Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01001286.1 Length=411 Score E Sequences producing significant alignments: (Bits) Value seq10398 125 2e-26 >seq10398 Length=50767 Score = 125 bits (138), Expect = 2e-26 Identities = 205/293 (70%), Gaps = 2/293 (1%) Strand=Plus/Minus Query 88 ACCAGGATGTCTTCCATGATCAGGTATTGCAGGTCGGAGCCAAAGAACATGTCCAGCGCG 147 |||| || ||||||| |||| |||| || || | || ||||||| | || || Sbjct 25294 ACCAAAATATCTTCCAACATCAAATATTCCAAATCACATCCGTAGAACATATTCAAGGCA 25235 Query 148 TCTTTCGGCGAGCAGATCATCGCTTCGCCACGGCGGTTGAGCGAGGTGTTCAGGGACACG 207 || |||| || ||||||| || ||||||||||| ||||| || ||||| ||| Sbjct 25234 TCGGTCGGGCTACAAATCATCGGCTCACCACGGCGGTTAAGCGATGTATTCAGCACCACA 25175 Query 208 CCGTTGCCG-GTCAGCACTTCCAGCTCTTTCATCATGTCGTAGTAGCGCGGGTTGTATTC 266 | |||||| || || ||| | | | || | || ||||| |||||||| || Sbjct 25174 GCATTGCCGCGTAAGGT-TTCTAAATGCTCAATGAGCTCATAGTAACGCGGGTTAGTCTC 25116 Query 267 GCGCTTGAGCACCTGGGCGCGGGAGGTGCCATCTTCATGGACCACTTCCGGCACGCGGGT 326 || ||| ||| || || || | |||||||||||||| ||||||||||| | || | Sbjct 25115 ACGTGTGACCACTTGCGCACGCGCAGTGCCATCTTCATGCACCACTTCCGGGATACGTGA 25056 Query 327 CTTCCACTCTTCCGACACTTCAAAGGTGAAGGTCATGAACGGCGCCGGGTGAT 379 ||||| | || | ||| |||||||| |||||||| |||| ||||| |||| Sbjct 25055 TTTCCAGTGCTCGGCCACATCAAAGGTAAAGGTCATATACGGTGCCGGATGAT 25003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1212617364448