Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq6993 192 6e-47 seq8424 150 2e-34 seq12938 141 9e-32 seq9910 141 9e-32 seq7320 134 1e-29 seq11968 129 6e-28 seq6860 120 3e-25 >seq6993 Length=5165 Score = 192 bits (212), Expect = 6e-47 Identities = 136/156 (87%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||| Sbjct 3090 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTTCTGCTTTCGCATCTG 3031 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| |||| ||||||||| |||| |||||||||||||||||| | |||||||||| Sbjct 3030 CTCGACTTGTCAGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTATCGTCACGATGTC 2971 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| | |||| ||||||| ||||||| ||| Sbjct 2970 CGACCGTAACTAGCGTACCTTCGAACTCCTCCTTTA 2935 >seq8424 Length=263062 Score = 150 bits (166), Expect = 2e-34 Identities = 127/156 (81%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | | |||||||||||||||||||| |||||| ||| Sbjct 259538 GTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 259597 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| |||| ||||||||||| || ||||||||||||||||| | | ||||| || Sbjct 259598 CTCGACTTGTCAGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCAGCGAACGATTTC 259657 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| | ||| ||| ||| || ||||||||| Sbjct 259658 CGACCGTTCTGAGCCCACCATCGCGCGCCTCCGTTA 259693 >seq12938 Length=19539 Score = 141 bits (156), Expect = 9e-32 Identities = 125/156 (80%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| ||||| Sbjct 13609 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTG 13550 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| || ||||||||| |||| |||| |||| || ||| | | ||| || Sbjct 13549 CTCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACTCTACGCGTGATTTC 13490 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||| | | ||| |||||||| ||||||||||| Sbjct 13489 CGACCACGCTGAGCGCACCTTCGTACTCCTCCGTTA 13454 >seq9910 Length=308115 Score = 141 bits (156), Expect = 9e-32 Identities = 125/156 (80%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| ||||| Sbjct 256689 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTG 256748 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| || ||||||||| |||| |||| |||| || ||| | | ||| || Sbjct 256749 CTCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACTCTACGCGTGATTTC 256808 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||| | | ||| |||||||| ||||||||||| Sbjct 256809 CGACCACGCTGAGCGCACCTTCGTACTCCTCCGTTA 256844 >seq7320 Length=4144 Score = 134 bits (148), Expect = 1e-29 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 43 ATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGCTCGAGCCGTCACTCTCGC 102 || ||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| Sbjct 4144 ATACAGAACCACCGGATCACTATGTCCTGCTTTCGCACCTGCTCGACTTGTCGGTCTCGC 4085 Query 103 AGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCCGACCGTGATTAGCTGACC 162 ||| |||| |||| |||||||||||| ||||||||||||||| ||| ||| Sbjct 4084 AGTTAAGCACGCTTTTGCCATTGCACTTTAGGTACGATGTCCGACCGTACCAAGCGTACC 4025 Query 163 TTCGTGCTCCTCCGTTA 179 |||| ||||||||||| Sbjct 4024 TTCGAACTCCTCCGTTA 4008 >seq11968 Length=3642 Score = 129 bits (142), Expect = 6e-28 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||| |||| |||||||||||||||||| ||||| |||||| ||||| Sbjct 3620 GTTGAGCGATGGCCCGTCCACGTAGAACCACCGGATCACTAAGACCTACTTTCGTACCTG 3561 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| || ||||||||| |||| |||| |||| || ||| | | ||| || Sbjct 3560 CTCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACTCTACGCGTGATTTC 3501 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||| | | ||| |||||||| ||||||||||| Sbjct 3500 CGACCACGCTGAGCGCACCTTCGTACTCCTCCGTTA 3465 >seq6860 Length=6169 Score = 120 bits (132), Expect = 3e-25 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | |||||||||||||||||||| |||||| ||| Sbjct 5851 GTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 5792 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| || | ||||||||||| || |||| ||||||| ||| | ||||| || Sbjct 5791 CTCGACTTGTTAGTCTCGCAGTCAGGCAGGCTTTTGCCATTATACTCGACGAACGATTTC 5732 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| | ||| ||| ||| | ||||||||| Sbjct 5731 CGACCGTTCTGAGCCTACCATCGCACGCCTCCGTTA 5696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473530909308