGCCGAA 34531 >seq7278 Length=293576 Score = 116 bits (128), Expect = 5e-24 Identities = 132/175 (75%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 70 GCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGGTGG 129 ||||||||||| |||||||||||||| || |||| |||||||||||| || || ||||| Sbjct 229812 GCTTCTTCCAGCACCTTCTGGTGACGGCGCTGCAACGAGCAATCGCGCTCTCCAAGGTGA 229753 Query 130 ATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGGTTGGTCAGG 189 | ||| | ||| | ||| ||| | || |||||||| | || || || ||| ||| Sbjct 229752 ACGGCATTGCCTTCGCCATCGCCGAAAACCTGCACTTCGATATGGCGCGGTTTGCCGAGG 229693 Query 190 TACTTTTCCAGGTAGAC--CATCGGGTTGCCGAACCAGGCGCCCGCTTCGGAGCG 242 || ||||||| |||||| | || ||||||||| || |||||||||| || Sbjct 229692 TATTTTTCCATGTAGACGGCGTC--GTTGCCGAAGGCTGCCGCCGCTTCGGAACG 229640 >seq9020 Length=152994 Score = 98.7 bits (108), Expect = 1e-18 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 54 CAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATC 113 |||| |||| | || ||||||||||| |||||||||||||| || ||||||||||| || Sbjct 128625 CAGGGCCGGCGAGGGGGCTTCTTCCAGAACCTTCTGGTGACGGCGCTGCAGCGAGCAGTC 128566 Query 114 GCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTG 173 ||| ||||||||||| ||| ||| |||| ||||| | || |||| || | || Sbjct 128565 GCGTTCGCCCAGGTGCGCCACGTTGCCGTGGCTGTCGGCGATGACCTGCAGCTCGATATG 128506 Query 174 ACGTGGGTTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGC 233 || || || || || |||| |||||| | || |||||| ||||| || Sbjct 128505 GCGCGGCTTCTGGAGATAGCGCTCCATATAGACCGTGTCGTCGCCGAAGGCGGCGCGAGC 128446 Query 234 TTCGGAGCG 242 |||| ||| Sbjct 128445 CTCGGCGCG 128437 >seq9778 Length=38677 Score = 87.8 bits (96), Expect = 3e-15 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 50 CGTCCAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGC 109 |||||| ||| || |||||||| || || | ||||||||||| || || |||||||||| Sbjct 22719 CGTCCATGCCGGGGGCCGGCGCCTCCTCGATCACCTTCTGGTGGCGGCGCTGCAGCGAGC 22660 Query 110 AATCGCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCA 169 | ||||| ||| |||||| | || ||| || | ||||| | || ||||| || | Sbjct 22659 AGTCGCGCTCGAACAGGTGCACCGCCCCGCCATGCCGGTCGGCGAACACCTGCACCTCGA 22600 Query 170 CGTGACGTGGGTTGGTCAGGTACTTTTC 197 ||| || || ||| | |||||| || Sbjct 22599 TGTGGCGCGGCCGGGTGACGTACTTCTC 22572 >seq10047 Length=32463 Score = 86.0 bits (94), Expect = 9e-15 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 49 TCGTCCAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAG 108 ||||||| ||| || ||||| || || || | ||||||||||| || || ||||||||| Sbjct 18660 TCGTCCATGCCGGGGGCCGGGGCCTCCTCGATGACCTTCTGGTGGCGGCGCTGCAGCGAG 18719 Query 109 CAATCGCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCC 168 || ||||| || ||| |||| | | | || ||| ||||| | || ||||| || Sbjct 18720 CAGTCGCGTTCAAACAGATGGACGACATTTCCATGGGCGTCGCCGAACACCTGCACCTCG 18779 Query 169 ACGTGACGTGGGTTGGTCAGGTACTTTTCCAG 200 | ||| || || ||| | |||||| ||||| Sbjct 18780 ATGTGGCGCGGACGGGTGACGTACTTCTCCAG 18811 >seq3353 Length=40798 Score = 86.0 bits (94), Expect = 9e-15 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 48 TTCGTCCAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGA 107 ||| |||| |||||| || |||||||| || | ||||||||||| || || || ||||| Sbjct 33101 TTCATCCATGCCCGGCGCAGGCGCTTCCTCTATCACCTTCTGGTGGCGGCGCTGGAGCGA 33160 Query 108 GCAATCGCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTC 167 ||| ||||| ||| ||| |||| | | || || || |||| | || ||||| || Sbjct 33161 GCAGTCGCGCTCGAACAGATGGACGACATGACCATGTTTGTCGCCGAACACCTGCACCTC 33220 Query 168 CACGTGACGTGGGTTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGC 227 | || || |||||||| | | || ||||| ||| | ||||||||| | || Sbjct 33221 GATATGGCGCGGGTTGGTGATCCATTTCTCCAGCAGCACCTGCTCGTTGCCGAAGCTGGA 33280 Query 228 GCCCGCTTCG 237 |||| ||| Sbjct 33281 CGCCGCCTCG 33290 >seq10086 Length=51439 Score = 82.4 bits (90), Expect = 1e-13 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 50 CGTCCAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGC 109 |||| ||| | || | |||||||||||||| ||||||||||| || || |||||||| | Sbjct 26020 CGTCGAGGGCGGGGGAGGGCGCTTCTTCCAGCACCTTCTGGTGGCGGCGCTGCAGCGAAC 25961 Query 110 AATCGCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACA 154 | ||||| |||||||| || | ||| ||| || ||||| || Sbjct 25960 AGTCGCGCTCGCCCAGATGCACCACGTTGCCGAAGCTGTCGGCCA 25916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 735892629330