Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01001946.1
Length=179
Score E
Sequences producing significant alignments: (Bits) Value
seq6993 192 6e-47
seq8424 150 2e-34
seq12938 141 9e-32
seq9910 141 9e-32
seq7320 134 1e-29
seq11968 129 6e-28
seq6860 120 3e-25
>seq6993
Length=5165
Score = 192 bits (212), Expect = 6e-47
Identities = 136/156 (87%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||
Sbjct 3090 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTTCTGCTTTCGCATCTG 3031
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||||| |||| ||||||||| |||| |||||||||||||||||| | ||||||||||
Sbjct 3030 CTCGACTTGTCAGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTATCGTCACGATGTC 2971
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
||||||| | |||| ||||||| ||||||| |||
Sbjct 2970 CGACCGTAACTAGCGTACCTTCGAACTCCTCCTTTA 2935
>seq8424
Length=263062
Score = 150 bits (166), Expect = 2e-34
Identities = 127/156 (81%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
|||||||||||||||||||| | | |||||||||||||||||||| |||||| |||
Sbjct 259538 GTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 259597
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||||| |||| ||||||||||| || ||||||||||||||||| | | ||||| ||
Sbjct 259598 CTCGACTTGTCAGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCAGCGAACGATTTC 259657
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
||||||| | ||| ||| ||| || |||||||||
Sbjct 259658 CGACCGTTCTGAGCCCACCATCGCGCGCCTCCGTTA 259693
>seq12938
Length=19539
Score = 141 bits (156), Expect = 9e-32
Identities = 125/156 (80%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| |||||
Sbjct 13609 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTG 13550
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||||| || ||||||||| |||| |||| |||| || ||| | | ||| ||
Sbjct 13549 CTCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACTCTACGCGTGATTTC 13490
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
||||| | | ||| |||||||| |||||||||||
Sbjct 13489 CGACCACGCTGAGCGCACCTTCGTACTCCTCCGTTA 13454
>seq9910
Length=308115
Score = 141 bits (156), Expect = 9e-32
Identities = 125/156 (80%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| |||||
Sbjct 256689 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTG 256748
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||||| || ||||||||| |||| |||| |||| || ||| | | ||| ||
Sbjct 256749 CTCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACTCTACGCGTGATTTC 256808
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
||||| | | ||| |||||||| |||||||||||
Sbjct 256809 CGACCACGCTGAGCGCACCTTCGTACTCCTCCGTTA 256844
>seq7320
Length=4144
Score = 134 bits (148), Expect = 1e-29
Identities = 112/137 (82%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 43 ATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGCTCGAGCCGTCACTCTCGC 102
|| ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||
Sbjct 4144 ATACAGAACCACCGGATCACTATGTCCTGCTTTCGCACCTGCTCGACTTGTCGGTCTCGC 4085
Query 103 AGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCCGACCGTGATTAGCTGACC 162
||| |||| |||| |||||||||||| ||||||||||||||| ||| |||
Sbjct 4084 AGTTAAGCACGCTTTTGCCATTGCACTTTAGGTACGATGTCCGACCGTACCAAGCGTACC 4025
Query 163 TTCGTGCTCCTCCGTTA 179
|||| |||||||||||
Sbjct 4024 TTCGAACTCCTCCGTTA 4008
>seq11968
Length=3642
Score = 129 bits (142), Expect = 6e-28
Identities = 122/156 (78%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||||||||| |||| |||||||||||||||||| ||||| |||||| |||||
Sbjct 3620 GTTGAGCGATGGCCCGTCCACGTAGAACCACCGGATCACTAAGACCTACTTTCGTACCTG 3561
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||||| || ||||||||| |||| |||| |||| || ||| | | ||| ||
Sbjct 3560 CTCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACTCTACGCGTGATTTC 3501
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
||||| | | ||| |||||||| |||||||||||
Sbjct 3500 CGACCACGCTGAGCGCACCTTCGTACTCCTCCGTTA 3465
>seq6860
Length=6169
Score = 120 bits (132), Expect = 3e-25
Identities = 120/156 (77%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
|||||||||||||||||||| | |||||||||||||||||||| |||||| |||
Sbjct 5851 GTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 5792
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||||| || | ||||||||||| || |||| ||||||| ||| | ||||| ||
Sbjct 5791 CTCGACTTGTTAGTCTCGCAGTCAGGCAGGCTTTTGCCATTATACTCGACGAACGATTTC 5732
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
||||||| | ||| ||| ||| | |||||||||
Sbjct 5731 CGACCGTTCTGAGCCTACCATCGCACGCCTCCGTTA 5696
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 473530909308
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |