Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01001383.1 Length=561 Score E Sequences producing significant alignments: (Bits) Value seq13848 80.6 9e-13 >seq13848 Length=30995 Score = 80.6 bits (88), Expect = 9e-13 Identities = 158/230 (69%), Gaps = 9/230 (4%) Strand=Plus/Plus Query 91 GACGAAGTTCTGCTCCGTGAGGACGGCCATCTGACTTAGATAATTTAAGGACGCCTCACC 150 ||||||||||||| |||| || |||||||||| |||| | | || | ||| || Sbjct 30168 GACGAAGTTCTGCACCGTCAGCCCGGCCATCTGCGACAGATGGCTCATGGTCTGCTCGCC 30227 Query 151 GCTGTTGTTCTGCCAGTTGGTATTGGTCATGAAACTGACGGCGGTATTAAACGCCTAGGT 210 || || | |||||||||||| ||||| | ||| |||| ||||| || |||||| |||| Sbjct 30228 GCCGTAGGACTGCCAGTTGGTGTTGGTGACGAAGCTGATCGCGGTGTTGAACGCC-AGGT 30286 Query 211 ----CCATTCCTGGCCCGGCAGGTTTTGCGGGTTCAGCGGGAGGGAGCCTTGAAATAACA 266 | | | |||| | | |||||||||||||| ||| | | || | || Sbjct 30287 GCGGCGACAGCGGGCC---GAAGCCCTGCGGGTTCAGCGGCAGGTGGTCCTGCAGGCGCA 30343 Query 267 GAATAGAGAACAGCAGCAGGAAGCCGGCGAGGTTGAATGCGAGCAAGGCC 316 | || | | ||||| | |||||||||| || || || ||| ||||| Sbjct 30344 GGATGCCGTAGAGCAGGAAGAAGCCGGCGGCGTCGACCGCCAGC-AGGCC 30392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1692545081248