Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq9910 432 9e-119 seq7320 432 9e-119 seq6993 426 4e-117 seq5225 398 2e-108 seq8549 322 1e-85 seq8424 311 2e-82 seq11968 284 3e-74 seq10654 163 7e-38 >seq9910 Length=308115 Score = 432 bits (478), Expect = 9e-119 Identities = 353/415 (85%), Gaps = 14/415 (3%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| |||||| |||| |||| |||||||||||| |||||||| Sbjct 258371 CCTATCCACAGCTCAT-CCGCTAG-TTTTGCAACACTAGTCGGTTCGGACCTCCAGTACC 258428 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||| ||||| || |||| |||| ||||||||| | ||||| |||||||| | Sbjct 258429 T-GTTACGGCACCTT-CATCCTGGCCAT-GGATAGATCACTTGGTTT-CGGGTCTACA-C 258483 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183 ||||||||| ||||||||| | |||||| ||| | ||||| ||||||||||||||||| Sbjct 258484 CCAGCGACTGGACGCCCTATTCGGACTCGATTT-CTCTACGGCTCCCCTATTCGGTTAAC 258542 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 ||| ||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 258543 CTT-GCCACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCTT--- 258598 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 | ||||||| ||| ||||| |||| |||||||||||||||||||||||||||| |||| Sbjct 258599 -GCGGGCTCCTACTTTTTGTAAGCATGCGGTTTCAGGATCTATTTCACTCCCCTC-CCGG 258656 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||||||||||||||||||||||||||||| |||||||||||||| | | ||||||||| Sbjct 258657 GGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATGATGAGTATTTAG 258716 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 ||||||||||||||||||||||||||||||| ||||||||||| ||| |||||| Sbjct 258717 CCTTGGAGGATGGTCCCCCCATATTCAGACAGGGTTTCTCGTGCCCCGCCCTACT 258771 >seq7320 Length=4144 Score = 432 bits (478), Expect = 9e-119 Identities = 353/415 (85%), Gaps = 13/415 (3%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| || || ||||||||| | || ||||||| |||||||| Sbjct 2527 CCTATCCACAGCTCATCCCC--AAATTTTTCAACATTTGTGGGTTCGGACCTCCAGTACC 2470 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||| ||||| || |||| |||| ||||||||| | ||||| |||||||| | Sbjct 2469 T-GTTACGGCACCTT-CATCCTGGCCAT-GGATAGATCACTTGGTTT-CGGGTCTACA-C 2415 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183 ||||| ||||||||||||| | |||||||||| ||||||||||||||||| |||||||| Sbjct 2414 CCAGCAACTAGACGCCCTATTCGGACTCGCTTT-CGCTACGCCTCCCCTAT-CGGTTAAG 2357 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 ||| || |||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 2356 CTT-GCTACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCC--CTT 2300 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 ||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 2299 GCGAGGCTCCCACTGTTTGTATGCATACGGTTTCAGGATCTATTTCACTCCCCTC-CCGG 2241 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||||||||||||||||||||||||||||| |||||||||||||| | | ||||||||| Sbjct 2240 GGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATTACGAGTATTTAG 2181 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||||||||||||||| |||||||| ||||||||||| ||| |||||| Sbjct 2180 CCTTGGAGGATGGTCCCCCCATGTTCAGACAGGGTTTCTCGTGCCCCGCCCTACT 2126 >seq6993 Length=5165 Score = 426 bits (472), Expect = 4e-117 Identities = 352/415 (85%), Gaps = 12/415 (3%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| || ||||||||| ||||| |||| |||||||||||||||| | Sbjct 1461 CCTATCCACAGCTCATCCC-CTAACTTTT-CAACGTTAGTGGGTTCGGTCCTCCAGTACG 1404 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | |||||| ||||| ||||||| |||| ||||||||| | ||||| |||||||| | Sbjct 1403 T-GTTACCGCACCTT-CAACCTGGCCAT-GGATAGATCATCTGGTTT-CGGGTCTACA-C 1349 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183 ||||||||| |||||||| | |||||| ||| | |||||||| ||||||||||||||| Sbjct 1348 CCAGCGACTGAACGCCCTATTCGGACTCGATTT-CTCTACGCCTTCCCTATTCGGTTAAG 1290 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 || || |||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 1289 ATT-GCAACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCC--CTT 1233 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 |||||| |||| ||||| ||| |||||||||||||||||||||||||||| ||||| Sbjct 1232 TCGAGGCTCCTACTGTTTGTATGCACACGGTTTCAGGATCTATTTCACTCCCCT-TCCGG 1174 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||||||||||||||||||||||||||||| |||||||||||||| | | ||||||||| Sbjct 1173 GGTTCTTTTCGCCTTTCCCTCACGGTACTTGTTCACTATCGGTCGATTACGAGTATTTAG 1114 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||||||||||||||| |||||||| |||| |||| ||| |||||| Sbjct 1113 CCTTGGAGGATGGTCCCCCCATCTTCAGACAGGATTTCACGTGTCCCGCCCTACT 1059 >seq5225 Length=798 Score = 398 bits (440), Expect = 2e-108 Identities = 351/426 (82%), Gaps = 24/426 (6%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| |||||| |||| |||| |||||||||||| |||||||| Sbjct 587 CCTATCCACAGCTCAT-CCGCTAG-TTTTGCAACACTAGTCGGTTCGGACCTCCAGTACC 530 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||| ||||| || |||| |||| ||||||||| | ||||| |||||||| | Sbjct 529 T-GTTACGGCACCTT-CATCCTGGCCAT-GGATAGATCACTTGGTTT-CGGGTCTACA-C 475 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCT---------TTTCGCTACGCCTCCCCTAT 174 ||||||||| ||||||||| | |||||| | |||| |||||||| |||||| Sbjct 474 CCAGCGACTGGACGCCCTATTCGGACTCGTTCGGACTCGTTTTCTCTACGCCTTCCCTAT 415 Query 175 TCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTC 234 |||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 414 TCGGTTAAGCTT-GCCACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCCGTC 356 Query 235 ACCCAA--CAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACT 292 |||| | | |||||| |||| ||||| |||| |||||||||||||||||||||| Sbjct 355 ACCCGTTTCCA----GGCTCCGACTGTTTGTATGCATGCGGTTTCAGGATCTATTTCACT 300 Query 293 CCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCA 352 |||||| ||||||||||||||||||||||||||||||||| |||||||||||||| | | Sbjct 299 CCCCTC-CCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATTA 241 Query 353 GTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGT 412 ||||||||||||||||||||||||||||||| |||||||| |||| |||| ||| Sbjct 240 CGAGTATTTAGCCTTGGAGGATGGTCCCCCCATCTTCAGACAGGATTTCACGTGTCCCGC 181 Query 413 CCTACT 418 |||||| Sbjct 180 CCTACT 175 >seq8549 Length=2370 Score = 322 bits (356), Expect = 1e-85 Identities = 330/414 (80%), Gaps = 14/414 (3%) Strand=Plus/Plus Query 10 CACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTA 69 |||| |||| ||| |||||||| ||||| || ||||||||| |||||||| || |||| Sbjct 825 CACAACTCAT-CCGGTAACTTTT-CAACGTTAATCGGTTCGGACCTCCAGTGCGT-GTTA 881 Query 70 CCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCC-CAGC 128 || ||||| || |||| ||| | ||||||||| ||||| |||||||| | | || Sbjct 882 CCGCACCTT-CATCCTGGTCAT-GCCTAGATCGCCGGGTTT-CGGGTCTAATACATCAA- 937 Query 129 GACTA-GACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTT 186 |||| | ||||||| | ||||||||||| |||| ||||| | ||||| | |||||||| Sbjct 938 -ACTAAGTCGCCCTATTCAGACTCGCTTT-CGCTGCGCCTACACCTATCGGCTTAAGCTT 995 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 || | | |||||| | |||||||||| ||| |||||||||||||| | |||| | Sbjct 996 -GCTTGATACATTAAGTCACAGACCCATTATGCAAGAGGTACGCAGTCACTCCACAA-GA 1053 Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 | ||||| |||||||||| ||| | |||||||| || ||||||||||||| |||||| Sbjct 1054 GAGCTCCTACTGCTTGTAGGCAATCCGTTTCAGGTACTGTTTCACTCCCCTCATCGGGGT 1113 Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366 |||||| ||||||||||||||||||||||| |||||||||| | ||||||||| || Sbjct 1114 GCTTTTCACCTTTCCCTCACGGTACTAGTTCGCTATCGGTCATGTACGAGTATTTAGGCT 1173 Query 367 TGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||| |||||||||||| |||||||| | || | |||| |||| |||||||| Sbjct 1174 TGGAGGGTGGTCCCCCCATGTTCAGACAGAATTACACGTGTTCCGCCCTACTCG 1227 >seq8424 Length=263062 Score = 311 bits (344), Expect = 2e-82 Identities = 314/394 (80%), Gaps = 12/394 (3%) Strand=Plus/Plus Query 29 TTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCC 88 ||||||||| | ||||||||||||||||| || |||||| ||||| ||||||| Sbjct 261086 TTTTTCAACATTGAACGGTTCGGTCCTCCAGTGCGT-GTTACCGCACCTT-CAACCTGGT 261143 Query 89 CATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCC-CAGCGACTA-GACGCCCTAGTAA 146 ||| | |||||||||| ||||| |||||||| | | || |||| | ||||||| | | Sbjct 261144 CAT-GCATAGATCGCCGGGTTT-CGGGTCTAATGCATCAA--ACTATGGCGCCCTATTCA 261199 Query 147 GACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCG 205 |||||||||| |||| ||||| | |||| | |||||||| || | | |||||| Sbjct 261200 GACTCGCTTT-CGCTGCGCCTACACCTAACGGCTTAAGCTT-GCTTGATACACTAAGTCA 261257 Query 206 CTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTAC 265 | |||||||||| ||| |||||||| |||| ||| | ||||||||||||||| Sbjct 261258 CAGACCCATTATGCAAGAGGTACGCGGTCAGGTCTCAAGGACC-CTCCCACTGCTTGTAG 261316 Query 266 GCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCA 325 |||| |||||||||| || ||||||||||||| |||||| |||||| ||||||||||| Sbjct 261317 GCATCCGGTTTCAGGTACTGTTTCACTCCCCTCATCGGGGTGCTTTTCACCTTTCCCTCA 261376 Query 326 CGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCAT 385 ||||||| ||||||||||||||| | ||||||||| |||||||| |||||||||||| Sbjct 261377 CGGTACTGGTTCACTATCGGTCATGTACGAGTATTTAGGCTTGGAGGGTGGTCCCCCCAT 261436 Query 386 ATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 |||||||| |||||| ||||||||| ||||||| Sbjct 261437 GTTCAGACAGAGTTTCACGTGCTCCGCCCTACTC 261470 >seq11968 Length=3642 Score = 284 bits (314), Expect = 3e-74 Identities = 307/395 (78%), Gaps = 14/395 (4%) Strand=Plus/Minus Query 28 CTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGC 87 |||||||||| | |||||||| |||||| | || ||||||| | ||| || ||||| Sbjct 2066 CTTTTTCAACAGACACCGGTTCGGCCCTCCAATGGGT-GTTACCCCATCTT-CAGCCTGC 2009 Query 88 CCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGA-CTAGACGCCCTAGTAA 146 ||| || |||||| | ||||| |||||||| | | ||| || | |||||| | | Sbjct 2008 ACAT-GGCTAGATCACTAGGTTT-CGGGTCTAA--CGCGACGAACTGAATGCCCTATTCA 1953 Query 147 GACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCG 205 |||||||||| |||| ||||| | ||||| | |||||||| || | | ||||||| Sbjct 1952 GACTCGCTTT-CGCTGCGCCTTCGCCTATCGGCTTAAGCTT-GCTCGTCACGCTAAGTCG 1895 Query 206 CTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTAC 265 ||| ||||| |||||||||||||| ||||||| | |||| | ||| ||||| Sbjct 1894 CTGGCCCATAATACAAAAGGTACGGCGTCACCCTT----GCGGGCCTCGCCTGTTTGTAA 1839 Query 266 GCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCA 325 || | ||||||||||| ||||||||||||||| |||||| |||||| ||||||||||| Sbjct 1838 GCGTCCGGTTTCAGGAACTATTTCACTCCCCTTGTCGGGGTGCTTTTCACCTTTCCCTCA 1779 Query 326 CGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCAT 385 ||||||| |||| |||||||||| | || |||| |||| |||||||| ||||||||||| Sbjct 1778 CGGTACTTGTTCGCTATCGGTCACTGAGGAGTACTTAGGCTTGGAGGGTGGTCCCCCCAC 1719 Query 386 ATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||| ||||| ||||| ||| |||||||| Sbjct 1718 GTTCAGACAGGGTTTCACGTGCCCCGCCCTACTCG 1684 >seq10654 Length=1634 Score = 163 bits (180), Expect = 7e-38 Identities = 165/203 (81%), Gaps = 9/203 (4%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| |||||| |||| |||| |||||||||||| |||||||| Sbjct 194 CCTATCCACAGCTCAT-CCGCTAG-TTTTGCAACACTAGTCGGTTCGGACCTCCAGTACC 137 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||| ||||| || |||| |||| ||||||||| | ||||| |||||||| | Sbjct 136 T-GTTACGGCACCTT-CATCCTGGCCAT-GGATAGATCACTTGGTTT-CGGGTCTACA-C 82 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183 ||||||||||| ||||||| | |||||| ||| | || ||||||||||||||||||||| Sbjct 81 CCAGCGACTAGTCGCCCTATTCGGACTCGATTT-CTCTTCGCCTCCCCTATTCGGTTAAG 23 Query 184 CTTTGCCACTGAAAATAAGTCGC 206 | ||||||||||| |||||||| Sbjct 22 C-TTGCCACTGAATGTAAGTCGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241413027456