Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq9910 217 1e-54 seq13862 174 1e-41 seq7320 168 6e-40 seq6860 95.1 1e-17 >seq9910 Length=308115 Score = 217 bits (240), Expect = 1e-54 Identities = 144/160 (90%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || |||||||||||||||| ||||||| |||| |||||||||||||| Sbjct 260016 CGAGTTGCAGCCTGCAATCCGGACTACGATCGGCTTTCTGAGATTGGCTCCCCCTCGCGG 260075 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 |||||| | ||||||| |||||||||| |||||||||||||| ||||||||||||| Sbjct 260076 GTTGGCAACTCTCTGTACCGACCATTGTATTACGTGTGAAGCCCTGGCCATAAGGGCCAT 260135 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||||||||||||||||||||||||||||| Sbjct 260136 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 260175 >seq13862 Length=422 Score = 174 bits (192), Expect = 1e-41 Identities = 108/116 (93%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||| Sbjct 116 TCGAGTTGCAGACTACGATCCGGACTACGATGCATTTTCTGGGATTAGCTCCACCTCGCG 57 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGG 116 | ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 56 GCTTGGCAACCCTCTGTATGCACCATTGTATGACGTGTGAAGCCCTACCCATAAGG 1 >seq7320 Length=4144 Score = 168 bits (186), Expect = 6e-40 Identities = 136/162 (84%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATAC-ACTTTCTGGGATTAGCTCCCCCTCGC 59 |||||||||||| || ||||| ||| || || ||||| | ||||||||||| ||||| Sbjct 849 TCGAGTTGCAGAGAACGATCCGAACT--GAGACGACTTTTGGAGATTAGCTCCCTCTCGC 792 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 | | |||| |||| ||||| |||||||| ||||||| ||||| || | |||||||| Sbjct 791 GAGGTGGCTGCCCACTGTAGTCGCCATTGTAGCACGTGTGTAGCCCAACGCGTAAGGGCC 732 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||||||||||||||||||||||||||||||| Sbjct 731 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 690 >seq6860 Length=6169 Score = 95.1 bits (104), Expect = 1e-17 Identities = 120/163 (74%), Gaps = 14/163 (9%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACA-CTTTCTGGGATTAGCTCCCCCTCGC 59 |||||||||||| ||||||| ||| || || |||| || |||| || || || Sbjct 2227 TCGAGTTGCAGAGCCCAATCCGAACT--GAGACGGCTTTTTGAGATTTGCGAAGGCTTGC 2170 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 | || ||| ||||| |||||| ||||||| ||||| | |||||||| Sbjct 2169 GCCTTTGCGTCCCTC----------ATTGTAGCACGTGTGTAGCCCACCTTGTAAGGGCC 2120 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTC-CGGTTTGTCAC 161 ||||||||||||||||||||||||||||||| ||| || |||| Sbjct 2119 ATGAGGACTTGACGTCATCCCCACCTTCCTCGCGGCTTATCAC 2077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415939312230