Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01001377.1
Length=151
Score E
Sequences producing significant alignments: (Bits) Value
seq12432 91.5 1e-16
seq6988 91.5 1e-16
seq12691 87.8 1e-15
seq8824 75.2 9e-12
seq656 73.4 3e-11
>seq12432
Length=49330
Score = 91.5 bits (100), Expect = 1e-16
Identities = 95/121 (79%), Gaps = 4/121 (3%)
Strand=Plus/Plus
Query 33 CGCGCCCAGGTCGGCACTGACAACGT-AT-TGCTTGGCCTGTCCGGCGGCGTTGACTCCT 90
|||| ||||||||| | ||| || || ||| ||||||||||||||||| || || |
Sbjct 7627 CGCGATCAGGTCGGCCAGGGCAAGGTGATCTGC--GGCCTGTCCGGCGGCGTCGATTCTT 7684
Query 91 CGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGACCAACTGACCTGCGTGTTTGTCG 150
| || | |||| ||| | ||| | |||||||||||||| |||||||||||||| ||||
Sbjct 7685 CAGTGGCGGCGGTGCTGATCCACGAAGCCATCGGCGACCAGCTGACCTGCGTGTTCGTCG 7744
Query 151 A 151
|
Sbjct 7745 A 7745
>seq6988
Length=415921
Score = 91.5 bits (100), Expect = 1e-16
Identities = 95/121 (79%), Gaps = 4/121 (3%)
Strand=Plus/Plus
Query 33 CGCGCCCAGGTCGGCACTGACAACGT-AT-TGCTTGGCCTGTCCGGCGGCGTTGACTCCT 90
|||| |||||||||| | ||| || || ||| |||||||| |||||||| ||| ||
Sbjct 270368 CGCGACCAGGTCGGCGACGGCAAGGTGATCTGC--GGCCTGTCGGGCGGCGTCGACAGCT 270425
Query 91 CGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGACCAACTGACCTGCGTGTTTGTCG 150
|||| | || | ||| | ||| |||| ||||||||||| |||||||||||||| ||||
Sbjct 270426 CGGTGGCCGCCGTCCTGATCCACGAGGCGATCGGCGACCAGCTGACCTGCGTGTTCGTCG 270485
Query 151 A 151
|
Sbjct 270486 A 270486
>seq12691
Length=877
Score = 87.8 bits (96), Expect = 1e-15
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 66 GGCCTGTCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGC 125
||||||||||||||||| || ||| |||| | |||| ||| | ||| |||| ||||||
Sbjct 250 GGCCTGTCCGGCGGCGTCGATTCCGCGGTGGCGGCGGTGCTGATCCACGAGGCGATCGGC 191
Query 126 GACCAACTGACCTGCGTGTTTGTCGA 151
||||| || ||||||||||| |||||
Sbjct 190 GACCAGCTCACCTGCGTGTTCGTCGA 165
>seq8824
Length=455128
Score = 75.2 bits (82), Expect = 9e-12
Identities = 90/120 (75%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 33 CGCGCCCAGGTCGGCACTGACAACGTATTGCTTGGC-CTGTCCGGCGGCGTTGACTCCTC 91
|||| ||||||||||| | | ||| | || || || ||||||||||| || |||||
Sbjct 211004 CGCGATCAGGTCGGCACCGGCCGCGTGCT-CTGCGCACTCTCCGGCGGCGTCGATTCCTC 211062
Query 92 GGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGACCAACTGACCTGCGTGTTTGTCGA 151
||||| ||| || | || |||| ||||||||||| ||||||||||| | |||||
Sbjct 211063 GGTTGCGGCGATCCTCATCCATGAGGCGATCGGCGACCAGCTGACCTGCGTTTACGTCGA 211122
>seq656
Length=39063
Score = 73.4 bits (80), Expect = 3e-11
Identities = 98/133 (74%), Gaps = 4/133 (3%)
Strand=Plus/Plus
Query 21 ATCGCCCAAGTGCGCGCCCAGGTCGGCACTGACAACGT-AT-TGCTTGGCCTGTCCGGCG 78
|||||| | | |||| |||||||||| || | || || ||| |||||||| ||||
Sbjct 27458 ATCGCCGAGATTCGCGAGCAGGTCGGCAATGGCCGGGTCATCTGC--GGCCTGTCGGGCG 27515
Query 79 GCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGACCAACTGACCT 138
|||| ||| | |||| | || | || | || | || ||||||||||| |||||||
Sbjct 27516 GCGTCGACAGCGCGGTGGCCGCCGTCCTCATCCATGAAGCGATCGGCGACCAGCTGACCT 27575
Query 139 GCGTGTTTGTCGA 151
||||||| |||||
Sbjct 27576 GCGTGTTCGTCGA 27588
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 383943980520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |