Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01002011.1 Length=284 Score E Sequences producing significant alignments: (Bits) Value seq12208 165 1e-38 seq14260 163 5e-38 seq6187 114 2e-23 seq9891 107 3e-21 seq9511 96.9 6e-18 >seq12208 Length=67568 Score = 165 bits (182), Expect = 1e-38 Identities = 201/273 (74%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 10 CGGCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTCT 69 ||||||||||| || |||| ||||| || | |||| | || | || ||| | || || Sbjct 7149 CGGCCGCTGGACTTTGCGGCCTTCCCCTCG-GTGCTGCTGCTGACCACGCTGATGCGCCT 7091 Query 70 GGCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGC 129 | | ||||||| |||||||| || |||||| |||| | ||||| ||||| | || Sbjct 7090 GTCGCTGAACGTGGCCTCCACCCGCGTGGTGCTGCTGGAAGGCCACACCGGCCCCGGAGC 7031 Query 130 TGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGG 189 |||||| ||||||| |||||||||| | | |||||||||| |||| || |||||| Sbjct 7030 GGCCGGTGCGGTGATCGAGGCCTTCGGCCACTTCCTGATCGGCGGCAACTTCGCGGTCGG 6971 Query 190 TATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGG 249 | | |||||||| |||||| || | |||||||| |||||| | |||||||| |||| Sbjct 6970 CCTGATCGTGTTCGCCATCCTGGTGGTGATCAACTTCGTGGTGATCACCAAGGGTGCCGA 6911 Query 250 GCGGATTTCCGAGGTGAGCGCGCGGTTTACCCT 282 ||| || |||| || || || || ||||| Sbjct 6910 GCGTATCGCCGAAGTCTCGGCCCGCTTCACCCT 6878 >seq14260 Length=23114 Score = 163 bits (180), Expect = 5e-38 Identities = 188/252 (75%), Gaps = 1/252 (0%) Strand=Plus/Minus Query 31 TTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTCTGGCATTGAACGTCGCCTCCAC 90 ||||||||| | |||| | | ||||||||||| || ||||| | ||||||||||| || Sbjct 18841 TTCCCGACGG-TGCTGCTGTTCGCGACCCTGCTGCGCCTGGCGCTCAACGTCGCCTCGAC 18783 Query 91 GCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGCTGCCGGTAAGGTGATCCAGGC 150 || || ||| || | |||||| || || | ||| || || |||||||| |||| Sbjct 18782 CCGCGTCGTGCTGGTGTCCGGCCATGAGGGTTCGGACGCCGCGGGCCAGGTGATCGAGGC 18723 Query 151 CTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTATCGTGGTGTTCGCGATCCT 210 ||||| | | |||||||||| |||| || ||||| ||| | || ||||||||||| Sbjct 18722 ATTCGGCCATTTCCTGATCGGCGGCGACTATGTCGTCGGCATCTTCGTCTTCGCGATCCT 18663 Query 211 GATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGCGGATTTCCGAGGTGAGCGC 270 ||||||||||||| | ||||| | ||||||||||| || || | || || ||| || Sbjct 18662 GATGATCATCAACCTGGTGGTCATCACCAAGGGCGCGGGCCGCGTGTCGGAAGTGTCGGC 18603 Query 271 GCGGTTTACCCT 282 ||| || ||||| Sbjct 18602 GCGTTTCACCCT 18591 >seq6187 Length=79498 Score = 114 bits (126), Expect = 2e-23 Identities = 191/272 (70%), Gaps = 3/272 (1%) Strand=Plus/Minus Query 12 GCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTAC-GTCTG 70 ||||||||| ||| ||| ||||||||| | |||| ||| || ||||| |||| | ||| Sbjct 44954 GCCGCTGGAGTTCTCGGCCTTCCCGACGG-TGCTGCTGGTCGCCACCCT-CTACCGGCTG 44897 Query 71 GCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGCT 130 | | ||| |||||||||| || || | | |||||||||||| ||| | || Sbjct 44896 GGCCTCAACATCGCCTCCACCCGCCTGATCCTCGGCCACGGCCAGGAGGGCGTCGGCGGC 44837 Query 131 GCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGT 190 || || || | ||| |||||||||| | || |||| || |||| | | |||| Sbjct 44836 GCGGGCAACATCATCGAGGCCTTCGGCCACCTGATGATGCAGGGCAACTTCATCATCGGG 44777 Query 191 ATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGG 250 | | ||||||| |||||| ||||| | ||||| ||||| | ||||||||| | Sbjct 44776 GTGATCCTGTTCGCCATCCTGGTGATCGTGAACTTCGTGGTCATCACCAAGGGCTCGACC 44717 Query 251 CGGATTTCCGAGGTGAGCGCGCGGTTTACCCT 282 || || |||||||| ||||| || ||||| Sbjct 44716 CGCATCGCCGAGGTGGCGGCGCGCTTCACCCT 44685 >seq9891 Length=76964 Score = 107 bits (118), Expect = 3e-21 Identities = 186/268 (69%), Gaps = 3/268 (1%) Strand=Plus/Minus Query 14 CGCTGGATTTCGCGGTGTTCCCGAC-GTATTCTGCAGGTGGCGACCCTGCTACGTCTGGC 72 ||||||||||| | ||||| || ||||| || || | || ||||||| || | Sbjct 58462 CGCTGGATTTCATTGCCTTCCCTACCGTATTACTCA--TGACCACTATGCTACGCCTATC 58405 Query 73 ATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGCTGC 132 | | ||||| || || || || ||||| || | || || ||||| | ||||| Sbjct 58404 ACTTAACGTAGCGTCTACCCGCGTGGTATTGACTGAAGGTCATACCGGCCCGGATGCTGC 58345 Query 133 CGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTAT 192 |||||| ||||| | || || || | | ||||||||||||| |||| || ||||| Sbjct 58344 CGGTAAAGTGATTGAAGCGTTTGGCCACTTCTTGATCGGCGGTAATTACGCTGTGGGTAT 58285 Query 193 CGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGCG 252 ||||||||| ||||| | ||||| |||||| || | ||||| || || || || Sbjct 58284 CGTGGTGTTTATTATCCTCACCATCATTAACTTTACCGTAATTACCAAAGGTGCTGGCCG 58225 Query 253 GATTTCCGAGGTGAGCGCGCGGTTTACC 280 ||| | ||||| |||| || |||||| Sbjct 58224 TATTGCTGAGGTTGGCGCACGTTTTACC 58197 >seq9511 Length=155073 Score = 96.9 bits (106), Expect = 6e-18 Identities = 187/272 (69%), Gaps = 3/272 (1%) Strand=Plus/Minus Query 12 GCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTA-CGTCTG 70 ||||||||| ||| | ||||||||| | || | ||| ||||| || ||| |||||| Sbjct 56234 GCCGCTGGAATTCACCTCGTTCCCGACCG-TGCTCCTGGTCGCGACGCT-CTATCGTCTG 56177 Query 71 GCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGCT 130 | | || ||||||| || || || | || |||||||||||| ||| | || Sbjct 56176 GGCCTCAATATCGCCTCGACCCGCCTGATCCTGGGCCACGGCCAGGAGGGCACGGGCGGC 56117 Query 131 GCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGT 190 ||||| || ||| |||||||||| | || |||| || || | ||| |||| Sbjct 56116 GCCGGCGCCGTCATCGAGGCCTTCGGCCATCTGATGATGCAAGGCAATTTCGTCATCGGC 56057 Query 191 ATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGG 250 | | |||||| |||||| || | | ||||| |||| ||||||||||| | || Sbjct 56056 GTGATCGTGTTCATCATCCTGGTGGTGGTGAACTTCATGGTCGTGACCAAGGGTTCGGGC 55997 Query 251 CGGATTTCCGAGGTGAGCGCGCGGTTTACCCT 282 ||||| |||| ||| ||| || || ||||| Sbjct 55996 CGGATCGCCGAAGTGGCCGCCCGCTTCACCCT 55965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 809481892263