Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01001851.1
Length=140
Score E
Sequences producing significant alignments: (Bits) Value
seq6993 172 4e-41
seq12938 136 3e-30
seq9910 136 3e-30
seq8424 134 1e-29
seq6860 129 4e-28
seq11968 122 6e-26
seq7320 120 2e-25
>seq6993
Length=5165
Score = 172 bits (190), Expect = 4e-41
Identities = 122/140 (87%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
||||||||||||||||||||||||||||||||| || | |||||||||||||||| |||
Sbjct 3102 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTTCTG 3043
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120
||||||||||||||| | |||| ||||||| | |||||| ||| ||||||||||||||
Sbjct 3042 CTTTCGCATCTGCTCGACTTGTCAGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTAT 2983
Query 121 CACTACGATTTCCGACCGTA 140
| ||||| ||||||||||
Sbjct 2982 CGTCACGATGTCCGACCGTA 2963
>seq12938
Length=19539
Score = 136 bits (150), Expect = 3e-30
Identities = 115/141 (82%), Gaps = 8/141 (6%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
||||||||||||||||||||||||||||||||| || | |||||||||||||| |||||
Sbjct 13621 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTA 13562
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120
|||||| | |||||| | |||| | ||||||| | |||| | |||||||| || |||
Sbjct 13561 CTTTCGTACCTGCTCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACT-- 13504
Query 121 CACTACG----ATTTCCGACC 137
||||| ||||||||||
Sbjct 13503 --CTACGCGTGATTTCCGACC 13485
>seq9910
Length=308115
Score = 136 bits (150), Expect = 3e-30
Identities = 115/141 (82%), Gaps = 8/141 (6%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
||||||||||||||||||||||||||||||||| || | |||||||||||||| |||||
Sbjct 256677 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTA 256736
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120
|||||| | |||||| | |||| | ||||||| | |||| | |||||||| || |||
Sbjct 256737 CTTTCGTACCTGCTCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACT-- 256794
Query 121 CACTAC----GATTTCCGACC 137
|||| |||||||||||
Sbjct 256795 --CTACGCGTGATTTCCGACC 256813
>seq8424
Length=263062
Score = 134 bits (148), Expect = 1e-29
Identities = 113/139 (81%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 259526 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGACCGA 259585
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120
|||||| ||||||| | |||| ||||||| ||| ||| ||| ||||||||||||
Sbjct 259586 CTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCA 259645
Query 121 CACTACGATTTCCGACCGT 139
|||||||||||||||
Sbjct 259646 GCGAACGATTTCCGACCGT 259664
>seq6860
Length=6169
Score = 129 bits (142), Expect = 4e-28
Identities = 112/139 (81%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 5863 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGACCGA 5804
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120
|||||| ||||||| | ||||| ||||||| ||| ||| ||||||||||| |||
Sbjct 5803 CTTTCGTCTCTGCTCGACTTGTTAGTCTCGCAGTCAGGCAGGCTTTTGCCATTATACTCG 5744
Query 121 CACTACGATTTCCGACCGT 139
|||||||||||||||
Sbjct 5743 ACGAACGATTTCCGACCGT 5725
>seq11968
Length=3642
Score = 122 bits (134), Expect = 6e-26
Identities = 112/141 (79%), Gaps = 8/141 (6%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
||||||||||||||||||||||||||| |||| | | |||||||||||||| |||||
Sbjct 3632 TACCTTTTATCCGTTGAGCGATGGCCCGTCCACGTAGAACCACCGGATCACTAAGACCTA 3573
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120
|||||| | |||||| | |||| | ||||||| | |||| | |||||||| || |||
Sbjct 3572 CTTTCGTACCTGCTCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACT-- 3515
Query 121 CACTACG----ATTTCCGACC 137
||||| ||||||||||
Sbjct 3514 --CTACGCGTGATTTCCGACC 3496
>seq7320
Length=4144
Score = 120 bits (132), Expect = 2e-25
Identities = 92/109 (84%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 32 ATTCATAGCCACCGGATCACTATGACCTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGC 91
|| || | |||||||||||||||| |||||||||||| |||||| | |||| | ||||||
Sbjct 4144 ATACAGAACCACCGGATCACTATGTCCTGCTTTCGCACCTGCTCGACTTGTCGGTCTCGC 4085
Query 92 AATCAAGCACACTTTTGCCATTGCACTATCACTACGATTTCCGACCGTA 140
| | |||||| |||||||||||||||| | |||||| ||||||||||
Sbjct 4084 AGTTAAGCACGCTTTTGCCATTGCACTTTAGGTACGATGTCCGACCGTA 4036
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 351950305300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |