Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq8549 208 2e-51 seq8424 194 4e-47 seq6993 190 5e-46 seq11968 185 2e-44 seq7320 178 3e-42 seq10654 176 1e-41 seq9910 176 1e-41 >seq8549 Length=2370 Score = 208 bits (230), Expect = 2e-51 Identities = 295/408 (72%), Gaps = 14/408 (3%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||| || |||| |||| |||||| ||| ||||||| | || || | | | | Sbjct 217 CGACTACCCCCTTCGGGCTCGTCTTAGGGGCCGGCTCACCCTGCGCGGATTAGCCTTGCG 276 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | ||||||||||| |||||| ||| || ||||| | ||||||||||| || Sbjct 277 CAGGAACCCTTGGTCTTTCGGCGAGAGGGCATCTCACCCTCTTTATCGCTACTCATGTCT 336 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTG-ACACG 178 |||||| |||| | | |||||| || || | ||| | ||||||| | || Sbjct 337 GCATTCGCACTTCCGATACCTCCACGACCCATT-ACCAGATCGCTTCACAGGCGTACGGA 395 Query 179 ACGCTCCCCTACC-CAACCACACAGGTTGCCAC----AGCTTCGGCGGATAACTTAAGCC 233 ||||||| ||||| | ||| || | ||| |||||||| | | ||| |||| Sbjct 396 ACGCTCCGCTACCGCGTGTACAAAG-TACACACCCTAAGCTTCGGTGCGTGTCTTGAGCC 454 Query 234 CCGCTACATTATCGGCGCGGAATCACTTG-----ACCAGTGAGCTATTACGCACTCTTTC 288 ||| ||||| ||| ||| ||| | |||| ||||||||||| |||||| ||||| Sbjct 455 CCGTTACATCTTCGCCGCAGAAACCCTTGTTTAGACCAGTGAGCTGTTACGCTTTCTTTA 514 Query 289 AAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCA 348 ||||||||||||||| ||||||||||||||||||| | | | ||||||| |||||||| Sbjct 515 AAGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTTTTGGGATTTCCACATGCTTTCCCA 574 Query 349 CTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 || || ||| |||| ||| ||||||||| | || ||||||||||||| Sbjct 575 CTTAGACACGACTTGGGGACCTTAGCTGTAGGTCAGGGCTGTTTCCCT 622 >seq8424 Length=263062 Score = 194 bits (214), Expect = 4e-47 Identities = 293/413 (71%), Gaps = 23/413 (6%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||| || |||| |||| |||||| ||| || |||| | |||| | ||| | Sbjct 260460 CGACTACCCCCTTCGGGCTCGTCTTAGGGGCCGGCTTACCCTGCTCAGATTAGCTTTAAG 260519 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCCT 119 | |||||||||||| |||||| ||| || ||||| | | ||||||||||| || Sbjct 260520 CAGGAACCCTTGGAATTTCGGCGAGAGGGCATCTCACCCTCTTAATCGCTACTCATGTCT 260579 Query 120 GCATTCTCACTCGCATCAACTCCA----CCACACAG-TCACCCGGCAGCTTCACCA-CTG 173 |||||| |||| | | ||||| || ||| | || ||| ||||| || Sbjct 260580 GCATTCGCACTTCCGATACCTCCAGAGCCCTCACGGGTCTCCC------TTCACTGGCTT 260633 Query 174 ACACGACGCTCCCCTACCCAACCACA-----CAGGTTGCCACAGCTTCGGCGGATAACTT 228 ||| ||||||| ||||| | | || | || |||||||| | || ||| Sbjct 260634 ACAGAACGCTCCGCTACCGCTCGTGATTGCTCACGAACCCTAAGCTTCGGTGTATGGCTT 260693 Query 229 AAGCCCCGCTACATTATCGGCGCGGAATCACTT-----GACCAGTGAGCTATTACGCACT 283 ||||||| |||||| ||||||| | | ||| |||||||||||| |||||| | Sbjct 260694 TAGCCCCGTTACATTTTCGGCGCAAAGACCCTTATTTAGACCAGTGAGCTGTTACGCTTT 260753 Query 284 CTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTT 343 |||| || |||||||||||| ||||||||||||||||||| | | || |||||| ||| Sbjct 260754 CTTTAAATGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTTTTGGAAATCCCACATGCTT 260813 Query 344 TCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 ||||||| ||| | |||| ||| ||||||||| | | ||||||||||||| Sbjct 260814 TCCCACTTAGTGATGACTTGGGGACCTTAGCTGTAGGTTAGGGCTGTTTCCCT 260866 >seq6993 Length=5165 Score = 190 bits (210), Expect = 5e-46 Identities = 290/400 (73%), Gaps = 10/400 (3%) Strand=Plus/Minus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAAC-TTGACCCT 62 |||||| | || ||||||||||||| ||||||||||| | | || ||| |||| | Sbjct 2051 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACCCTGCTCCGATGAACGTTGAACAG 1992 Query 63 GGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGC 121 | |||| | || | | ||||| |||| || |||||| | ||||||||||| | || Sbjct 1991 GAAACCTTGGGCTTA-CGGCGTGCGGGCTTTTCACCCGCATTATCGCTACTCATGTCAGC 1933 Query 122 ATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGA 179 |||| |||| | || | ||||| || | | || | || |||||| || ||| | Sbjct 1932 ATTCGCACTTCTGAT-ACCTCCAGCATCCTTT-ACAAGACACCTTCACAGGCTTACAGAA 1875 Query 180 CGCTCCCCTACCCAA-CCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCGCT 238 ||||| |||||| | || | | | || ||||||||| | | |||| |||||| | Sbjct 1874 CGCTCTCCTACCATATCCTTGCGGATATCCGCAGCTTCGGTGACTGGCTTA-GCCCCGTT 1816 Query 239 ACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCT 298 |||| || |||| | | ||| || |||||||||||||||| ||||| |||||||||| Sbjct 1815 ACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAAGGATGGCT 1756 Query 299 GCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACC 358 ||||| |||||||||||||| ||| | || |||| || ||| ||||| || || Sbjct 1755 GCTTCTAAGCCAACCTCCTGACTGTTTTAGCCTTCCCACTTCGTTTTCCACTTAGCCA-A 1697 Query 359 ACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 ||| ||| ||||||||| | |||||| ||||||||||| Sbjct 1696 TCTTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 1657 >seq11968 Length=3642 Score = 185 bits (204), Expect = 2e-44 Identities = 291/410 (71%), Gaps = 20/410 (5%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| ||| || |||| | ||||| ||||| || Sbjct 2681 CGACTACGCCTCTCGGCCTCGCCTTAGGGACCGGCTAACCCTGCGCAGATTAACTTTACG 2622 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCC-GTCACACGCTACTCATGCCT 119 | |||||||||||| ||||| | | || ||| | || || |||| ||||| Sbjct 2621 CAGGAACCCTTGGACTTACGGCGACAGTGTCTCTCACACTGTTTGTCGTTACTTATGCCA 2562 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGC-TTCACCA-CTGACAC 177 ||||||||||| || | ||||| | | |||| | | | ||||| || | Sbjct 2561 GCATTCTCACTTCCAATACCTCCAGG-CGCCCTCACGGGTCGCCCTTCACAGGCTTATGG 2503 Query 178 GACGCTCCCCTACCCAACCACACAGGTTGCCAC--AGCTTCGGCGGATAACTTAAGCCCC 235 ||||||| ||||| | || | | | | ||||||||| | ||| |||||| Sbjct 2502 AACGCTCCGCTACCG---CGCATTGCTGCGCCCTAAGCTTCGGCTCGTGGCTTGAGCCCC 2446 Query 236 GCTACATTATCGGCGCGGAATCACTT-----GACCAGTGAGCTATTACGCACTCTTTCAA 290 | ||||| ||||||| | | ||| |||||||||||| |||||| ||||| || Sbjct 2445 GTTACATCTTCGGCGCAAAGACCCTTATTTAGACCAGTGAGCTGTTACGCTTTCTTTAAA 2386 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 |||||||||| ||| |||||||||||| | | | | |||||||||||||||| Sbjct 2385 TGATGGCTGCT------CCACCCTCCTGGTTGTTTTGGGATCCTCACATCCTTTCCCACT 2332 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || ||| | |||||||||||||||| | || ||| ||||||||||||| Sbjct 2331 TAGCCACGAATTAGGGGCCTTAGCTGTAGGTCCGGGTTGTTTCCCTCTCG 2282 >seq7320 Length=4144 Score = 178 bits (196), Expect = 3e-42 Identities = 290/405 (72%), Gaps = 17/405 (4%) Strand=Plus/Minus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63 |||||| | || ||||| ||||||| ||||||||||| | || || ||| | | | | Sbjct 3121 CTACGCATCTCTGCCTCACCTTAGGGGCCGACTCACCCTGCGCCGATGAACGTTGCGCAG 3062 Query 64 GAACCCTTGGATAATCGGCGGACGGGA----TTCCCACCCGTCACACGCTACTCATGCCT 119 ||| |||||| |||||| |||| ||| | ||| | | ||||||||||| | Sbjct 3061 GAAACCTTGGGCTTTCGGCGA--GGGAGCTTTTCACTCCCTTTAT-CGCTACTCATGTCA 3005 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 |||||| |||| | || | ||||| || | |||| || |||| | | ||| Sbjct 3004 GCATTCGCACTTCTGAT-ACCTCCAGCATTCC-TCACAGAACACCTTCGCAGGCCTACAG 2947 Query 178 GACGCTCCCCTACCCAACCAC---ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCC 234 |||||| |||||| || | || || || ||||||||| |||| |||| Sbjct 2946 AACGCTCTCCTACCATACTAGTAAACTAGTATCCGCAGCTTCGGTTACGTGCTTA-GCCC 2888 Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGAT 294 || ||||| || |||| | | ||| ||||||||||||||||||| ||||| || ||| Sbjct 2887 CGTTACATCTTCCGCGCAGGACGACTCGACCAGTGAGCTATTACGCTTTCTTTAAATGAT 2828 Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGT 354 ||||||||| |||||||| |||||| |||||| || |||| || ||| ||||| || Sbjct 2827 GGCTGCTTCTAAGCCAACATCCTGGCTGTCTATGCCTTCCCACTTCGTTTTCCACTTAG- 2769 Query 355 CACCAC-TTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 ||| | |||||| ||||||||| | |||||| ||||||||||| Sbjct 2768 CACGTCATTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 2724 >seq10654 Length=1634 Score = 176 bits (194), Expect = 1e-41 Identities = 292/408 (72%), Gaps = 23/408 (6%) Strand=Plus/Minus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63 |||||| | || ||||||||||||| ||||||||||| || || ||| | | | Sbjct 787 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACCCTACGCCGATGAACGTTGCGTAG 728 Query 64 GAACCCTTG-GATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCCTGC 121 ||| ||||| | | | ||||| ||| || ||||| | |||||||||||| | || Sbjct 727 GAAACCTTGCGCTTA-CGGCGAGGGGGCTTTTCACCCCCTTTAACGCTACTCATGTCAGC 669 Query 122 ATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGA 179 |||| |||| | || || || ||| | || ||| |||| |||||| || ||| | Sbjct 668 ATTCGCACTTCTGAT--ACCTCAGCACCC-GTTACCAGGCACCTTCACAGGCTTACAGAA 612 Query 180 CGCTCCCCTACC-CAACCACACAGGTTGCCA-----CAGCTTCGGCGGATAACT---TAA 230 ||||| |||||| | || | | |||| | ||||||||| ||||| | | Sbjct 611 CGCTCTCCTACCACTTGCA-ATAAATTGCAAATCCGCAGCTTCGG----TAACTGGCTTA 557 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| ||||| || |||| | | ||| || |||||||||||||||| ||||| || Sbjct 556 GCCCCGTTACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAA 497 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 |||||||||||| |||||||| ||||| ||| | || |||| || ||||||||| Sbjct 496 TGATGGCTGCTTCTAAGCCAACATCCTGACTGTTTTAGCCTTCCCACTTCGTTTCCCACT 437 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || || |||||| ||||||||| | |||||| ||||||||||| Sbjct 436 TAGCCA-ATTTTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 390 >seq9910 Length=308115 Score = 176 bits (194), Expect = 1e-41 Identities = 292/408 (72%), Gaps = 23/408 (6%) Strand=Plus/Plus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63 |||||| | || ||||||||||||| ||||||||||| || || ||| | | | Sbjct 257778 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACCCTACGCCGATGAACGTTGCGTAG 257837 Query 64 GAACCCTTG-GATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCCTGC 121 ||| ||||| | | | ||||| ||| || ||||| | |||||||||||| | || Sbjct 257838 GAAACCTTGCGCTTA-CGGCGAGGGGGCTTTTCACCCCCTTTAACGCTACTCATGTCAGC 257896 Query 122 ATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGA 179 |||| |||| | || || || ||| | || ||| |||| |||||| || ||| | Sbjct 257897 ATTCGCACTTCTGAT--ACCTCAGCACCC-GTTACCAGGCACCTTCACAGGCTTACAGAA 257953 Query 180 CGCTCCCCTACC-CAACCACACAGGTTGCCA-----CAGCTTCGGCGGATAACT---TAA 230 ||||| |||||| | || | | |||| | ||||||||| ||||| | | Sbjct 257954 CGCTCTCCTACCACTTGCA-ATAAATTGCAAATCCGCAGCTTCGG----TAACTGGCTTA 258008 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| ||||| || |||| | | ||| || |||||||||||||||| ||||| || Sbjct 258009 GCCCCGTTACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAA 258068 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 |||||||||||| |||||||| ||||| ||| | || |||| || ||||||||| Sbjct 258069 TGATGGCTGCTTCTAAGCCAACATCCTGACTGTTTTAGCCTTCCCACTTCGTTTCCCACT 258128 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || || |||||| ||||||||| | |||||| ||||||||||| Sbjct 258129 TAGCCA-ATTTTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 258175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177422665216