Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01001690.1 Length=455 Score E Sequences producing significant alignments: (Bits) Value seq7995 140 9e-31 seq10050 129 2e-27 seq9470 120 8e-25 seq10438 118 3e-24 seq8237 111 4e-22 >seq7995 Length=296465 Score = 140 bits (154), Expect = 9e-31 Identities = 184/254 (72%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 128 GTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGGCGATCAC 187 |||||||||| ||||||||||| | ||||| |||| ||| |||||||||||| || Sbjct 108209 GTGAACCTTGCGGATGAAGTACTTGATCATCTCCTCGGCGACTTCGAAGTCGGCGATGAC 108150 Query 188 GCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCATGCGCTT 247 |||||| |||||| || ||||| | || | ||| || || ||||| ||||| |||| Sbjct 108149 GCCGTCGCGCATCGGGCGGATGGCTTCCATGTGGCCCGGGGTGCGGCCCAGCATCTGCTT 108090 Query 248 GGCCTCGGTGCCGACGGCAACGACACTTTTCTGATTACCATGGGTCCGAATGGCCACAAC 307 ||||||| |||| ||||| ||| | || || || | || | ||||| || Sbjct 108089 GGCCTCGATGCCCACGGCGTGGACGATCTTGCGACCGCCGACATTGCGCAGCGCCACCAC 108030 Query 308 CGATGGCTCATTCAGGACGATACC---GCGCTCGCGCACGTAAATAAGGGTGTTGGCAGT 364 ||| ||||| ||||| ||||| || || || || ||| || || |||||||| || Sbjct 108029 CGACGGCTCGTTCAGCACGATCCCCTTGCCCT---TCATGTAGATGAGCGTGTTGGCGGT 107973 Query 365 GCCCAGGTCAATGG 378 ||| ||||| |||| Sbjct 107972 GCCGAGGTCGATGG 107959 >seq10050 Length=33294 Score = 129 bits (142), Expect = 2e-27 Identities = 248/363 (68%), Gaps = 21/363 (6%) Strand=Plus/Minus Query 47 GATGGCACGACGCTCCACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCT 106 |||||| || ||||| ||||||||||| ||| || |||||||| | | || ||||| Sbjct 10692 GATGGCGCGGCGCTCGACCTGGGTGGAGCCGCAGGGCACGCAGATGATGATGCGCGGGCT 10633 Query 107 GGGCTGCAGGAAACTGTTTTCG--TGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCG 164 |||| || || | || || ||| | |||||||| | || | ||||| |||| Sbjct 10632 GGGCGTGAG--CACCGAGCGCGGATGCACCATCTTGATGAACTGCTTGATCATCTGCTCG 10575 Query 165 CAGACGCTGAAGTCGGCGATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCT 224 || | ||||||||| |||||||| || |||||||| || ||||| | || ||||| Sbjct 10574 GTGATGACGAAGTCGGCAATCACGCCATCCTTCATCGGGCGGATGGCCTCGATGTTGCCG 10515 Query 225 GGTGTACGGCCGAGCATGCGCTTGGCCTCGGTGCCGACGGCAACGA-CACTTTTCTGATT 283 || ||| |||||| |||||| || ||| || || || ||| || || Sbjct 10514 GGCACCTTGCCCAGCATGGCCTTGGCTTCACGGCCCACCGCCTGGATCAC----CTTCTT 10459 Query 284 ACCATG-GGTC-----------CGAATGGCCACAACCGATGGCTCATTCAGGACGATACC 331 ||||| || | || ||||| ||||| || || || | ||| || || || Sbjct 10458 GCCATGCGGGCCGCCTTCGTGGCGGATGGCGACAACGGAGGGTTCGTCCAGAACAATGCC 10399 Query 332 GCGCTCGCGCACGTAAATAAGGGTGTTGGCAGTGCCCAGGTCAATGGAAAGATCGCTGGA 391 ||||| || |||| ||||||||||| ||||| || ||||||| ||| ||| |||| Sbjct 10398 CTTGTCGCGGGCGAAAATCAGGGTGTTGGCTGTGCCAAGATCAATGGCAAGGTCGGTGGA 10339 Query 392 AAA 394 || Sbjct 10338 GAA 10336 >seq9470 Length=127963 Score = 120 bits (132), Expect = 8e-25 Identities = 182/255 (71%), Gaps = 8/255 (3%) Strand=Plus/Minus Query 128 GTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGGCGATCAC 187 |||||||||| |||||||| || | ||||| |||| ||| |||||||||||| || Sbjct 69576 GTGAACCTTGCGGATGAAGTGCTTGATCATCTCCTCGGCGACTTCGAAGTCGGCGATGAC 69517 Query 188 GCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCATGCGCTT 247 ||||| ||| || || ||||| | || | || || || ||||| ||||| | || Sbjct 69516 CCCGTCGCGCATGGGGCGGATGGCCTCCATGTGCCCAGGCGTGCGGCCCAGCATCTGTTT 69457 Query 248 GGCCTCGGTGCCGACGGCAACGAC-ACTTTTCTGATTACCATGGGTCCGAATGGCCACAA 306 ||||||| |||||||||| || || || | | || | | || | ||| || | Sbjct 69456 GGCCTCGATGCCGACGGCGTGCACGACCTTGC-GCCCCCCGACGTTGCGCAGGGCGACCA 69398 Query 307 CCGATGGCTCATTCAGGACGATACC---GCGCTCGCGCACGTAAATAAGGGTGTTGGCAG 363 |||||||||| ||||||||||| || || || || || || || |||||||| | Sbjct 69397 CCGATGGCTCGTTCAGGACGATGCCCTTGCCCT---TCATATAGATGAGCGTGTTGGCGG 69341 Query 364 TGCCCAGGTCAATGG 378 |||| ||||| |||| Sbjct 69340 TGCCGAGGTCGATGG 69326 >seq10438 Length=144381 Score = 118 bits (130), Expect = 3e-24 Identities = 272/406 (67%), Gaps = 19/406 (5%) Strand=Plus/Minus Query 3 ATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCTCC 62 |||||||| |||| |||||| || | || ||||| || ||||| ||||| Sbjct 53852 ATCAGGAATACTTGTTTGGCACCTGCACGCTCTGCAGATTCTTTAATCGCACGGCGCTCT 53793 Query 63 ACCTGGGTGGA-CTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAACT 121 || || ||||| | | | ||| || ||||| | | || |||||||| | | | Sbjct 53792 ACTTGCGTGGAGCCTAC-CGGTACACAGATGATGATGCGTGGGCTGGGGGAAAACCAGCG 53734 Query 122 GTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGGC 181 | ||| || || ||| ||| || | | ||||| | |||| || | ||||||| || Sbjct 53733 GGATTCATGTACTTTGCGGATAAAAAATTTGAGCATTTGCTCGGTGATGGTGAAGTCTGC 53674 Query 182 GATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCAT 241 |||||||||||||||||||| || || || ||| || | |||| || || ||||| Sbjct 53673 AATCACGCCGTCTTTCATCGGGCGGATAGCCTGAATGTTAGCCGGTGCGCGACCCAGCAT 53614 Query 242 GCGCTTGGCCTCGGTGCCGACGGC-AACGACACTTTTCTGATTACC-ATGGGTC------ 293 || || || |||| || || || ||| ||||||| ||||| |||| | Sbjct 53613 GCCTTTAGCATCGGAACCAACCGCTAACAGCACTTTT----TTACCGTTGGGACCACCCT 53558 Query 294 -----CGAATGGCCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAAA 348 ||||| ||||| |||||||| |||| ||| || || || |||| |||| Sbjct 53557 CTAAGCGAATCGCCACTACCGATGGTTCATCCAGCACAATGCCCTTGCCGCGTGAATAAA 53498 Query 349 TAAGGGTGTTGGCAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAA 394 | || |||||||||||||| | ||| |||| | ||| | ||||| Sbjct 53497 TCAGCGTGTTGGCAGTGCCTAAGTCGATGGCTAAATCATTAGAAAA 53452 >seq8237 Length=506431 Score = 111 bits (122), Expect = 4e-22 Identities = 261/392 (67%), Gaps = 4/392 (1%) Strand=Plus/Plus Query 12 ACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCTCCACCTGGGTG 71 || ||||| ||||| ||| || | | |||||| || ||||| || || ||| || Sbjct 360660 ACATCACGTGCACCTGCGTTAAACACAGCTTCACGAATCGCACGGCGTTCTACCAATGTT 360719 Query 72 GACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAACTGTTTTCGTGA 131 || || || || ||||| | || |||||||| || | | |||| ||||| || Sbjct 360720 GATTTACATGGTACGCATACCACTACACGAGGTGCAGGTGGAAATAAACGTTTTTCATGC 360779 Query 132 ACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGGCGATCACGCCG 191 || || || || | | | ||| | || || ||| || || || || || Sbjct 360780 ACTTTACCAATAAATTGATTTAACATGGTTTCAGTAACTTCGAAATCTGCAATAACACCA 360839 Query 192 TCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCATGCGCTTGGCC 251 |||||||||||||| || |||| ||||||| |||| ||||| || ||||| |||| || Sbjct 360840 TCTTTCATCGGACGGATTGCAGAAATATTGGCTGGGGTACGACCAAGCATTTGCTTAGCA 360899 Query 252 TCGGTGCCGACGGCAACGACACTTTTCTGATTACCATGGGTCCGAATGGCCACAACCGAT 311 || || || || | ||| ||||||| |||| | ||||| |||||||| | Sbjct 360900 TCTAAACCCACAGCTGCAACAATTTTCTGCGAACCACTGTGACGAATCGCCACAACTGTC 360959 Query 312 GGCTCATTCAGGACGATACCGC--GCTCGCGCACGTAAATAAGGGTGTTGGCAGTGCCCA 369 || || || | | || || | || | ||| |||||||| || || ||||| || | Sbjct 360960 GGTTCGTTTAATATAATGCCCCTTCCTGGTGCA--TAAATAAGTGTATTTGCAGTACCTA 361017 Query 370 GGTCAATGGAAAGATCGCTGGAAAACATGCCA 401 ||||||| ||||| ||||||| |||| Sbjct 361018 AATCAATGGCGAGATCTGGCGAAAACAAGCCA 361049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1353396161376