Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01001690.1
Length=455
Score E
Sequences producing significant alignments: (Bits) Value
seq7995 140 9e-31
seq10050 129 2e-27
seq9470 120 8e-25
seq10438 118 3e-24
seq8237 111 4e-22
>seq7995
Length=296465
Score = 140 bits (154), Expect = 9e-31
Identities = 184/254 (72%), Gaps = 6/254 (2%)
Strand=Plus/Minus
Query 128 GTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGGCGATCAC 187
|||||||||| ||||||||||| | ||||| |||| ||| |||||||||||| ||
Sbjct 108209 GTGAACCTTGCGGATGAAGTACTTGATCATCTCCTCGGCGACTTCGAAGTCGGCGATGAC 108150
Query 188 GCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCATGCGCTT 247
|||||| |||||| || ||||| | || | ||| || || ||||| ||||| ||||
Sbjct 108149 GCCGTCGCGCATCGGGCGGATGGCTTCCATGTGGCCCGGGGTGCGGCCCAGCATCTGCTT 108090
Query 248 GGCCTCGGTGCCGACGGCAACGACACTTTTCTGATTACCATGGGTCCGAATGGCCACAAC 307
||||||| |||| ||||| ||| | || || || | || | ||||| ||
Sbjct 108089 GGCCTCGATGCCCACGGCGTGGACGATCTTGCGACCGCCGACATTGCGCAGCGCCACCAC 108030
Query 308 CGATGGCTCATTCAGGACGATACC---GCGCTCGCGCACGTAAATAAGGGTGTTGGCAGT 364
||| ||||| ||||| ||||| || || || || ||| || || |||||||| ||
Sbjct 108029 CGACGGCTCGTTCAGCACGATCCCCTTGCCCT---TCATGTAGATGAGCGTGTTGGCGGT 107973
Query 365 GCCCAGGTCAATGG 378
||| ||||| ||||
Sbjct 107972 GCCGAGGTCGATGG 107959
>seq10050
Length=33294
Score = 129 bits (142), Expect = 2e-27
Identities = 248/363 (68%), Gaps = 21/363 (6%)
Strand=Plus/Minus
Query 47 GATGGCACGACGCTCCACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCT 106
|||||| || ||||| ||||||||||| ||| || |||||||| | | || |||||
Sbjct 10692 GATGGCGCGGCGCTCGACCTGGGTGGAGCCGCAGGGCACGCAGATGATGATGCGCGGGCT 10633
Query 107 GGGCTGCAGGAAACTGTTTTCG--TGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCG 164
|||| || || | || || ||| | |||||||| | || | ||||| ||||
Sbjct 10632 GGGCGTGAG--CACCGAGCGCGGATGCACCATCTTGATGAACTGCTTGATCATCTGCTCG 10575
Query 165 CAGACGCTGAAGTCGGCGATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCT 224
|| | ||||||||| |||||||| || |||||||| || ||||| | || |||||
Sbjct 10574 GTGATGACGAAGTCGGCAATCACGCCATCCTTCATCGGGCGGATGGCCTCGATGTTGCCG 10515
Query 225 GGTGTACGGCCGAGCATGCGCTTGGCCTCGGTGCCGACGGCAACGA-CACTTTTCTGATT 283
|| ||| |||||| |||||| || ||| || || || ||| || ||
Sbjct 10514 GGCACCTTGCCCAGCATGGCCTTGGCTTCACGGCCCACCGCCTGGATCAC----CTTCTT 10459
Query 284 ACCATG-GGTC-----------CGAATGGCCACAACCGATGGCTCATTCAGGACGATACC 331
||||| || | || ||||| ||||| || || || | ||| || || ||
Sbjct 10458 GCCATGCGGGCCGCCTTCGTGGCGGATGGCGACAACGGAGGGTTCGTCCAGAACAATGCC 10399
Query 332 GCGCTCGCGCACGTAAATAAGGGTGTTGGCAGTGCCCAGGTCAATGGAAAGATCGCTGGA 391
||||| || |||| ||||||||||| ||||| || ||||||| ||| ||| ||||
Sbjct 10398 CTTGTCGCGGGCGAAAATCAGGGTGTTGGCTGTGCCAAGATCAATGGCAAGGTCGGTGGA 10339
Query 392 AAA 394
||
Sbjct 10338 GAA 10336
>seq9470
Length=127963
Score = 120 bits (132), Expect = 8e-25
Identities = 182/255 (71%), Gaps = 8/255 (3%)
Strand=Plus/Minus
Query 128 GTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGGCGATCAC 187
|||||||||| |||||||| || | ||||| |||| ||| |||||||||||| ||
Sbjct 69576 GTGAACCTTGCGGATGAAGTGCTTGATCATCTCCTCGGCGACTTCGAAGTCGGCGATGAC 69517
Query 188 GCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCATGCGCTT 247
||||| ||| || || ||||| | || | || || || ||||| ||||| | ||
Sbjct 69516 CCCGTCGCGCATGGGGCGGATGGCCTCCATGTGCCCAGGCGTGCGGCCCAGCATCTGTTT 69457
Query 248 GGCCTCGGTGCCGACGGCAACGAC-ACTTTTCTGATTACCATGGGTCCGAATGGCCACAA 306
||||||| |||||||||| || || || | | || | | || | ||| || |
Sbjct 69456 GGCCTCGATGCCGACGGCGTGCACGACCTTGC-GCCCCCCGACGTTGCGCAGGGCGACCA 69398
Query 307 CCGATGGCTCATTCAGGACGATACC---GCGCTCGCGCACGTAAATAAGGGTGTTGGCAG 363
|||||||||| ||||||||||| || || || || || || || |||||||| |
Sbjct 69397 CCGATGGCTCGTTCAGGACGATGCCCTTGCCCT---TCATATAGATGAGCGTGTTGGCGG 69341
Query 364 TGCCCAGGTCAATGG 378
|||| ||||| ||||
Sbjct 69340 TGCCGAGGTCGATGG 69326
>seq10438
Length=144381
Score = 118 bits (130), Expect = 3e-24
Identities = 272/406 (67%), Gaps = 19/406 (5%)
Strand=Plus/Minus
Query 3 ATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCTCC 62
|||||||| |||| |||||| || | || ||||| || ||||| |||||
Sbjct 53852 ATCAGGAATACTTGTTTGGCACCTGCACGCTCTGCAGATTCTTTAATCGCACGGCGCTCT 53793
Query 63 ACCTGGGTGGA-CTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAACT 121
|| || ||||| | | | ||| || ||||| | | || |||||||| | | |
Sbjct 53792 ACTTGCGTGGAGCCTAC-CGGTACACAGATGATGATGCGTGGGCTGGGGGAAAACCAGCG 53734
Query 122 GTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGGC 181
| ||| || || ||| ||| || | | ||||| | |||| || | ||||||| ||
Sbjct 53733 GGATTCATGTACTTTGCGGATAAAAAATTTGAGCATTTGCTCGGTGATGGTGAAGTCTGC 53674
Query 182 GATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCAT 241
|||||||||||||||||||| || || || ||| || | |||| || || |||||
Sbjct 53673 AATCACGCCGTCTTTCATCGGGCGGATAGCCTGAATGTTAGCCGGTGCGCGACCCAGCAT 53614
Query 242 GCGCTTGGCCTCGGTGCCGACGGC-AACGACACTTTTCTGATTACC-ATGGGTC------ 293
|| || || |||| || || || ||| ||||||| ||||| |||| |
Sbjct 53613 GCCTTTAGCATCGGAACCAACCGCTAACAGCACTTTT----TTACCGTTGGGACCACCCT 53558
Query 294 -----CGAATGGCCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAAA 348
||||| ||||| |||||||| |||| ||| || || || |||| ||||
Sbjct 53557 CTAAGCGAATCGCCACTACCGATGGTTCATCCAGCACAATGCCCTTGCCGCGTGAATAAA 53498
Query 349 TAAGGGTGTTGGCAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAA 394
| || |||||||||||||| | ||| |||| | ||| | |||||
Sbjct 53497 TCAGCGTGTTGGCAGTGCCTAAGTCGATGGCTAAATCATTAGAAAA 53452
>seq8237
Length=506431
Score = 111 bits (122), Expect = 4e-22
Identities = 261/392 (67%), Gaps = 4/392 (1%)
Strand=Plus/Plus
Query 12 ACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCTCCACCTGGGTG 71
|| ||||| ||||| ||| || | | |||||| || ||||| || || ||| ||
Sbjct 360660 ACATCACGTGCACCTGCGTTAAACACAGCTTCACGAATCGCACGGCGTTCTACCAATGTT 360719
Query 72 GACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAACTGTTTTCGTGA 131
|| || || || ||||| | || |||||||| || | | |||| ||||| ||
Sbjct 360720 GATTTACATGGTACGCATACCACTACACGAGGTGCAGGTGGAAATAAACGTTTTTCATGC 360779
Query 132 ACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGGCGATCACGCCG 191
|| || || || | | | ||| | || || ||| || || || || ||
Sbjct 360780 ACTTTACCAATAAATTGATTTAACATGGTTTCAGTAACTTCGAAATCTGCAATAACACCA 360839
Query 192 TCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCATGCGCTTGGCC 251
|||||||||||||| || |||| ||||||| |||| ||||| || ||||| |||| ||
Sbjct 360840 TCTTTCATCGGACGGATTGCAGAAATATTGGCTGGGGTACGACCAAGCATTTGCTTAGCA 360899
Query 252 TCGGTGCCGACGGCAACGACACTTTTCTGATTACCATGGGTCCGAATGGCCACAACCGAT 311
|| || || || | ||| ||||||| |||| | ||||| |||||||| |
Sbjct 360900 TCTAAACCCACAGCTGCAACAATTTTCTGCGAACCACTGTGACGAATCGCCACAACTGTC 360959
Query 312 GGCTCATTCAGGACGATACCGC--GCTCGCGCACGTAAATAAGGGTGTTGGCAGTGCCCA 369
|| || || | | || || | || | ||| |||||||| || || ||||| || |
Sbjct 360960 GGTTCGTTTAATATAATGCCCCTTCCTGGTGCA--TAAATAAGTGTATTTGCAGTACCTA 361017
Query 370 GGTCAATGGAAAGATCGCTGGAAAACATGCCA 401
||||||| ||||| ||||||| ||||
Sbjct 361018 AATCAATGGCGAGATCTGGCGAAAACAAGCCA 361049
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1353396161376
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |