Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01001377.1 Length=151 Score E Sequences producing significant alignments: (Bits) Value seq12432 91.5 1e-16 seq6988 91.5 1e-16 seq12691 87.8 1e-15 seq8824 75.2 9e-12 seq656 73.4 3e-11 >seq12432 Length=49330 Score = 91.5 bits (100), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 4/121 (3%) Strand=Plus/Plus Query 33 CGCGCCCAGGTCGGCACTGACAACGT-AT-TGCTTGGCCTGTCCGGCGGCGTTGACTCCT 90 |||| ||||||||| | ||| || || ||| ||||||||||||||||| || || | Sbjct 7627 CGCGATCAGGTCGGCCAGGGCAAGGTGATCTGC--GGCCTGTCCGGCGGCGTCGATTCTT 7684 Query 91 CGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGACCAACTGACCTGCGTGTTTGTCG 150 | || | |||| ||| | ||| | |||||||||||||| |||||||||||||| |||| Sbjct 7685 CAGTGGCGGCGGTGCTGATCCACGAAGCCATCGGCGACCAGCTGACCTGCGTGTTCGTCG 7744 Query 151 A 151 | Sbjct 7745 A 7745 >seq6988 Length=415921 Score = 91.5 bits (100), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 4/121 (3%) Strand=Plus/Plus Query 33 CGCGCCCAGGTCGGCACTGACAACGT-AT-TGCTTGGCCTGTCCGGCGGCGTTGACTCCT 90 |||| |||||||||| | ||| || || ||| |||||||| |||||||| ||| || Sbjct 270368 CGCGACCAGGTCGGCGACGGCAAGGTGATCTGC--GGCCTGTCGGGCGGCGTCGACAGCT 270425 Query 91 CGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGACCAACTGACCTGCGTGTTTGTCG 150 |||| | || | ||| | ||| |||| ||||||||||| |||||||||||||| |||| Sbjct 270426 CGGTGGCCGCCGTCCTGATCCACGAGGCGATCGGCGACCAGCTGACCTGCGTGTTCGTCG 270485 Query 151 A 151 | Sbjct 270486 A 270486 >seq12691 Length=877 Score = 87.8 bits (96), Expect = 1e-15 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 66 GGCCTGTCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGC 125 ||||||||||||||||| || ||| |||| | |||| ||| | ||| |||| |||||| Sbjct 250 GGCCTGTCCGGCGGCGTCGATTCCGCGGTGGCGGCGGTGCTGATCCACGAGGCGATCGGC 191 Query 126 GACCAACTGACCTGCGTGTTTGTCGA 151 ||||| || ||||||||||| ||||| Sbjct 190 GACCAGCTCACCTGCGTGTTCGTCGA 165 >seq8824 Length=455128 Score = 75.2 bits (82), Expect = 9e-12 Identities = 90/120 (75%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 33 CGCGCCCAGGTCGGCACTGACAACGTATTGCTTGGC-CTGTCCGGCGGCGTTGACTCCTC 91 |||| ||||||||||| | | ||| | || || || ||||||||||| || ||||| Sbjct 211004 CGCGATCAGGTCGGCACCGGCCGCGTGCT-CTGCGCACTCTCCGGCGGCGTCGATTCCTC 211062 Query 92 GGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGACCAACTGACCTGCGTGTTTGTCGA 151 ||||| ||| || | || |||| ||||||||||| ||||||||||| | ||||| Sbjct 211063 GGTTGCGGCGATCCTCATCCATGAGGCGATCGGCGACCAGCTGACCTGCGTTTACGTCGA 211122 >seq656 Length=39063 Score = 73.4 bits (80), Expect = 3e-11 Identities = 98/133 (74%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 21 ATCGCCCAAGTGCGCGCCCAGGTCGGCACTGACAACGT-AT-TGCTTGGCCTGTCCGGCG 78 |||||| | | |||| |||||||||| || | || || ||| |||||||| |||| Sbjct 27458 ATCGCCGAGATTCGCGAGCAGGTCGGCAATGGCCGGGTCATCTGC--GGCCTGTCGGGCG 27515 Query 79 GCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGACCAACTGACCT 138 |||| ||| | |||| | || | || | || | || ||||||||||| ||||||| Sbjct 27516 GCGTCGACAGCGCGGTGGCCGCCGTCCTCATCCATGAAGCGATCGGCGACCAGCTGACCT 27575 Query 139 GCGTGTTTGTCGA 151 ||||||| ||||| Sbjct 27576 GCGTGTTCGTCGA 27588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 383943980520