Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq6993 172 4e-41 seq12938 136 3e-30 seq9910 136 3e-30 seq8424 134 1e-29 seq6860 129 4e-28 seq11968 122 6e-26 seq7320 120 2e-25 >seq6993 Length=5165 Score = 172 bits (190), Expect = 4e-41 Identities = 122/140 (87%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||||| ||| Sbjct 3102 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTTCTG 3043 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 ||||||||||||||| | |||| ||||||| | |||||| ||| |||||||||||||| Sbjct 3042 CTTTCGCATCTGCTCGACTTGTCAGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTAT 2983 Query 121 CACTACGATTTCCGACCGTA 140 | ||||| |||||||||| Sbjct 2982 CGTCACGATGTCCGACCGTA 2963 >seq12938 Length=19539 Score = 136 bits (150), Expect = 3e-30 Identities = 115/141 (82%), Gaps = 8/141 (6%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||| ||||| Sbjct 13621 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTA 13562 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| | |||||| | |||| | ||||||| | |||| | |||||||| || ||| Sbjct 13561 CTTTCGTACCTGCTCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACT-- 13504 Query 121 CACTACG----ATTTCCGACC 137 ||||| |||||||||| Sbjct 13503 --CTACGCGTGATTTCCGACC 13485 >seq9910 Length=308115 Score = 136 bits (150), Expect = 3e-30 Identities = 115/141 (82%), Gaps = 8/141 (6%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||| ||||| Sbjct 256677 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTA 256736 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| | |||||| | |||| | ||||||| | |||| | |||||||| || ||| Sbjct 256737 CTTTCGTACCTGCTCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACT-- 256794 Query 121 CACTAC----GATTTCCGACC 137 |||| ||||||||||| Sbjct 256795 --CTACGCGTGATTTCCGACC 256813 >seq8424 Length=263062 Score = 134 bits (148), Expect = 1e-29 Identities = 113/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 259526 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGACCGA 259585 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| ||||||| ||| ||| ||| |||||||||||| Sbjct 259586 CTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCA 259645 Query 121 CACTACGATTTCCGACCGT 139 ||||||||||||||| Sbjct 259646 GCGAACGATTTCCGACCGT 259664 >seq6860 Length=6169 Score = 129 bits (142), Expect = 4e-28 Identities = 112/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 5863 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGACCGA 5804 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | ||||| ||||||| ||| ||| ||||||||||| ||| Sbjct 5803 CTTTCGTCTCTGCTCGACTTGTTAGTCTCGCAGTCAGGCAGGCTTTTGCCATTATACTCG 5744 Query 121 CACTACGATTTCCGACCGT 139 ||||||||||||||| Sbjct 5743 ACGAACGATTTCCGACCGT 5725 >seq11968 Length=3642 Score = 122 bits (134), Expect = 6e-26 Identities = 112/141 (79%), Gaps = 8/141 (6%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||| |||| | | |||||||||||||| ||||| Sbjct 3632 TACCTTTTATCCGTTGAGCGATGGCCCGTCCACGTAGAACCACCGGATCACTAAGACCTA 3573 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| | |||||| | |||| | ||||||| | |||| | |||||||| || ||| Sbjct 3572 CTTTCGTACCTGCTCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACT-- 3515 Query 121 CACTACG----ATTTCCGACC 137 ||||| |||||||||| Sbjct 3514 --CTACGCGTGATTTCCGACC 3496 >seq7320 Length=4144 Score = 120 bits (132), Expect = 2e-25 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 32 ATTCATAGCCACCGGATCACTATGACCTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGC 91 || || | |||||||||||||||| |||||||||||| |||||| | |||| | |||||| Sbjct 4144 ATACAGAACCACCGGATCACTATGTCCTGCTTTCGCACCTGCTCGACTTGTCGGTCTCGC 4085 Query 92 AATCAAGCACACTTTTGCCATTGCACTATCACTACGATTTCCGACCGTA 140 | | |||||| |||||||||||||||| | |||||| |||||||||| Sbjct 4084 AGTTAAGCACGCTTTTGCCATTGCACTTTAGGTACGATGTCCGACCGTA 4036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351950305300