Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01001688.1
Length=394
Score E
Sequences producing significant alignments: (Bits) Value
seq10388 228 2e-57
seq7272 226 7e-57
seq10415 187 6e-45
seq681 147 5e-33
seq411 96.9 8e-18
seq9026 91.5 3e-16
seq7977 80.6 6e-13
>seq10388
Length=439
Score = 228 bits (252), Expect = 2e-57
Identities = 296/401 (74%), Gaps = 20/401 (5%)
Strand=Plus/Plus
Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60
|||||||||||| ||||||||||| | ||||| |||| || || ||||| ||||| |
Sbjct 31 CGATGGTCAGCAGATCGCCGCCCACTTCCGTCCATGCCAAACCGGTCACCTGGCCGACCT 90
Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120
|||| | || ||||||| || || ||| |||||||||||||| | |||||
Sbjct 91 GATCTTCCTTGCCGGCCAGACCAAAGTCGAAGCGACGCACGCCGAGGAATTTGTCCAGAT 150
Query 121 AGTCGGCCGTGACCTTCACCGAGAAGC--GTTT--TTC--CAGC-GCATGTTCCTTGACC 173
||| | |||||||| || || | || ||| |||| ||| | | ||||||
Sbjct 151 TGTCCGAATCCACCTTCACGGACGTGCCGGCTTCCTTCTTCAGCAGCAACTGC-TTGACC 209
Query 174 GCCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTG 233
|||||||||||||||||| || || ||||||||| ||||||||| ||||| || |||
Sbjct 210 ACCTTGCGGCAGATCTTCGAGACCTCGCGCTCCAGCGAACGCACACCAGCTTCCCGCGTG 269
Query 234 TAGTAGCGGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGG 293
|| ||||||| ||||||||| | || || |||| || || || ||||||
Sbjct 270 TAATAGCGGATGATGTCGCGCAGCG---CGGCTTC--GGTC-ATTTC------CTTCAGA 317
Query 294 CCATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCT 353
||||| | |||||||||||| | ||| ||||||||||| ||| ||||||
Sbjct 318 CCATTATTCTTGATCTGCTTGGGCAGCAAGTAGCGACGGGCGATGTTGACCTTTTCGTCT 377
Query 354 TCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394
|| |||||||||| |||||||||||||||||||||||||||
Sbjct 378 TCCGTGTAACCCGACAGGCGAATCACTTCCATCCGGTCCAG 418
>seq7272
Length=98981
Score = 226 bits (250), Expect = 7e-57
Identities = 290/398 (73%), Gaps = 5/398 (1%)
Strand=Plus/Minus
Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60
|||||||||||| |||||||| |||| |||||| || || || |||||| |||| |
Sbjct 49872 CGATGGTCAGCAGATCGCCGCCGACCTCGGTCCAGGCAAGACCCACGACCTGGCCGATCT 49813
Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120
| | | | | ||||| |||| ||| || | ||||| || || ||| ||| ||||
Sbjct 49812 GGTTGTTCAGTTCGGCACGGCCATAGGTGTACTTGCGAACACCCAGGTAGTCAGGCAGGT 49753
Query 121 AGTCGGCCGTGACCTTCACCGAGAAGC----GTTTTTCCAGCGCATGTTCCTTGACCGCC 176
|||||| ||||| || | | || | || | ||| | ||||||| ||
Sbjct 49752 TGTCGGCAGTGACGACGACGGTGG-GCTCCAGCTTCTTGAGCTGTAGGCCCTTGACGACC 49694
Query 177 TTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAG 236
|||||||||||||| | | || ||||||||| |||||| ||||| || || ||||||
Sbjct 49693 TTGCGGCAGATCTTGGACAGCTCGCGCTCCAGCGAACGCACGCCGGCCTCTCGCGTGTAG 49634
Query 237 TAGCGGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGCCA 296
||||| |||||||||||||| | | | || | |||||||| | ||||| ||
Sbjct 49633 TAGCGCACGATGTCGCGGATGGCGGATTCCTCCACCCGCATCTCGCCTTCCTTCACACCG 49574
Query 297 TTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCG 356
||| | |||||||||||| ||||| |||||||||||||| ||| ||||| |||
Sbjct 49573 TTGTTGGTGATCTGCTTGGGCAGCAGGTAGCGGATGGCGATGTTGACCTTTTCGTCCTCG 49514
Query 357 GTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394
|||||||||| |||||| ||||||||||| ||||||||
Sbjct 49513 GTGTAACCCGACAGGCGGATCACTTCCATGCGGTCCAG 49476
>seq10415
Length=20837
Score = 187 bits (206), Expect = 6e-45
Identities = 188/242 (78%), Gaps = 2/242 (1%)
Strand=Plus/Minus
Query 154 CCAGCGCATGTTCCTTGACCGCCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCAC 213
||||||| ||||| ||| |||||||||||| ||| ||||||| ||| |||||| |
Sbjct 17286 CCAGCGCGATCTCCTTCACCACCTTGCGGCAGACCTTGGCGATCTCGCGTTCCAGGTTGC 17227
Query 214 GCACACCGGCTTCGCGGGTGTAGTAGCGGACGATGTCGCGGATCGTGCCGACTTCAAAT- 272
|||| || | |||||| ||||||||||| |||||||| |||||| || || | ||
Sbjct 17226 GCACGCCCGATTCGCGCGTGTAGTAGCGCACGATGTCCTGGATCGCATCG-CTGCCGATC 17168
Query 273 TCGATCTCGCCCTTCTTCAGGCCATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATG 332
|| | ||| || || |||||| |||||| |||||||| ||| | ||||| | |
Sbjct 17167 TCCAGCTCTTCCGGCTGCAGGCCGTTGGCCTTGATCTGCTTCGGCACCAGGTAGCGGGTC 17108
Query 333 GCGATGTTGATCTTCTCGTCTTCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCC 392
|||||||||| ||||||||| ||||||||||| || | ||| ||||||||||| ||||||
Sbjct 17107 GCGATGTTGAGCTTCTCGTCCTCGGTGTAACCGGGGATGCGGATCACTTCCATGCGGTCC 17048
Query 393 AG 394
||
Sbjct 17047 AG 17046
>seq681
Length=87588
Score = 147 bits (162), Expect = 5e-33
Identities = 276/400 (69%), Gaps = 12/400 (3%)
Strand=Plus/Minus
Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60
|||| ||||||| ||||||||||||| |||||| |||||||| ||||| |||| |
Sbjct 59469 CGATCGTCAGCAGTTCGCCGCCCACCTCGGTCCAGGCCAGGCCGGTGACGGCGCCGATCT 59410
Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120
||| || | |||| ||| ||| | || |||||| ||||||||| ||| |||||
Sbjct 59409 GATTCTCTTCCTCGCCCACGCCATGGCGGAATTTCCGCACGCCGGCATAGTCGGCCAGGT 59350
Query 121 AGTCGGCCGTGACCTTCACCGAG----AAGCGTTTTTCCAGCGCATGTTCCTTGACCGCC 176
|||| ||||| || ||| | | ||| ||||| | || || | | ||||
Sbjct 59349 TTTCGGGCGTGATCTCGACCTTGTCGAACGCG-CCTTCCA--GGATCTTGC-GCAGCGCC 59294
Query 177 TTGCGG--CAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGT 234
|||||| |||| ||| | | |||||||| || || |||||||| ||||| |
Sbjct 59293 TTGCGGGCCAGA--CGCGCCACTTCCCGCTCCAGCGTGCGGACGCCGGCTTCACGGGTAT 59236
Query 235 AGTAGCGGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGC 294
|||| |||| | |||||| | || | | | | |||| |||||| ||||||||||
Sbjct 59235 AGTAACGGATCAGGTCGCGCACCGCGGCCTCGGTCACCTCGAACTCGCCATTCTTCAGGC 59176
Query 295 CATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTT 354
||| ||| |||||||||||| | || | |||||| | || ||||||||| |
Sbjct 59175 CATGGGCGTCGATCTGCTTGGGCACCAGATGGCGCTGGGCGATCTCGACCTTCTCGTCCT 59116
Query 355 CGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394
|||| || || || || || | ||||| ||||| ||
Sbjct 59115 CGGTATAGCCTTCGAGCCGGATGATCTCCATGCGGTCGAG 59076
>seq411
Length=849
Score = 96.9 bits (106), Expect = 8e-18
Identities = 114/150 (76%), Gaps = 6/150 (4%)
Strand=Plus/Plus
Query 238 AGCGGACGATGTCGCGGATCGTGCCGACTT--CAAATTCGATCTCGCCCTTCTTCAGGCC 295
||||| |||||||||||| | |||| | | | ||||||||| | |||||||||
Sbjct 703 AGCGGTTGATGTCGCGGATGG--CCGATTCGGCCACGCTGATCTCGCCTTCCTTCAGGCC 760
Query 296 ATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATG-GCGATGTTGATCTTCTCGTCTT 354
||| | |||||||||||| ||||| | || || ||| || |||||||||| |
Sbjct 761 GTTGTTCTTGATCTGCTTGGGCAGCAGGTA-ACGCTGCGCAATGCTGGTCTTCTCGTCCT 819
Query 355 CGGTGTAACCCGGCAGGCGAATCACTTCCA 384
|||||||||||| |||||| ||||||||||
Sbjct 820 CGGTGTAACCCGACAGGCGGATCACTTCCA 849
>seq9026
Length=54586
Score = 91.5 bits (100), Expect = 3e-16
Identities = 140/197 (71%), Gaps = 6/197 (3%)
Strand=Plus/Plus
Query 201 CGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTAGCGGACGATGTCGCGGATCG-- 258
|||||||| ||||| |||||||| |||||||||||||||| | |||||||||||
Sbjct 52492 CGCTCCAGAGACCGCACGCCGGCTTCCCGGGTGTAGTAGCGGATCAGGTCGCGGATCGCC 52551
Query 259 -TGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGCCATTGGCCGAAATCTGCTTGGGC 317
|| | | || | || |||| || ||||||||| | || | ||||||||
Sbjct 52552 TTGTC--CGGCACGAT-GAACTCGGCCGGCTTCAGGCCGTGATCCTTGGCCAGCTTGGGC 52608
Query 318 GCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCGGTGTAACCCGGCAGGCGAATC 377
|| || | ||||||| | | ||||||||| |||||||| || || | ||| ||
Sbjct 52609 AGGATGTGCCGCTTGGCGATCTCCAGCTTCTCGTCCTCGGTGTAGCCGGGGATGCGGATG 52668
Query 378 ACTTCCATCCGGTCCAG 394
| ||||| ||||||||
Sbjct 52669 ATCTCCATGCGGTCCAG 52685
>seq7977
Length=7808
Score = 80.6 bits (88), Expect = 6e-13
Identities = 89/116 (77%), Gaps = 2/116 (2%)
Strand=Plus/Plus
Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60
||||||| |||| |||||||||||| | |||||| || || || |||||| |||||| |
Sbjct 1449 CGATGGTGAGCAGCTCGCCGCCCACATCGGTCCATGCAAGACCGGTGACCACACCGACCT 1508
Query 61 GATCCT-GCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTC 115
| || | ||| |||| | |||| ||| ||| || |||| |||||||| | |||
Sbjct 1509 GGTCGTCGCT-CTCGATCTCGCCGAAGCGGAACTTCGGCACACCGAGGAATTCCTC 1563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1158225556544
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |