Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq8549 208 2e-51
seq8424 194 4e-47
seq6993 190 5e-46
seq11968 185 2e-44
seq7320 178 3e-42
seq10654 176 1e-41
seq9910 176 1e-41
>seq8549
Length=2370
Score = 208 bits (230), Expect = 2e-51
Identities = 295/408 (72%), Gaps = 14/408 (3%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||| || |||| |||| |||||| ||| ||||||| | || || | | | |
Sbjct 217 CGACTACCCCCTTCGGGCTCGTCTTAGGGGCCGGCTCACCCTGCGCGGATTAGCCTTGCG 276
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
| ||||||||||| |||||| ||| || ||||| | ||||||||||| ||
Sbjct 277 CAGGAACCCTTGGTCTTTCGGCGAGAGGGCATCTCACCCTCTTTATCGCTACTCATGTCT 336
Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTG-ACACG 178
|||||| |||| | | |||||| || || | ||| | ||||||| | ||
Sbjct 337 GCATTCGCACTTCCGATACCTCCACGACCCATT-ACCAGATCGCTTCACAGGCGTACGGA 395
Query 179 ACGCTCCCCTACC-CAACCACACAGGTTGCCAC----AGCTTCGGCGGATAACTTAAGCC 233
||||||| ||||| | ||| || | ||| |||||||| | | ||| ||||
Sbjct 396 ACGCTCCGCTACCGCGTGTACAAAG-TACACACCCTAAGCTTCGGTGCGTGTCTTGAGCC 454
Query 234 CCGCTACATTATCGGCGCGGAATCACTTG-----ACCAGTGAGCTATTACGCACTCTTTC 288
||| ||||| ||| ||| ||| | |||| ||||||||||| |||||| |||||
Sbjct 455 CCGTTACATCTTCGCCGCAGAAACCCTTGTTTAGACCAGTGAGCTGTTACGCTTTCTTTA 514
Query 289 AAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCA 348
||||||||||||||| ||||||||||||||||||| | | | ||||||| ||||||||
Sbjct 515 AAGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTTTTGGGATTTCCACATGCTTTCCCA 574
Query 349 CTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396
|| || ||| |||| ||| ||||||||| | || |||||||||||||
Sbjct 575 CTTAGACACGACTTGGGGACCTTAGCTGTAGGTCAGGGCTGTTTCCCT 622
>seq8424
Length=263062
Score = 194 bits (214), Expect = 4e-47
Identities = 293/413 (71%), Gaps = 23/413 (6%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||| || |||| |||| |||||| ||| || |||| | |||| | ||| |
Sbjct 260460 CGACTACCCCCTTCGGGCTCGTCTTAGGGGCCGGCTTACCCTGCTCAGATTAGCTTTAAG 260519
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCCT 119
| |||||||||||| |||||| ||| || ||||| | | ||||||||||| ||
Sbjct 260520 CAGGAACCCTTGGAATTTCGGCGAGAGGGCATCTCACCCTCTTAATCGCTACTCATGTCT 260579
Query 120 GCATTCTCACTCGCATCAACTCCA----CCACACAG-TCACCCGGCAGCTTCACCA-CTG 173
|||||| |||| | | ||||| || ||| | || ||| ||||| ||
Sbjct 260580 GCATTCGCACTTCCGATACCTCCAGAGCCCTCACGGGTCTCCC------TTCACTGGCTT 260633
Query 174 ACACGACGCTCCCCTACCCAACCACA-----CAGGTTGCCACAGCTTCGGCGGATAACTT 228
||| ||||||| ||||| | | || | || |||||||| | || |||
Sbjct 260634 ACAGAACGCTCCGCTACCGCTCGTGATTGCTCACGAACCCTAAGCTTCGGTGTATGGCTT 260693
Query 229 AAGCCCCGCTACATTATCGGCGCGGAATCACTT-----GACCAGTGAGCTATTACGCACT 283
||||||| |||||| ||||||| | | ||| |||||||||||| |||||| |
Sbjct 260694 TAGCCCCGTTACATTTTCGGCGCAAAGACCCTTATTTAGACCAGTGAGCTGTTACGCTTT 260753
Query 284 CTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTT 343
|||| || |||||||||||| ||||||||||||||||||| | | || |||||| |||
Sbjct 260754 CTTTAAATGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTTTTGGAAATCCCACATGCTT 260813
Query 344 TCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396
||||||| ||| | |||| ||| ||||||||| | | |||||||||||||
Sbjct 260814 TCCCACTTAGTGATGACTTGGGGACCTTAGCTGTAGGTTAGGGCTGTTTCCCT 260866
>seq6993
Length=5165
Score = 190 bits (210), Expect = 5e-46
Identities = 290/400 (73%), Gaps = 10/400 (3%)
Strand=Plus/Minus
Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAAC-TTGACCCT 62
|||||| | || ||||||||||||| ||||||||||| | | || ||| |||| |
Sbjct 2051 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACCCTGCTCCGATGAACGTTGAACAG 1992
Query 63 GGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGC 121
| |||| | || | | ||||| |||| || |||||| | ||||||||||| | ||
Sbjct 1991 GAAACCTTGGGCTTA-CGGCGTGCGGGCTTTTCACCCGCATTATCGCTACTCATGTCAGC 1933
Query 122 ATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGA 179
|||| |||| | || | ||||| || | | || | || |||||| || ||| |
Sbjct 1932 ATTCGCACTTCTGAT-ACCTCCAGCATCCTTT-ACAAGACACCTTCACAGGCTTACAGAA 1875
Query 180 CGCTCCCCTACCCAA-CCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCGCT 238
||||| |||||| | || | | | || ||||||||| | | |||| |||||| |
Sbjct 1874 CGCTCTCCTACCATATCCTTGCGGATATCCGCAGCTTCGGTGACTGGCTTA-GCCCCGTT 1816
Query 239 ACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCT 298
|||| || |||| | | ||| || |||||||||||||||| ||||| ||||||||||
Sbjct 1815 ACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAAGGATGGCT 1756
Query 299 GCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACC 358
||||| |||||||||||||| ||| | || |||| || ||| ||||| || ||
Sbjct 1755 GCTTCTAAGCCAACCTCCTGACTGTTTTAGCCTTCCCACTTCGTTTTCCACTTAGCCA-A 1697
Query 359 ACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398
||| ||| ||||||||| | |||||| |||||||||||
Sbjct 1696 TCTTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 1657
>seq11968
Length=3642
Score = 185 bits (204), Expect = 2e-44
Identities = 291/410 (71%), Gaps = 20/410 (5%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| |||||||||||||||| ||| || |||| | ||||| ||||| ||
Sbjct 2681 CGACTACGCCTCTCGGCCTCGCCTTAGGGACCGGCTAACCCTGCGCAGATTAACTTTACG 2622
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCC-GTCACACGCTACTCATGCCT 119
| |||||||||||| ||||| | | || ||| | || || |||| |||||
Sbjct 2621 CAGGAACCCTTGGACTTACGGCGACAGTGTCTCTCACACTGTTTGTCGTTACTTATGCCA 2562
Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGC-TTCACCA-CTGACAC 177
||||||||||| || | ||||| | | |||| | | | ||||| || |
Sbjct 2561 GCATTCTCACTTCCAATACCTCCAGG-CGCCCTCACGGGTCGCCCTTCACAGGCTTATGG 2503
Query 178 GACGCTCCCCTACCCAACCACACAGGTTGCCAC--AGCTTCGGCGGATAACTTAAGCCCC 235
||||||| ||||| | || | | | | ||||||||| | ||| ||||||
Sbjct 2502 AACGCTCCGCTACCG---CGCATTGCTGCGCCCTAAGCTTCGGCTCGTGGCTTGAGCCCC 2446
Query 236 GCTACATTATCGGCGCGGAATCACTT-----GACCAGTGAGCTATTACGCACTCTTTCAA 290
| ||||| ||||||| | | ||| |||||||||||| |||||| ||||| ||
Sbjct 2445 GTTACATCTTCGGCGCAAAGACCCTTATTTAGACCAGTGAGCTGTTACGCTTTCTTTAAA 2386
Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350
|||||||||| ||| |||||||||||| | | | | ||||||||||||||||
Sbjct 2385 TGATGGCTGCT------CCACCCTCCTGGTTGTTTTGGGATCCTCACATCCTTTCCCACT 2332
Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|| ||| | |||||||||||||||| | || ||| |||||||||||||
Sbjct 2331 TAGCCACGAATTAGGGGCCTTAGCTGTAGGTCCGGGTTGTTTCCCTCTCG 2282
>seq7320
Length=4144
Score = 178 bits (196), Expect = 3e-42
Identities = 290/405 (72%), Gaps = 17/405 (4%)
Strand=Plus/Minus
Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63
|||||| | || ||||| ||||||| ||||||||||| | || || ||| | | | |
Sbjct 3121 CTACGCATCTCTGCCTCACCTTAGGGGCCGACTCACCCTGCGCCGATGAACGTTGCGCAG 3062
Query 64 GAACCCTTGGATAATCGGCGGACGGGA----TTCCCACCCGTCACACGCTACTCATGCCT 119
||| |||||| |||||| |||| ||| | ||| | | ||||||||||| |
Sbjct 3061 GAAACCTTGGGCTTTCGGCGA--GGGAGCTTTTCACTCCCTTTAT-CGCTACTCATGTCA 3005
Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177
|||||| |||| | || | ||||| || | |||| || |||| | | |||
Sbjct 3004 GCATTCGCACTTCTGAT-ACCTCCAGCATTCC-TCACAGAACACCTTCGCAGGCCTACAG 2947
Query 178 GACGCTCCCCTACCCAACCAC---ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCC 234
|||||| |||||| || | || || || ||||||||| |||| ||||
Sbjct 2946 AACGCTCTCCTACCATACTAGTAAACTAGTATCCGCAGCTTCGGTTACGTGCTTA-GCCC 2888
Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGAT 294
|| ||||| || |||| | | ||| ||||||||||||||||||| ||||| || |||
Sbjct 2887 CGTTACATCTTCCGCGCAGGACGACTCGACCAGTGAGCTATTACGCTTTCTTTAAATGAT 2828
Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGT 354
||||||||| |||||||| |||||| |||||| || |||| || ||| ||||| ||
Sbjct 2827 GGCTGCTTCTAAGCCAACATCCTGGCTGTCTATGCCTTCCCACTTCGTTTTCCACTTAG- 2769
Query 355 CACCAC-TTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398
||| | |||||| ||||||||| | |||||| |||||||||||
Sbjct 2768 CACGTCATTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 2724
>seq10654
Length=1634
Score = 176 bits (194), Expect = 1e-41
Identities = 292/408 (72%), Gaps = 23/408 (6%)
Strand=Plus/Minus
Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63
|||||| | || ||||||||||||| ||||||||||| || || ||| | | |
Sbjct 787 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACCCTACGCCGATGAACGTTGCGTAG 728
Query 64 GAACCCTTG-GATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCCTGC 121
||| ||||| | | | ||||| ||| || ||||| | |||||||||||| | ||
Sbjct 727 GAAACCTTGCGCTTA-CGGCGAGGGGGCTTTTCACCCCCTTTAACGCTACTCATGTCAGC 669
Query 122 ATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGA 179
|||| |||| | || || || ||| | || ||| |||| |||||| || ||| |
Sbjct 668 ATTCGCACTTCTGAT--ACCTCAGCACCC-GTTACCAGGCACCTTCACAGGCTTACAGAA 612
Query 180 CGCTCCCCTACC-CAACCACACAGGTTGCCA-----CAGCTTCGGCGGATAACT---TAA 230
||||| |||||| | || | | |||| | ||||||||| ||||| | |
Sbjct 611 CGCTCTCCTACCACTTGCA-ATAAATTGCAAATCCGCAGCTTCGG----TAACTGGCTTA 557
Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290
|||||| ||||| || |||| | | ||| || |||||||||||||||| ||||| ||
Sbjct 556 GCCCCGTTACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAA 497
Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350
|||||||||||| |||||||| ||||| ||| | || |||| || |||||||||
Sbjct 496 TGATGGCTGCTTCTAAGCCAACATCCTGACTGTTTTAGCCTTCCCACTTCGTTTCCCACT 437
Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398
|| || |||||| ||||||||| | |||||| |||||||||||
Sbjct 436 TAGCCA-ATTTTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 390
>seq9910
Length=308115
Score = 176 bits (194), Expect = 1e-41
Identities = 292/408 (72%), Gaps = 23/408 (6%)
Strand=Plus/Plus
Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63
|||||| | || ||||||||||||| ||||||||||| || || ||| | | |
Sbjct 257778 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACCCTACGCCGATGAACGTTGCGTAG 257837
Query 64 GAACCCTTG-GATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCCTGC 121
||| ||||| | | | ||||| ||| || ||||| | |||||||||||| | ||
Sbjct 257838 GAAACCTTGCGCTTA-CGGCGAGGGGGCTTTTCACCCCCTTTAACGCTACTCATGTCAGC 257896
Query 122 ATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGA 179
|||| |||| | || || || ||| | || ||| |||| |||||| || ||| |
Sbjct 257897 ATTCGCACTTCTGAT--ACCTCAGCACCC-GTTACCAGGCACCTTCACAGGCTTACAGAA 257953
Query 180 CGCTCCCCTACC-CAACCACACAGGTTGCCA-----CAGCTTCGGCGGATAACT---TAA 230
||||| |||||| | || | | |||| | ||||||||| ||||| | |
Sbjct 257954 CGCTCTCCTACCACTTGCA-ATAAATTGCAAATCCGCAGCTTCGG----TAACTGGCTTA 258008
Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290
|||||| ||||| || |||| | | ||| || |||||||||||||||| ||||| ||
Sbjct 258009 GCCCCGTTACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAA 258068
Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350
|||||||||||| |||||||| ||||| ||| | || |||| || |||||||||
Sbjct 258069 TGATGGCTGCTTCTAAGCCAACATCCTGACTGTTTTAGCCTTCCCACTTCGTTTCCCACT 258128
Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398
|| || |||||| ||||||||| | |||||| |||||||||||
Sbjct 258129 TAGCCA-ATTTTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 258175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177422665216
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