Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq9910 432 9e-119
seq7320 432 9e-119
seq6993 426 4e-117
seq5225 398 2e-108
seq8549 322 1e-85
seq8424 311 2e-82
seq11968 284 3e-74
seq10654 163 7e-38
>seq9910
Length=308115
Score = 432 bits (478), Expect = 9e-119
Identities = 353/415 (85%), Gaps = 14/415 (3%)
Strand=Plus/Plus
Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63
|| |||||||| |||| |||||| |||| |||| |||||||||||| ||||||||
Sbjct 258371 CCTATCCACAGCTCAT-CCGCTAG-TTTTGCAACACTAGTCGGTTCGGACCTCCAGTACC 258428
Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123
| ||||| ||||| || |||| |||| ||||||||| | ||||| |||||||| |
Sbjct 258429 T-GTTACGGCACCTT-CATCCTGGCCAT-GGATAGATCACTTGGTTT-CGGGTCTACA-C 258483
Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183
||||||||| ||||||||| | |||||| ||| | ||||| |||||||||||||||||
Sbjct 258484 CCAGCGACTGGACGCCCTATTCGGACTCGATTT-CTCTACGGCTCCCCTATTCGGTTAAC 258542
Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 258543 CTT-GCCACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCTT--- 258598
Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303
| ||||||| ||| ||||| |||| |||||||||||||||||||||||||||| ||||
Sbjct 258599 -GCGGGCTCCTACTTTTTGTAAGCATGCGGTTTCAGGATCTATTTCACTCCCCTC-CCGG 258656
Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363
||||||||||||||||||||||||||||| |||||||||||||| | | |||||||||
Sbjct 258657 GGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATGATGAGTATTTAG 258716
Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418
||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||
Sbjct 258717 CCTTGGAGGATGGTCCCCCCATATTCAGACAGGGTTTCTCGTGCCCCGCCCTACT 258771
>seq7320
Length=4144
Score = 432 bits (478), Expect = 9e-119
Identities = 353/415 (85%), Gaps = 13/415 (3%)
Strand=Plus/Minus
Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63
|| |||||||| |||| || || ||||||||| | || ||||||| ||||||||
Sbjct 2527 CCTATCCACAGCTCATCCCC--AAATTTTTCAACATTTGTGGGTTCGGACCTCCAGTACC 2470
Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123
| ||||| ||||| || |||| |||| ||||||||| | ||||| |||||||| |
Sbjct 2469 T-GTTACGGCACCTT-CATCCTGGCCAT-GGATAGATCACTTGGTTT-CGGGTCTACA-C 2415
Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183
||||| ||||||||||||| | |||||||||| ||||||||||||||||| ||||||||
Sbjct 2414 CCAGCAACTAGACGCCCTATTCGGACTCGCTTT-CGCTACGCCTCCCCTAT-CGGTTAAG 2357
Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243
||| || |||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 2356 CTT-GCTACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCC--CTT 2300
Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303
||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 2299 GCGAGGCTCCCACTGTTTGTATGCATACGGTTTCAGGATCTATTTCACTCCCCTC-CCGG 2241
Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363
||||||||||||||||||||||||||||| |||||||||||||| | | |||||||||
Sbjct 2240 GGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATTACGAGTATTTAG 2181
Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418
|||||||||||||||||||||| |||||||| ||||||||||| ||| ||||||
Sbjct 2180 CCTTGGAGGATGGTCCCCCCATGTTCAGACAGGGTTTCTCGTGCCCCGCCCTACT 2126
>seq6993
Length=5165
Score = 426 bits (472), Expect = 4e-117
Identities = 352/415 (85%), Gaps = 12/415 (3%)
Strand=Plus/Minus
Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63
|| |||||||| |||| || ||||||||| ||||| |||| |||||||||||||||| |
Sbjct 1461 CCTATCCACAGCTCATCCC-CTAACTTTT-CAACGTTAGTGGGTTCGGTCCTCCAGTACG 1404
Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123
| |||||| ||||| ||||||| |||| ||||||||| | ||||| |||||||| |
Sbjct 1403 T-GTTACCGCACCTT-CAACCTGGCCAT-GGATAGATCATCTGGTTT-CGGGTCTACA-C 1349
Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183
||||||||| |||||||| | |||||| ||| | |||||||| |||||||||||||||
Sbjct 1348 CCAGCGACTGAACGCCCTATTCGGACTCGATTT-CTCTACGCCTTCCCTATTCGGTTAAG 1290
Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243
|| || |||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1289 ATT-GCAACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCC--CTT 1233
Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303
|||||| |||| ||||| ||| |||||||||||||||||||||||||||| |||||
Sbjct 1232 TCGAGGCTCCTACTGTTTGTATGCACACGGTTTCAGGATCTATTTCACTCCCCT-TCCGG 1174
Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363
||||||||||||||||||||||||||||| |||||||||||||| | | |||||||||
Sbjct 1173 GGTTCTTTTCGCCTTTCCCTCACGGTACTTGTTCACTATCGGTCGATTACGAGTATTTAG 1114
Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418
|||||||||||||||||||||| |||||||| |||| |||| ||| ||||||
Sbjct 1113 CCTTGGAGGATGGTCCCCCCATCTTCAGACAGGATTTCACGTGTCCCGCCCTACT 1059
>seq5225
Length=798
Score = 398 bits (440), Expect = 2e-108
Identities = 351/426 (82%), Gaps = 24/426 (6%)
Strand=Plus/Minus
Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63
|| |||||||| |||| |||||| |||| |||| |||||||||||| ||||||||
Sbjct 587 CCTATCCACAGCTCAT-CCGCTAG-TTTTGCAACACTAGTCGGTTCGGACCTCCAGTACC 530
Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123
| ||||| ||||| || |||| |||| ||||||||| | ||||| |||||||| |
Sbjct 529 T-GTTACGGCACCTT-CATCCTGGCCAT-GGATAGATCACTTGGTTT-CGGGTCTACA-C 475
Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCT---------TTTCGCTACGCCTCCCCTAT 174
||||||||| ||||||||| | |||||| | |||| |||||||| ||||||
Sbjct 474 CCAGCGACTGGACGCCCTATTCGGACTCGTTCGGACTCGTTTTCTCTACGCCTTCCCTAT 415
Query 175 TCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTC 234
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 414 TCGGTTAAGCTT-GCCACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCCGTC 356
Query 235 ACCCAA--CAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACT 292
|||| | | |||||| |||| ||||| |||| ||||||||||||||||||||||
Sbjct 355 ACCCGTTTCCA----GGCTCCGACTGTTTGTATGCATGCGGTTTCAGGATCTATTTCACT 300
Query 293 CCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCA 352
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 299 CCCCTC-CCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATTA 241
Query 353 GTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGT 412
||||||||||||||||||||||||||||||| |||||||| |||| |||| |||
Sbjct 240 CGAGTATTTAGCCTTGGAGGATGGTCCCCCCATCTTCAGACAGGATTTCACGTGTCCCGC 181
Query 413 CCTACT 418
||||||
Sbjct 180 CCTACT 175
>seq8549
Length=2370
Score = 322 bits (356), Expect = 1e-85
Identities = 330/414 (80%), Gaps = 14/414 (3%)
Strand=Plus/Plus
Query 10 CACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTA 69
|||| |||| ||| |||||||| ||||| || ||||||||| |||||||| || ||||
Sbjct 825 CACAACTCAT-CCGGTAACTTTT-CAACGTTAATCGGTTCGGACCTCCAGTGCGT-GTTA 881
Query 70 CCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCC-CAGC 128
|| ||||| || |||| ||| | ||||||||| ||||| |||||||| | | ||
Sbjct 882 CCGCACCTT-CATCCTGGTCAT-GCCTAGATCGCCGGGTTT-CGGGTCTAATACATCAA- 937
Query 129 GACTA-GACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTT 186
|||| | ||||||| | ||||||||||| |||| ||||| | ||||| | ||||||||
Sbjct 938 -ACTAAGTCGCCCTATTCAGACTCGCTTT-CGCTGCGCCTACACCTATCGGCTTAAGCTT 995
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246
|| | | |||||| | |||||||||| ||| |||||||||||||| | |||| |
Sbjct 996 -GCTTGATACATTAAGTCACAGACCCATTATGCAAGAGGTACGCAGTCACTCCACAA-GA 1053
Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306
| ||||| |||||||||| ||| | |||||||| || ||||||||||||| ||||||
Sbjct 1054 GAGCTCCTACTGCTTGTAGGCAATCCGTTTCAGGTACTGTTTCACTCCCCTCATCGGGGT 1113
Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366
|||||| ||||||||||||||||||||||| |||||||||| | ||||||||| ||
Sbjct 1114 GCTTTTCACCTTTCCCTCACGGTACTAGTTCGCTATCGGTCATGTACGAGTATTTAGGCT 1173
Query 367 TGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
|||||| |||||||||||| |||||||| | || | |||| |||| ||||||||
Sbjct 1174 TGGAGGGTGGTCCCCCCATGTTCAGACAGAATTACACGTGTTCCGCCCTACTCG 1227
>seq8424
Length=263062
Score = 311 bits (344), Expect = 2e-82
Identities = 314/394 (80%), Gaps = 12/394 (3%)
Strand=Plus/Plus
Query 29 TTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCC 88
||||||||| | ||||||||||||||||| || |||||| ||||| |||||||
Sbjct 261086 TTTTTCAACATTGAACGGTTCGGTCCTCCAGTGCGT-GTTACCGCACCTT-CAACCTGGT 261143
Query 89 CATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCC-CAGCGACTA-GACGCCCTAGTAA 146
||| | |||||||||| ||||| |||||||| | | || |||| | ||||||| | |
Sbjct 261144 CAT-GCATAGATCGCCGGGTTT-CGGGTCTAATGCATCAA--ACTATGGCGCCCTATTCA 261199
Query 147 GACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCG 205
|||||||||| |||| ||||| | |||| | |||||||| || | | ||||||
Sbjct 261200 GACTCGCTTT-CGCTGCGCCTACACCTAACGGCTTAAGCTT-GCTTGATACACTAAGTCA 261257
Query 206 CTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTAC 265
| |||||||||| ||| |||||||| |||| ||| | |||||||||||||||
Sbjct 261258 CAGACCCATTATGCAAGAGGTACGCGGTCAGGTCTCAAGGACC-CTCCCACTGCTTGTAG 261316
Query 266 GCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCA 325
|||| |||||||||| || ||||||||||||| |||||| |||||| |||||||||||
Sbjct 261317 GCATCCGGTTTCAGGTACTGTTTCACTCCCCTCATCGGGGTGCTTTTCACCTTTCCCTCA 261376
Query 326 CGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCAT 385
||||||| ||||||||||||||| | ||||||||| |||||||| ||||||||||||
Sbjct 261377 CGGTACTGGTTCACTATCGGTCATGTACGAGTATTTAGGCTTGGAGGGTGGTCCCCCCAT 261436
Query 386 ATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419
|||||||| |||||| ||||||||| |||||||
Sbjct 261437 GTTCAGACAGAGTTTCACGTGCTCCGCCCTACTC 261470
>seq11968
Length=3642
Score = 284 bits (314), Expect = 3e-74
Identities = 307/395 (78%), Gaps = 14/395 (4%)
Strand=Plus/Minus
Query 28 CTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGC 87
|||||||||| | |||||||| |||||| | || ||||||| | ||| || |||||
Sbjct 2066 CTTTTTCAACAGACACCGGTTCGGCCCTCCAATGGGT-GTTACCCCATCTT-CAGCCTGC 2009
Query 88 CCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGA-CTAGACGCCCTAGTAA 146
||| || |||||| | ||||| |||||||| | | ||| || | |||||| | |
Sbjct 2008 ACAT-GGCTAGATCACTAGGTTT-CGGGTCTAA--CGCGACGAACTGAATGCCCTATTCA 1953
Query 147 GACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCG 205
|||||||||| |||| ||||| | ||||| | |||||||| || | | |||||||
Sbjct 1952 GACTCGCTTT-CGCTGCGCCTTCGCCTATCGGCTTAAGCTT-GCTCGTCACGCTAAGTCG 1895
Query 206 CTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTAC 265
||| ||||| |||||||||||||| ||||||| | |||| | ||| |||||
Sbjct 1894 CTGGCCCATAATACAAAAGGTACGGCGTCACCCTT----GCGGGCCTCGCCTGTTTGTAA 1839
Query 266 GCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCA 325
|| | ||||||||||| ||||||||||||||| |||||| |||||| |||||||||||
Sbjct 1838 GCGTCCGGTTTCAGGAACTATTTCACTCCCCTTGTCGGGGTGCTTTTCACCTTTCCCTCA 1779
Query 326 CGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCAT 385
||||||| |||| |||||||||| | || |||| |||| |||||||| |||||||||||
Sbjct 1778 CGGTACTTGTTCGCTATCGGTCACTGAGGAGTACTTAGGCTTGGAGGGTGGTCCCCCCAC 1719
Query 386 ATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
|||||||| ||||| ||||| ||| ||||||||
Sbjct 1718 GTTCAGACAGGGTTTCACGTGCCCCGCCCTACTCG 1684
>seq10654
Length=1634
Score = 163 bits (180), Expect = 7e-38
Identities = 165/203 (81%), Gaps = 9/203 (4%)
Strand=Plus/Minus
Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63
|| |||||||| |||| |||||| |||| |||| |||||||||||| ||||||||
Sbjct 194 CCTATCCACAGCTCAT-CCGCTAG-TTTTGCAACACTAGTCGGTTCGGACCTCCAGTACC 137
Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123
| ||||| ||||| || |||| |||| ||||||||| | ||||| |||||||| |
Sbjct 136 T-GTTACGGCACCTT-CATCCTGGCCAT-GGATAGATCACTTGGTTT-CGGGTCTACA-C 82
Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183
||||||||||| ||||||| | |||||| ||| | || |||||||||||||||||||||
Sbjct 81 CCAGCGACTAGTCGCCCTATTCGGACTCGATTT-CTCTTCGCCTCCCCTATTCGGTTAAG 23
Query 184 CTTTGCCACTGAAAATAAGTCGC 206
| ||||||||||| ||||||||
Sbjct 22 C-TTGCCACTGAATGTAAGTCGC 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241413027456
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