Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq6860 219 8e-55 seq13554 192 1e-46 seq9910 176 9e-42 >seq6860 Length=6169 Score = 219 bits (242), Expect = 8e-55 Identities = 236/307 (77%), Gaps = 19/307 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| ||||||||| |||||||||| |||||| ||||||||||||||||||||| Sbjct 1337 GGCATGGCTGGATCAGGGTTGCCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 1278 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAAT-GTGGCCGTTCAACCTCTCAGTCCGGCTACCGA 119 |||| ||||||||||| |||||||||| ||||| | ||| |||||||| || ||||| || Sbjct 1277 GAGTTTGGGCCGTGTC-CAGTCCCAATTGTGGCTGATCATCCTCTCAGACCAGCTACTGA 1219 Query 120 TCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTC 179 |||||| ||||||| || ||| ||||||||||| |||||| | |||| ||| || Sbjct 1218 TCGTCGCCTTGGTGAGCCTTTACCTCACCAACTAGCTAATCAGACGCGGGCCGCTCCAAT 1159 Query 180 AGCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 ||||||||||||| | ||| | || || || |||||||||| Sbjct 1158 GGCGATAAATCTTT--CCCCCGAAGG--GC---------AC---ATACGGTATTAGCTCA 1115 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||| ||| |||| | || |||| ||| | ||||||||||||||||||||| Sbjct 1114 AGTTTCCCTGAGTTGTTCCGTACCAAAGGGCACGTT-CCCACGTGTTACTCACCCGTCCG 1056 Query 300 CCACTAA 306 ||||||| Sbjct 1055 CCACTAA 1049 Score = 214 bits (236), Expect = 4e-53 Identities = 209/272 (77%), Gaps = 17/272 (6%) Strand=Plus/Minus Query 33 CAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGC 92 |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 906 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGC 847 Query 93 CGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACT 152 | ||| |||||||| || ||||| |||||||| ||||||| || |||| |||||||||| Sbjct 846 TGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCATTACCTCACCAACT 787 Query 153 ACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTTTGGTCAAAGAATGATGCCAT 212 | |||||| | |||| ||| ||||||| ||||||||||||| | Sbjct 786 AGCTAATCAGACGCGGGCCGATCTTTCGGCGATAAATCTTT----------------CCC 743 Query 213 CCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAG 272 | | | |||| |||||||||| |||||| ||| |||| | ||||| | Sbjct 742 CGTTAGGGCTTATCCGGTATTAGCTGAAGTTTCCCTCAGTTGTTCCGAACCAAAAGGTAC 683 Query 273 GTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 ||| | ||||||||||||||||||| ||| || Sbjct 682 GTT-CCCACGTGTTACTCACCCGTCTGCCGCT 652 >seq13554 Length=1007 Score = 192 bits (212), Expect = 1e-46 Identities = 159/193 (82%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| || | |||||||| |||||| ||||||||||||||||||||| Sbjct 101 GGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 160 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||||||||||| ||| |||| | | ||| |||||||| || | ||| ||| Sbjct 161 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGAT 220 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| ||||||| || |||| | ||||||||| ||||| |||| ||| ||| ||| Sbjct 221 CGTCGCCTTGGTGAGCCATTACCCCACCAACTAGCTAAT--AACGCGGGCCAATCCTTCC 278 Query 181 GCGATAAATCTTT 193 |||||||||||| Sbjct 279 CCGATAAATCTTT 291 >seq9910 Length=308115 Score = 176 bits (194), Expect = 9e-42 Identities = 135/160 (84%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| |||| |||||||| ||| || ||||||||||||||||||||| Sbjct 260948 GGCATTGCTGGATCAGGCTTTCGCCCATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAG 261007 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||||||||||| ||| |||||| | || |||||||| || ||||| ||| Sbjct 261008 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCTACTGAT 261067 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 ||||| || |||| ||| ||| |||||| |||| |||||| Sbjct 261068 CGTCGCCTAGGTGAGCTTTTACCTCACCTACTAGCTAATC 261107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998249650944