Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01001449.1 Length=395 Score E Sequences producing significant alignments: (Bits) Value seq12855 217 3e-54 seq10431 168 2e-39 seq7832 91.5 3e-16 >seq12855 Length=42906 Score = 217 bits (240), Expect = 3e-54 Identities = 202/254 (80%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 15 CGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGCCTGTGGCGCGGTCT 74 |||| ||| |||||| || ||||| ||||||||||||||||| ||||| |||||||| | Sbjct 39536 CGGTCTGGTCGGGCGGTCTCTTCCCCTTCCTGTTCATCACCATCGCCTGCGGCGCGGTGT 39595 Query 75 CGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCTCGCCAGTGAGAGCC 134 | || ||||| ||||||||| || ||||||||||||||| || |||| | || ||| Sbjct 39596 CCGGCTTCCACGCGCTGATCGCCAGCGGCACCACGCCCAAGCTGATCGCGACCGAAAGCG 39655 Query 135 ATGC-CCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGTGGCCATCATGGCG 193 | || ||| | ||||| || |||| |||||||||||| |||||||||| ||||||||| Sbjct 39656 ACGCGCCGCT-GATCGGCTATGGCGCGATGCTGATGGAGGCGTTCGTGGCGATCATGGCG 39714 Query 194 ATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAACAGCCCGGCTGCC 253 |||| | ||| ||| | | || |||||| | || ||| | |||||||| |||||||| Sbjct 39715 CTGGTCGGCGCGTCGATCCTGGACCCCGGCATCTATTTCACGATGAACAGTCCGGCTGCT 39774 Query 254 ATTGTCGGCACCGA 267 || |||||||||| Sbjct 39775 ATGATCGGCACCGA 39788 >seq10431 Length=14173 Score = 168 bits (186), Expect = 2e-39 Identities = 113/126 (90%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 4 CGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGCCTG 63 |||| |||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 13456 CGGCGACGGCCCGGTGTGGAAGGGCGGCATGTTCCCGTTCCTGTTCATCACCATCGCCTG 13397 Query 64 TGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCTCGC 123 |||||||||||| ||||||||||| ||||| ||||| ||||||||||| ||| |||| || Sbjct 13396 TGGCGCGGTCTCCGGTTTCCATGCACTGATTTCCTCCGGCACCACGCCGAAGCTGCTGGC 13337 Query 124 CAGTGA 129 || ||| Sbjct 13336 CAATGA 13331 >seq7832 Length=242706 Score = 91.5 bits (100), Expect = 3e-16 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 33 TGTTCCCGTTCCTGTTCATCACCATTGCCTGTGGCGCGGTCTCGGGTTTCCATGCGCTGA 92 ||||||| ||| | || || |||||||| ||||| ||| | || ||||||||||| | Sbjct 89599 TGTTCCCATTCTTATTTATTACCATTGCTTGTGGTGCGATTTCTGGTTTCCATGCCTTAG 89658 Query 93 TCTCCTCGGGCACCACGCCCAAGTTGCTCGCCAGTGAGAGCCATGCCCGTTACATCGGTT 152 |||| || || || || || || || | | | || | || ||| ||| |||| Sbjct 89659 TCTCGTCTGGAACTACACCTAAACTGATTGATAACGAAGTCAATATTCGTGTCATTGGTT 89718 Query 153 ACGGCGGCATGCTGATGGAGTCGTTCGTGGCCATCATGGCGATGGTTGCCGCCTCGGTGA 212 | ||||| ||| ||||||| || || || || |||||||| ||| || || | ||| Sbjct 89719 ATGGCGGTATGTTGATGGAATCATTTGTTGCAATCATGGCAATGATTTGTGCAACAGTGC 89778 Query 213 TTGAGCCCGGCGTGTACTTCGCCATGAA 240 |||| || || || || || || || || Sbjct 89779 TTGAACCAGGTGTTTATTTTGCGATTAA 89806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1161425074656