Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq6860 239 7e-61 seq9910 230 4e-58 seq7320 172 9e-41 >seq6860 Length=6169 Score = 239 bits (264), Expect = 7e-61 Identities = 229/291 (79%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| |||||||||||||| | | |||| | ||||||||||||||||||| Sbjct 1686 CCCACGCTTTCGTGCCTCAGCGTCAGTACCGGACCAGTGAGCCGCCTTCGCCACTGGTGT 1627 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || | || ||||||||| |||||||| |||||| || | |||| | ||||| | | || Sbjct 1626 TCTTGCGAATATCTACGAATTTCACCTCTACACTCGCAGTTCCACTCACCTCTTCCGGAC 1567 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGG-GTTGAGCCCATAGTTTTCACATCTGAC 179 |||||| |||| ||||| |||| | ||| ||||||| | | |||||| ||||| Sbjct 1566 TCAAGATCCTCAGTATCAAAGGCAGT-TCTGGAGTTGAGCTCCAGGATTTCACCCCTGAC 1508 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || ||||||||| | |||||||| |||| | | |||| |||||| ||| ||| | Sbjct 1507 TTAAAGACCCGCCTACGCACCCTTTACGCCCAGTGATTCCGAGCAACGCTAGCCCCCTTC 1448 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||||||||||||| ||||||||| ||||||||| | |||| Sbjct 1447 GTATTACCGCGGCTGCTGGCACGAAGTTAGCCGGGGCTTATTCTTGCGGTA 1397 >seq9910 Length=308115 Score = 230 bits (254), Expect = 4e-58 Identities = 225/290 (78%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| || | ||||||||| |||||| |||||||||| ||||| Sbjct 260574 CCCACGCTTTCGTGCATGAGCGTCAGTACAGGTCCAGGGGATTGCCTTCGCCATCGGTGT 260633 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 ||||||| ||||||||||||||||| ||||||| ||||||||| ||||| | | || Sbjct 260634 TCCTCCGCATATCTACGCATTTCACTGCTACACGCGGAATTCCATCCCCCTCTACCGTAC 260693 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || | |||| ||||||||| |||||||||| | ||||||||||| || Sbjct 260694 TCTAGCCATGCAGTCACAAATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCTGTCT 260753 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | | |||||| | | | |||||| |||| ||| |||| ||||||| || |||||| Sbjct 260754 TACATAACCGCCTGCGCACGCTTTACGCCCAGTAATTCCGATTAACGCTCGCACCCTACG 260813 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||||||||||||| |||||||| | |||| Sbjct 260814 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTACGGTA 260863 >seq7320 Length=4144 Score = 172 bits (190), Expect = 9e-41 Identities = 203/272 (75%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCC-AGCAATCCGCCTTCGCCACTGGTG 59 |||||||||||| || | ||||||| | | | ||| || | |||||||||| |||| Sbjct 281 CCCACGCTTTCGTGCATGAGCGTCAAT-ATTATCCCAGGGGGCTGCCTTCGCCATTGGTA 223 Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119 ||||||| || |||||||||||||| ||||||| ||||||| ||||| | Sbjct 222 TTCCTCCACATCTCTACGCATTTCACTGCTACACGTGGAATTCTACCCCCCTCTGACATA 163 Query 120 CTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGAC 179 || || | ||||||||| |||| ||||||| | | ||||||||||||| Sbjct 162 TTCTAGCTTGATAGTTTCAAACGCAGTTCCCAAGTTGAGCTCGGGGATTTCACATCTGAC 103 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || | |||||| | | | |||||| |||| ||| |||| ||||||| || ||||| Sbjct 102 TTATCAGGCCGCCTGCGCACGCTTTACGCCCAGTAATTCCGATTAACGCTCGCACCCTAC 43 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCC 271 |||||||||||||||||||||||||||||||| Sbjct 42 GTATTACCGCGGCTGCTGGCACGTAGTTAGCC 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828679091289