Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq12938 288 2e-75 seq8424 277 3e-72 seq9910 269 4e-70 seq6993 253 3e-65 seq6860 250 4e-64 >seq12938 Length=19539 Score = 288 bits (318), Expect = 2e-75 Identities = 228/274 (83%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| | | ||| |||||||||| |||||| ||||| |||||| |||||||| ||||| Sbjct 13956 GAGGCGAGTTTCACGCTTAGATGCTTTCAGCGTTTATCTCTTCCACACTTAGCTACCCAG 13897 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | || | |||||| | ||||||| |||||||||| |||||| ||||||||||||||| Sbjct 13896 CGATACCATTGGCATGATAACTGGTCCACCAGAGGTGTGTCCACTCCGGTCCTCTCGTAC 13837 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || | ||| ||| |||||| || | |||||||| | |||||||||| ||||||||| | Sbjct 13836 TAGGAGCAGGTCCCCTCAAACTTGCAGCGCCCACGGCAGATAGGGACCAAACTGTCTCAC 13777 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||| | |||||||||| ||| ||||||||| ||||||||||| |||||||||||| Sbjct 13776 GACGTTTTAAACCCAGCTCACGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACC 13717 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||||||||| |||||||||||| Sbjct 13716 GACTACAGCCCCAGGATGAGATGAGCCGACATCG 13683 >seq8424 Length=263062 Score = 277 bits (306), Expect = 3e-72 Identities = 222/268 (83%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGC 67 || ||| ||||||||||||||||| ||||||| ||| | ||||| ||| ||||||| Sbjct 259197 GGTTTCCCGCTTAGATGCCTTCAGCGGTTATCCCGTCCGGATATAGCTACCCTGCTATGC 259256 Query 68 ACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGA 127 |||| ||||| ||| |||||||| | |||||||||||||||||||||||| ||| Sbjct 259257 GGCTGGCGCCACAACAGGTCCACCAGAGATCCGTCCATCCCGGTCCTCTCGTACTAGGGA 259316 Query 128 CAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTT 187 ||| |||| |||| ||||||| |||||| | |||||||||||||||||||| ||||||| Sbjct 259317 CAGATCCTTTCAATATTCCTACACCCACGGCAGATAGGGACCGAACTGTCTCACGACGTT 259376 Query 188 CTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTC 247 ||||||||| ||| ||| || |||||| ||||| ||||| ||||||||||||| || | Sbjct 259377 CTGAACCCAACTCACGTACCGCTTTAAATGGCGACCAGCCATACCCTTGGGACCTGCTCC 259436 Query 248 AGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||||| || ||| |||||||| Sbjct 259437 AGCCCCAGGATGCGATGAGTCGACATCG 259464 >seq9910 Length=308115 Score = 269 bits (298), Expect = 4e-70 Identities = 224/274 (82%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| | | ||| |||||||||| |||||| ||||| |||||| |||||||| ||||| Sbjct 256342 GAGGCGAGTTTCACGCTTAGATGCTTTCAGCGTTTATCTCTTCCACACTTAGCTACCCAG 256401 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | || | |||||| | ||||||| |||||||||| |||||| ||||||||||||||| Sbjct 256402 CGATACCATTGGCATGATAACTGGTCCACCAGAGGTGTGTCCACTCCGGTCCTCTCGTAC 256461 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || | ||| ||| |||||| || | |||||||| | |||||||||| ||||||||| | Sbjct 256462 TAGGAGCAGGTCCCCTCAAACTTGCAGCGCCCACGGCAGATAGGGACCAAACTGTCTCAC 256521 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||| | |||||||||| ||| || |||||| ||||||||||| |||||||||||| Sbjct 256522 GACGTTTTAAACCCAGCTCACGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACC 256581 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || ||||||||||||| || | |||||||||| Sbjct 256582 GGCTACAGCCCCAGGATGTGATGGGCCGACATCG 256615 >seq6993 Length=5165 Score = 253 bits (280), Expect = 3e-65 Identities = 222/274 (81%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 3 AGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC 62 ||| | | ||| |||||||||| |||||| ||||| ||||| ||||||||| | | || Sbjct 3436 AGGCGAGTTTCCCGCTTAGATGCTTTCAGCGGTTATCTCTTCCGAACTTAGCTACTCGGC 3377 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 |||| |||| ||||| | | |||||||||| |||||| |||||||||||||||| Sbjct 3376 AATGCCACTGGCGTGACAACCGATACACCAGAGGTGTGTCCACTCCGGTCCTCTCGTACT 3317 Query 123 AAGGACAG-CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 | | ||| || | ||||||| | | |||||||| |||||||||| ||||||||| | Sbjct 3316 AGGAGCAGGCTTC-CTCAAATCTGCAGCGCCCACGGAAGATAGGGACCAAACTGTCTCAC 3258 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||| | |||||||||| ||| ||||||||| ||||||||||| |||||||||||| Sbjct 3257 GACGTTTTAAACCCAGCTCACGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACC 3198 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||||||||| |||||||||||| Sbjct 3197 GACTACAGCCCCAGGATGAGATGAGCCGACATCG 3164 >seq6860 Length=6169 Score = 250 bits (276), Expect = 4e-64 Identities = 209/260 (80%), Gaps = 21/260 (8%) Strand=Plus/Minus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 ||||||||||||||||| ||||||| ||| || ||||| | |||||| Sbjct 6163 GCTTAGATGCCTTCAGCGGTTATCCCGTCCGTACATAGCTATGC-----TGCACT----- 6114 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 ||||||||||| || ||||||||||||||||||||| ||||| |||| Sbjct 6113 -----------GCACCAGAGGTACGTTCATCCCGGTCCTCTCGTACTAGGGACAAATCCT 6065 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 |||||| |||| || |||||| | |||||||||||||||||||| ||||||||||||||| Sbjct 6064 CTCAAAATTCCAACACCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTGAACCC 6005 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 ||||| ||| || ||||||| ||||||||||| |||||||||||||| || ||||||||| Sbjct 6004 AGCTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGACCTGCTCCAGCCCCAG 5945 Query 256 GATGAGACGAGCCGACATCG 275 |||| || |||||||||||| Sbjct 5944 GATGTGATGAGCCGACATCG 5925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780686093724