Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01001449.1
Length=395
Score E
Sequences producing significant alignments: (Bits) Value
seq12855 217 3e-54
seq10431 168 2e-39
seq7832 91.5 3e-16
>seq12855
Length=42906
Score = 217 bits (240), Expect = 3e-54
Identities = 202/254 (80%), Gaps = 2/254 (1%)
Strand=Plus/Plus
Query 15 CGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGCCTGTGGCGCGGTCT 74
|||| ||| |||||| || ||||| ||||||||||||||||| ||||| |||||||| |
Sbjct 39536 CGGTCTGGTCGGGCGGTCTCTTCCCCTTCCTGTTCATCACCATCGCCTGCGGCGCGGTGT 39595
Query 75 CGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCTCGCCAGTGAGAGCC 134
| || ||||| ||||||||| || ||||||||||||||| || |||| | || |||
Sbjct 39596 CCGGCTTCCACGCGCTGATCGCCAGCGGCACCACGCCCAAGCTGATCGCGACCGAAAGCG 39655
Query 135 ATGC-CCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGTGGCCATCATGGCG 193
| || ||| | ||||| || |||| |||||||||||| |||||||||| |||||||||
Sbjct 39656 ACGCGCCGCT-GATCGGCTATGGCGCGATGCTGATGGAGGCGTTCGTGGCGATCATGGCG 39714
Query 194 ATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAACAGCCCGGCTGCC 253
|||| | ||| ||| | | || |||||| | || ||| | |||||||| ||||||||
Sbjct 39715 CTGGTCGGCGCGTCGATCCTGGACCCCGGCATCTATTTCACGATGAACAGTCCGGCTGCT 39774
Query 254 ATTGTCGGCACCGA 267
|| ||||||||||
Sbjct 39775 ATGATCGGCACCGA 39788
>seq10431
Length=14173
Score = 168 bits (186), Expect = 2e-39
Identities = 113/126 (90%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 4 CGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGCCTG 63
|||| |||| ||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 13456 CGGCGACGGCCCGGTGTGGAAGGGCGGCATGTTCCCGTTCCTGTTCATCACCATCGCCTG 13397
Query 64 TGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCTCGC 123
|||||||||||| ||||||||||| ||||| ||||| ||||||||||| ||| |||| ||
Sbjct 13396 TGGCGCGGTCTCCGGTTTCCATGCACTGATTTCCTCCGGCACCACGCCGAAGCTGCTGGC 13337
Query 124 CAGTGA 129
|| |||
Sbjct 13336 CAATGA 13331
>seq7832
Length=242706
Score = 91.5 bits (100), Expect = 3e-16
Identities = 145/208 (70%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 33 TGTTCCCGTTCCTGTTCATCACCATTGCCTGTGGCGCGGTCTCGGGTTTCCATGCGCTGA 92
||||||| ||| | || || |||||||| ||||| ||| | || ||||||||||| |
Sbjct 89599 TGTTCCCATTCTTATTTATTACCATTGCTTGTGGTGCGATTTCTGGTTTCCATGCCTTAG 89658
Query 93 TCTCCTCGGGCACCACGCCCAAGTTGCTCGCCAGTGAGAGCCATGCCCGTTACATCGGTT 152
|||| || || || || || || || | | | || | || ||| ||| ||||
Sbjct 89659 TCTCGTCTGGAACTACACCTAAACTGATTGATAACGAAGTCAATATTCGTGTCATTGGTT 89718
Query 153 ACGGCGGCATGCTGATGGAGTCGTTCGTGGCCATCATGGCGATGGTTGCCGCCTCGGTGA 212
| ||||| ||| ||||||| || || || || |||||||| ||| || || | |||
Sbjct 89719 ATGGCGGTATGTTGATGGAATCATTTGTTGCAATCATGGCAATGATTTGTGCAACAGTGC 89778
Query 213 TTGAGCCCGGCGTGTACTTCGCCATGAA 240
|||| || || || || || || || ||
Sbjct 89779 TTGAACCAGGTGTTTATTTTGCGATTAA 89806
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1161425074656
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |