Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01001821.1
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
seq9910 217 1e-54
seq13862 174 1e-41
seq7320 168 6e-40
seq6860 95.1 1e-17
>seq9910
Length=308115
Score = 217 bits (240), Expect = 1e-54
Identities = 144/160 (90%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || |||||||||||||||| ||||||| |||| ||||||||||||||
Sbjct 260016 CGAGTTGCAGCCTGCAATCCGGACTACGATCGGCTTTCTGAGATTGGCTCCCCCTCGCGG 260075
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
|||||| | ||||||| |||||||||| |||||||||||||| |||||||||||||
Sbjct 260076 GTTGGCAACTCTCTGTACCGACCATTGTATTACGTGTGAAGCCCTGGCCATAAGGGCCAT 260135
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
||||||||||||||||||||||||||||||||||||||||
Sbjct 260136 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 260175
>seq13862
Length=422
Score = 174 bits (192), Expect = 1e-41
Identities = 108/116 (93%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60
|||||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||
Sbjct 116 TCGAGTTGCAGACTACGATCCGGACTACGATGCATTTTCTGGGATTAGCTCCACCTCGCG 57
Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGG 116
| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 56 GCTTGGCAACCCTCTGTATGCACCATTGTATGACGTGTGAAGCCCTACCCATAAGG 1
>seq7320
Length=4144
Score = 168 bits (186), Expect = 6e-40
Identities = 136/162 (84%), Gaps = 3/162 (2%)
Strand=Plus/Minus
Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATAC-ACTTTCTGGGATTAGCTCCCCCTCGC 59
|||||||||||| || ||||| ||| || || ||||| | ||||||||||| |||||
Sbjct 849 TCGAGTTGCAGAGAACGATCCGAACT--GAGACGACTTTTGGAGATTAGCTCCCTCTCGC 792
Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119
| | |||| |||| ||||| |||||||| ||||||| ||||| || | ||||||||
Sbjct 791 GAGGTGGCTGCCCACTGTAGTCGCCATTGTAGCACGTGTGTAGCCCAACGCGTAAGGGCC 732
Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 690
>seq6860
Length=6169
Score = 95.1 bits (104), Expect = 1e-17
Identities = 120/163 (74%), Gaps = 14/163 (9%)
Strand=Plus/Minus
Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACA-CTTTCTGGGATTAGCTCCCCCTCGC 59
|||||||||||| ||||||| ||| || || |||| || |||| || || ||
Sbjct 2227 TCGAGTTGCAGAGCCCAATCCGAACT--GAGACGGCTTTTTGAGATTTGCGAAGGCTTGC 2170
Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119
| || ||| ||||| |||||| ||||||| ||||| | ||||||||
Sbjct 2169 GCCTTTGCGTCCCTC----------ATTGTAGCACGTGTGTAGCCCACCTTGTAAGGGCC 2120
Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTC-CGGTTTGTCAC 161
||||||||||||||||||||||||||||||| ||| || ||||
Sbjct 2119 ATGAGGACTTGACGTCATCCCCACCTTCCTCGCGGCTTATCAC 2077
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 415939312230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |