Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq12938 288 2e-75
seq8424 277 3e-72
seq9910 269 4e-70
seq6993 253 3e-65
seq6860 250 4e-64
>seq12938
Length=19539
Score = 288 bits (318), Expect = 2e-75
Identities = 228/274 (83%), Gaps = 0/274 (0%)
Strand=Plus/Minus
Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61
|||| | | ||| |||||||||| |||||| ||||| |||||| |||||||| |||||
Sbjct 13956 GAGGCGAGTTTCACGCTTAGATGCTTTCAGCGTTTATCTCTTCCACACTTAGCTACCCAG 13897
Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121
| || | |||||| | ||||||| |||||||||| |||||| |||||||||||||||
Sbjct 13896 CGATACCATTGGCATGATAACTGGTCCACCAGAGGTGTGTCCACTCCGGTCCTCTCGTAC 13837
Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181
|| | ||| ||| |||||| || | |||||||| | |||||||||| ||||||||| |
Sbjct 13836 TAGGAGCAGGTCCCCTCAAACTTGCAGCGCCCACGGCAGATAGGGACCAAACTGTCTCAC 13777
Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241
|||||| | |||||||||| ||| ||||||||| ||||||||||| ||||||||||||
Sbjct 13776 GACGTTTTAAACCCAGCTCACGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACC 13717
Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||| |||||||||||||||| ||||||||||||
Sbjct 13716 GACTACAGCCCCAGGATGAGATGAGCCGACATCG 13683
>seq8424
Length=263062
Score = 277 bits (306), Expect = 3e-72
Identities = 222/268 (83%), Gaps = 0/268 (0%)
Strand=Plus/Plus
Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGC 67
|| ||| ||||||||||||||||| ||||||| ||| | ||||| ||| |||||||
Sbjct 259197 GGTTTCCCGCTTAGATGCCTTCAGCGGTTATCCCGTCCGGATATAGCTACCCTGCTATGC 259256
Query 68 ACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGA 127
|||| ||||| ||| |||||||| | |||||||||||||||||||||||| |||
Sbjct 259257 GGCTGGCGCCACAACAGGTCCACCAGAGATCCGTCCATCCCGGTCCTCTCGTACTAGGGA 259316
Query 128 CAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTT 187
||| |||| |||| ||||||| |||||| | |||||||||||||||||||| |||||||
Sbjct 259317 CAGATCCTTTCAATATTCCTACACCCACGGCAGATAGGGACCGAACTGTCTCACGACGTT 259376
Query 188 CTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTC 247
||||||||| ||| ||| || |||||| ||||| ||||| ||||||||||||| || |
Sbjct 259377 CTGAACCCAACTCACGTACCGCTTTAAATGGCGACCAGCCATACCCTTGGGACCTGCTCC 259436
Query 248 AGCCCCAGGATGAGACGAGCCGACATCG 275
|||||||||||| || ||| ||||||||
Sbjct 259437 AGCCCCAGGATGCGATGAGTCGACATCG 259464
>seq9910
Length=308115
Score = 269 bits (298), Expect = 4e-70
Identities = 224/274 (82%), Gaps = 0/274 (0%)
Strand=Plus/Plus
Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61
|||| | | ||| |||||||||| |||||| ||||| |||||| |||||||| |||||
Sbjct 256342 GAGGCGAGTTTCACGCTTAGATGCTTTCAGCGTTTATCTCTTCCACACTTAGCTACCCAG 256401
Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121
| || | |||||| | ||||||| |||||||||| |||||| |||||||||||||||
Sbjct 256402 CGATACCATTGGCATGATAACTGGTCCACCAGAGGTGTGTCCACTCCGGTCCTCTCGTAC 256461
Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181
|| | ||| ||| |||||| || | |||||||| | |||||||||| ||||||||| |
Sbjct 256462 TAGGAGCAGGTCCCCTCAAACTTGCAGCGCCCACGGCAGATAGGGACCAAACTGTCTCAC 256521
Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241
|||||| | |||||||||| ||| || |||||| ||||||||||| ||||||||||||
Sbjct 256522 GACGTTTTAAACCCAGCTCACGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACC 256581
Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
|| ||||||||||||| || | ||||||||||
Sbjct 256582 GGCTACAGCCCCAGGATGTGATGGGCCGACATCG 256615
>seq6993
Length=5165
Score = 253 bits (280), Expect = 3e-65
Identities = 222/274 (81%), Gaps = 2/274 (1%)
Strand=Plus/Minus
Query 3 AGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC 62
||| | | ||| |||||||||| |||||| ||||| ||||| ||||||||| | | ||
Sbjct 3436 AGGCGAGTTTCCCGCTTAGATGCTTTCAGCGGTTATCTCTTCCGAACTTAGCTACTCGGC 3377
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
|||| |||| ||||| | | |||||||||| |||||| ||||||||||||||||
Sbjct 3376 AATGCCACTGGCGTGACAACCGATACACCAGAGGTGTGTCCACTCCGGTCCTCTCGTACT 3317
Query 123 AAGGACAG-CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181
| | ||| || | ||||||| | | |||||||| |||||||||| ||||||||| |
Sbjct 3316 AGGAGCAGGCTTC-CTCAAATCTGCAGCGCCCACGGAAGATAGGGACCAAACTGTCTCAC 3258
Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241
|||||| | |||||||||| ||| ||||||||| ||||||||||| ||||||||||||
Sbjct 3257 GACGTTTTAAACCCAGCTCACGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACC 3198
Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||| |||||||||||||||| ||||||||||||
Sbjct 3197 GACTACAGCCCCAGGATGAGATGAGCCGACATCG 3164
>seq6860
Length=6169
Score = 250 bits (276), Expect = 4e-64
Identities = 209/260 (80%), Gaps = 21/260 (8%)
Strand=Plus/Minus
Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75
||||||||||||||||| ||||||| ||| || ||||| | ||||||
Sbjct 6163 GCTTAGATGCCTTCAGCGGTTATCCCGTCCGTACATAGCTATGC-----TGCACT----- 6114
Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135
||||||||||| || ||||||||||||||||||||| ||||| ||||
Sbjct 6113 -----------GCACCAGAGGTACGTTCATCCCGGTCCTCTCGTACTAGGGACAAATCCT 6065
Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195
|||||| |||| || |||||| | |||||||||||||||||||| |||||||||||||||
Sbjct 6064 CTCAAAATTCCAACACCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTGAACCC 6005
Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255
||||| ||| || ||||||| ||||||||||| |||||||||||||| || |||||||||
Sbjct 6004 AGCTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGACCTGCTCCAGCCCCAG 5945
Query 256 GATGAGACGAGCCGACATCG 275
|||| || ||||||||||||
Sbjct 5944 GATGTGATGAGCCGACATCG 5925
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780686093724
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |