Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01001688.1 Length=394 Score E Sequences producing significant alignments: (Bits) Value seq10388 228 2e-57 seq7272 226 7e-57 seq10415 187 6e-45 seq681 147 5e-33 seq411 96.9 8e-18 seq9026 91.5 3e-16 seq7977 80.6 6e-13 >seq10388 Length=439 Score = 228 bits (252), Expect = 2e-57 Identities = 296/401 (74%), Gaps = 20/401 (5%) Strand=Plus/Plus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 |||||||||||| ||||||||||| | ||||| |||| || || ||||| ||||| | Sbjct 31 CGATGGTCAGCAGATCGCCGCCCACTTCCGTCCATGCCAAACCGGTCACCTGGCCGACCT 90 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120 |||| | || ||||||| || || ||| |||||||||||||| | ||||| Sbjct 91 GATCTTCCTTGCCGGCCAGACCAAAGTCGAAGCGACGCACGCCGAGGAATTTGTCCAGAT 150 Query 121 AGTCGGCCGTGACCTTCACCGAGAAGC--GTTT--TTC--CAGC-GCATGTTCCTTGACC 173 ||| | |||||||| || || | || ||| |||| ||| | | |||||| Sbjct 151 TGTCCGAATCCACCTTCACGGACGTGCCGGCTTCCTTCTTCAGCAGCAACTGC-TTGACC 209 Query 174 GCCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTG 233 |||||||||||||||||| || || ||||||||| ||||||||| ||||| || ||| Sbjct 210 ACCTTGCGGCAGATCTTCGAGACCTCGCGCTCCAGCGAACGCACACCAGCTTCCCGCGTG 269 Query 234 TAGTAGCGGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGG 293 || ||||||| ||||||||| | || || |||| || || || |||||| Sbjct 270 TAATAGCGGATGATGTCGCGCAGCG---CGGCTTC--GGTC-ATTTC------CTTCAGA 317 Query 294 CCATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCT 353 ||||| | |||||||||||| | ||| ||||||||||| ||| |||||| Sbjct 318 CCATTATTCTTGATCTGCTTGGGCAGCAAGTAGCGACGGGCGATGTTGACCTTTTCGTCT 377 Query 354 TCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 || |||||||||| ||||||||||||||||||||||||||| Sbjct 378 TCCGTGTAACCCGACAGGCGAATCACTTCCATCCGGTCCAG 418 >seq7272 Length=98981 Score = 226 bits (250), Expect = 7e-57 Identities = 290/398 (73%), Gaps = 5/398 (1%) Strand=Plus/Minus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 |||||||||||| |||||||| |||| |||||| || || || |||||| |||| | Sbjct 49872 CGATGGTCAGCAGATCGCCGCCGACCTCGGTCCAGGCAAGACCCACGACCTGGCCGATCT 49813 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120 | | | | | ||||| |||| ||| || | ||||| || || ||| ||| |||| Sbjct 49812 GGTTGTTCAGTTCGGCACGGCCATAGGTGTACTTGCGAACACCCAGGTAGTCAGGCAGGT 49753 Query 121 AGTCGGCCGTGACCTTCACCGAGAAGC----GTTTTTCCAGCGCATGTTCCTTGACCGCC 176 |||||| ||||| || | | || | || | ||| | ||||||| || Sbjct 49752 TGTCGGCAGTGACGACGACGGTGG-GCTCCAGCTTCTTGAGCTGTAGGCCCTTGACGACC 49694 Query 177 TTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAG 236 |||||||||||||| | | || ||||||||| |||||| ||||| || || |||||| Sbjct 49693 TTGCGGCAGATCTTGGACAGCTCGCGCTCCAGCGAACGCACGCCGGCCTCTCGCGTGTAG 49634 Query 237 TAGCGGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGCCA 296 ||||| |||||||||||||| | | | || | |||||||| | ||||| || Sbjct 49633 TAGCGCACGATGTCGCGGATGGCGGATTCCTCCACCCGCATCTCGCCTTCCTTCACACCG 49574 Query 297 TTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCG 356 ||| | |||||||||||| ||||| |||||||||||||| ||| ||||| ||| Sbjct 49573 TTGTTGGTGATCTGCTTGGGCAGCAGGTAGCGGATGGCGATGTTGACCTTTTCGTCCTCG 49514 Query 357 GTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 |||||||||| |||||| ||||||||||| |||||||| Sbjct 49513 GTGTAACCCGACAGGCGGATCACTTCCATGCGGTCCAG 49476 >seq10415 Length=20837 Score = 187 bits (206), Expect = 6e-45 Identities = 188/242 (78%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 154 CCAGCGCATGTTCCTTGACCGCCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCAC 213 ||||||| ||||| ||| |||||||||||| ||| ||||||| ||| |||||| | Sbjct 17286 CCAGCGCGATCTCCTTCACCACCTTGCGGCAGACCTTGGCGATCTCGCGTTCCAGGTTGC 17227 Query 214 GCACACCGGCTTCGCGGGTGTAGTAGCGGACGATGTCGCGGATCGTGCCGACTTCAAAT- 272 |||| || | |||||| ||||||||||| |||||||| |||||| || || | || Sbjct 17226 GCACGCCCGATTCGCGCGTGTAGTAGCGCACGATGTCCTGGATCGCATCG-CTGCCGATC 17168 Query 273 TCGATCTCGCCCTTCTTCAGGCCATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATG 332 || | ||| || || |||||| |||||| |||||||| ||| | ||||| | | Sbjct 17167 TCCAGCTCTTCCGGCTGCAGGCCGTTGGCCTTGATCTGCTTCGGCACCAGGTAGCGGGTC 17108 Query 333 GCGATGTTGATCTTCTCGTCTTCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCC 392 |||||||||| ||||||||| ||||||||||| || | ||| ||||||||||| |||||| Sbjct 17107 GCGATGTTGAGCTTCTCGTCCTCGGTGTAACCGGGGATGCGGATCACTTCCATGCGGTCC 17048 Query 393 AG 394 || Sbjct 17047 AG 17046 >seq681 Length=87588 Score = 147 bits (162), Expect = 5e-33 Identities = 276/400 (69%), Gaps = 12/400 (3%) Strand=Plus/Minus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 |||| ||||||| ||||||||||||| |||||| |||||||| ||||| |||| | Sbjct 59469 CGATCGTCAGCAGTTCGCCGCCCACCTCGGTCCAGGCCAGGCCGGTGACGGCGCCGATCT 59410 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120 ||| || | |||| ||| ||| | || |||||| ||||||||| ||| ||||| Sbjct 59409 GATTCTCTTCCTCGCCCACGCCATGGCGGAATTTCCGCACGCCGGCATAGTCGGCCAGGT 59350 Query 121 AGTCGGCCGTGACCTTCACCGAG----AAGCGTTTTTCCAGCGCATGTTCCTTGACCGCC 176 |||| ||||| || ||| | | ||| ||||| | || || | | |||| Sbjct 59349 TTTCGGGCGTGATCTCGACCTTGTCGAACGCG-CCTTCCA--GGATCTTGC-GCAGCGCC 59294 Query 177 TTGCGG--CAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGT 234 |||||| |||| ||| | | |||||||| || || |||||||| ||||| | Sbjct 59293 TTGCGGGCCAGA--CGCGCCACTTCCCGCTCCAGCGTGCGGACGCCGGCTTCACGGGTAT 59236 Query 235 AGTAGCGGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGC 294 |||| |||| | |||||| | || | | | | |||| |||||| |||||||||| Sbjct 59235 AGTAACGGATCAGGTCGCGCACCGCGGCCTCGGTCACCTCGAACTCGCCATTCTTCAGGC 59176 Query 295 CATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTT 354 ||| ||| |||||||||||| | || | |||||| | || ||||||||| | Sbjct 59175 CATGGGCGTCGATCTGCTTGGGCACCAGATGGCGCTGGGCGATCTCGACCTTCTCGTCCT 59116 Query 355 CGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 |||| || || || || || | ||||| ||||| || Sbjct 59115 CGGTATAGCCTTCGAGCCGGATGATCTCCATGCGGTCGAG 59076 >seq411 Length=849 Score = 96.9 bits (106), Expect = 8e-18 Identities = 114/150 (76%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 238 AGCGGACGATGTCGCGGATCGTGCCGACTT--CAAATTCGATCTCGCCCTTCTTCAGGCC 295 ||||| |||||||||||| | |||| | | | ||||||||| | ||||||||| Sbjct 703 AGCGGTTGATGTCGCGGATGG--CCGATTCGGCCACGCTGATCTCGCCTTCCTTCAGGCC 760 Query 296 ATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATG-GCGATGTTGATCTTCTCGTCTT 354 ||| | |||||||||||| ||||| | || || ||| || |||||||||| | Sbjct 761 GTTGTTCTTGATCTGCTTGGGCAGCAGGTA-ACGCTGCGCAATGCTGGTCTTCTCGTCCT 819 Query 355 CGGTGTAACCCGGCAGGCGAATCACTTCCA 384 |||||||||||| |||||| |||||||||| Sbjct 820 CGGTGTAACCCGACAGGCGGATCACTTCCA 849 >seq9026 Length=54586 Score = 91.5 bits (100), Expect = 3e-16 Identities = 140/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 201 CGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTAGCGGACGATGTCGCGGATCG-- 258 |||||||| ||||| |||||||| |||||||||||||||| | ||||||||||| Sbjct 52492 CGCTCCAGAGACCGCACGCCGGCTTCCCGGGTGTAGTAGCGGATCAGGTCGCGGATCGCC 52551 Query 259 -TGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGCCATTGGCCGAAATCTGCTTGGGC 317 || | | || | || |||| || ||||||||| | || | |||||||| Sbjct 52552 TTGTC--CGGCACGAT-GAACTCGGCCGGCTTCAGGCCGTGATCCTTGGCCAGCTTGGGC 52608 Query 318 GCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCGGTGTAACCCGGCAGGCGAATC 377 || || | ||||||| | | ||||||||| |||||||| || || | ||| || Sbjct 52609 AGGATGTGCCGCTTGGCGATCTCCAGCTTCTCGTCCTCGGTGTAGCCGGGGATGCGGATG 52668 Query 378 ACTTCCATCCGGTCCAG 394 | ||||| |||||||| Sbjct 52669 ATCTCCATGCGGTCCAG 52685 >seq7977 Length=7808 Score = 80.6 bits (88), Expect = 6e-13 Identities = 89/116 (77%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 ||||||| |||| |||||||||||| | |||||| || || || |||||| |||||| | Sbjct 1449 CGATGGTGAGCAGCTCGCCGCCCACATCGGTCCATGCAAGACCGGTGACCACACCGACCT 1508 Query 61 GATCCT-GCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTC 115 | || | ||| |||| | |||| ||| ||| || |||| |||||||| | ||| Sbjct 1509 GGTCGTCGCT-CTCGATCTCGCCGAAGCGGAACTTCGGCACACCGAGGAATTCCTC 1563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158225556544