Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01001844.1
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
seq6860 239 7e-61
seq9910 230 4e-58
seq7320 172 9e-41
>seq6860
Length=6169
Score = 239 bits (264), Expect = 7e-61
Identities = 229/291 (79%), Gaps = 2/291 (1%)
Strand=Plus/Minus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
|||||||||||| |||||||||||||| | | |||| | |||||||||||||||||||
Sbjct 1686 CCCACGCTTTCGTGCCTCAGCGTCAGTACCGGACCAGTGAGCCGCCTTCGCCACTGGTGT 1627
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|| | || ||||||||| |||||||| |||||| || | |||| | ||||| | | ||
Sbjct 1626 TCTTGCGAATATCTACGAATTTCACCTCTACACTCGCAGTTCCACTCACCTCTTCCGGAC 1567
Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGG-GTTGAGCCCATAGTTTTCACATCTGAC 179
|||||| |||| ||||| |||| | ||| ||||||| | | |||||| |||||
Sbjct 1566 TCAAGATCCTCAGTATCAAAGGCAGT-TCTGGAGTTGAGCTCCAGGATTTCACCCCTGAC 1508
Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239
|| ||||||||| | |||||||| |||| | | |||| |||||| ||| ||| |
Sbjct 1507 TTAAAGACCCGCCTACGCACCCTTTACGCCCAGTGATTCCGAGCAACGCTAGCCCCCTTC 1448
Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
||||||||||||||||||||||| ||||||||| ||||||||| | ||||
Sbjct 1447 GTATTACCGCGGCTGCTGGCACGAAGTTAGCCGGGGCTTATTCTTGCGGTA 1397
>seq9910
Length=308115
Score = 230 bits (254), Expect = 4e-58
Identities = 225/290 (78%), Gaps = 0/290 (0%)
Strand=Plus/Plus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
|||||||||||| || | ||||||||| |||||| |||||||||| |||||
Sbjct 260574 CCCACGCTTTCGTGCATGAGCGTCAGTACAGGTCCAGGGGATTGCCTTCGCCATCGGTGT 260633
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
||||||| ||||||||||||||||| ||||||| ||||||||| ||||| | | ||
Sbjct 260634 TCCTCCGCATATCTACGCATTTCACTGCTACACGCGGAATTCCATCCCCCTCTACCGTAC 260693
Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180
|| || | |||| ||||||||| |||||||||| | ||||||||||| ||
Sbjct 260694 TCTAGCCATGCAGTCACAAATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCTGTCT 260753
Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240
| | | |||||| | | | |||||| |||| ||| |||| ||||||| || ||||||
Sbjct 260754 TACATAACCGCCTGCGCACGCTTTACGCCCAGTAATTCCGATTAACGCTCGCACCCTACG 260813
Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||||||||||||||||||| |||||||| | ||||
Sbjct 260814 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTACGGTA 260863
>seq7320
Length=4144
Score = 172 bits (190), Expect = 9e-41
Identities = 203/272 (75%), Gaps = 2/272 (1%)
Strand=Plus/Minus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCC-AGCAATCCGCCTTCGCCACTGGTG 59
|||||||||||| || | ||||||| | | | ||| || | |||||||||| ||||
Sbjct 281 CCCACGCTTTCGTGCATGAGCGTCAAT-ATTATCCCAGGGGGCTGCCTTCGCCATTGGTA 223
Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119
||||||| || |||||||||||||| ||||||| ||||||| ||||| |
Sbjct 222 TTCCTCCACATCTCTACGCATTTCACTGCTACACGTGGAATTCTACCCCCCTCTGACATA 163
Query 120 CTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGAC 179
|| || | ||||||||| |||| ||||||| | | |||||||||||||
Sbjct 162 TTCTAGCTTGATAGTTTCAAACGCAGTTCCCAAGTTGAGCTCGGGGATTTCACATCTGAC 103
Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239
|| | |||||| | | | |||||| |||| ||| |||| ||||||| || |||||
Sbjct 102 TTATCAGGCCGCCTGCGCACGCTTTACGCCCAGTAATTCCGATTAACGCTCGCACCCTAC 43
Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCC 271
||||||||||||||||||||||||||||||||
Sbjct 42 GTATTACCGCGGCTGCTGGCACGTAGTTAGCC 11
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 828679091289
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |