Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01002011.1
Length=284
Score E
Sequences producing significant alignments: (Bits) Value
seq12208 165 1e-38
seq14260 163 5e-38
seq6187 114 2e-23
seq9891 107 3e-21
seq9511 96.9 6e-18
>seq12208
Length=67568
Score = 165 bits (182), Expect = 1e-38
Identities = 201/273 (74%), Gaps = 1/273 (0%)
Strand=Plus/Minus
Query 10 CGGCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTCT 69
||||||||||| || |||| ||||| || | |||| | || | || ||| | || ||
Sbjct 7149 CGGCCGCTGGACTTTGCGGCCTTCCCCTCG-GTGCTGCTGCTGACCACGCTGATGCGCCT 7091
Query 70 GGCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGC 129
| | ||||||| |||||||| || |||||| |||| | ||||| ||||| | ||
Sbjct 7090 GTCGCTGAACGTGGCCTCCACCCGCGTGGTGCTGCTGGAAGGCCACACCGGCCCCGGAGC 7031
Query 130 TGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGG 189
|||||| ||||||| |||||||||| | | |||||||||| |||| || ||||||
Sbjct 7030 GGCCGGTGCGGTGATCGAGGCCTTCGGCCACTTCCTGATCGGCGGCAACTTCGCGGTCGG 6971
Query 190 TATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGG 249
| | |||||||| |||||| || | |||||||| |||||| | |||||||| ||||
Sbjct 6970 CCTGATCGTGTTCGCCATCCTGGTGGTGATCAACTTCGTGGTGATCACCAAGGGTGCCGA 6911
Query 250 GCGGATTTCCGAGGTGAGCGCGCGGTTTACCCT 282
||| || |||| || || || || |||||
Sbjct 6910 GCGTATCGCCGAAGTCTCGGCCCGCTTCACCCT 6878
>seq14260
Length=23114
Score = 163 bits (180), Expect = 5e-38
Identities = 188/252 (75%), Gaps = 1/252 (0%)
Strand=Plus/Minus
Query 31 TTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTCTGGCATTGAACGTCGCCTCCAC 90
||||||||| | |||| | | ||||||||||| || ||||| | ||||||||||| ||
Sbjct 18841 TTCCCGACGG-TGCTGCTGTTCGCGACCCTGCTGCGCCTGGCGCTCAACGTCGCCTCGAC 18783
Query 91 GCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGCTGCCGGTAAGGTGATCCAGGC 150
|| || ||| || | |||||| || || | ||| || || |||||||| ||||
Sbjct 18782 CCGCGTCGTGCTGGTGTCCGGCCATGAGGGTTCGGACGCCGCGGGCCAGGTGATCGAGGC 18723
Query 151 CTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTATCGTGGTGTTCGCGATCCT 210
||||| | | |||||||||| |||| || ||||| ||| | || |||||||||||
Sbjct 18722 ATTCGGCCATTTCCTGATCGGCGGCGACTATGTCGTCGGCATCTTCGTCTTCGCGATCCT 18663
Query 211 GATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGCGGATTTCCGAGGTGAGCGC 270
||||||||||||| | ||||| | ||||||||||| || || | || || ||| ||
Sbjct 18662 GATGATCATCAACCTGGTGGTCATCACCAAGGGCGCGGGCCGCGTGTCGGAAGTGTCGGC 18603
Query 271 GCGGTTTACCCT 282
||| || |||||
Sbjct 18602 GCGTTTCACCCT 18591
>seq6187
Length=79498
Score = 114 bits (126), Expect = 2e-23
Identities = 191/272 (70%), Gaps = 3/272 (1%)
Strand=Plus/Minus
Query 12 GCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTAC-GTCTG 70
||||||||| ||| ||| ||||||||| | |||| ||| || ||||| |||| | |||
Sbjct 44954 GCCGCTGGAGTTCTCGGCCTTCCCGACGG-TGCTGCTGGTCGCCACCCT-CTACCGGCTG 44897
Query 71 GCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGCT 130
| | ||| |||||||||| || || | | |||||||||||| ||| | ||
Sbjct 44896 GGCCTCAACATCGCCTCCACCCGCCTGATCCTCGGCCACGGCCAGGAGGGCGTCGGCGGC 44837
Query 131 GCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGT 190
|| || || | ||| |||||||||| | || |||| || |||| | | ||||
Sbjct 44836 GCGGGCAACATCATCGAGGCCTTCGGCCACCTGATGATGCAGGGCAACTTCATCATCGGG 44777
Query 191 ATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGG 250
| | ||||||| |||||| ||||| | ||||| ||||| | ||||||||| |
Sbjct 44776 GTGATCCTGTTCGCCATCCTGGTGATCGTGAACTTCGTGGTCATCACCAAGGGCTCGACC 44717
Query 251 CGGATTTCCGAGGTGAGCGCGCGGTTTACCCT 282
|| || |||||||| ||||| || |||||
Sbjct 44716 CGCATCGCCGAGGTGGCGGCGCGCTTCACCCT 44685
>seq9891
Length=76964
Score = 107 bits (118), Expect = 3e-21
Identities = 186/268 (69%), Gaps = 3/268 (1%)
Strand=Plus/Minus
Query 14 CGCTGGATTTCGCGGTGTTCCCGAC-GTATTCTGCAGGTGGCGACCCTGCTACGTCTGGC 72
||||||||||| | ||||| || ||||| || || | || ||||||| || |
Sbjct 58462 CGCTGGATTTCATTGCCTTCCCTACCGTATTACTCA--TGACCACTATGCTACGCCTATC 58405
Query 73 ATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGCTGC 132
| | ||||| || || || || ||||| || | || || ||||| | |||||
Sbjct 58404 ACTTAACGTAGCGTCTACCCGCGTGGTATTGACTGAAGGTCATACCGGCCCGGATGCTGC 58345
Query 133 CGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTAT 192
|||||| ||||| | || || || | | ||||||||||||| |||| || |||||
Sbjct 58344 CGGTAAAGTGATTGAAGCGTTTGGCCACTTCTTGATCGGCGGTAATTACGCTGTGGGTAT 58285
Query 193 CGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGCG 252
||||||||| ||||| | ||||| |||||| || | ||||| || || || ||
Sbjct 58284 CGTGGTGTTTATTATCCTCACCATCATTAACTTTACCGTAATTACCAAAGGTGCTGGCCG 58225
Query 253 GATTTCCGAGGTGAGCGCGCGGTTTACC 280
||| | ||||| |||| || ||||||
Sbjct 58224 TATTGCTGAGGTTGGCGCACGTTTTACC 58197
>seq9511
Length=155073
Score = 96.9 bits (106), Expect = 6e-18
Identities = 187/272 (69%), Gaps = 3/272 (1%)
Strand=Plus/Minus
Query 12 GCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTA-CGTCTG 70
||||||||| ||| | ||||||||| | || | ||| ||||| || ||| ||||||
Sbjct 56234 GCCGCTGGAATTCACCTCGTTCCCGACCG-TGCTCCTGGTCGCGACGCT-CTATCGTCTG 56177
Query 71 GCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGCT 130
| | || ||||||| || || || | || |||||||||||| ||| | ||
Sbjct 56176 GGCCTCAATATCGCCTCGACCCGCCTGATCCTGGGCCACGGCCAGGAGGGCACGGGCGGC 56117
Query 131 GCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGT 190
||||| || ||| |||||||||| | || |||| || || | ||| ||||
Sbjct 56116 GCCGGCGCCGTCATCGAGGCCTTCGGCCATCTGATGATGCAAGGCAATTTCGTCATCGGC 56057
Query 191 ATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGG 250
| | |||||| |||||| || | | ||||| |||| ||||||||||| | ||
Sbjct 56056 GTGATCGTGTTCATCATCCTGGTGGTGGTGAACTTCATGGTCGTGACCAAGGGTTCGGGC 55997
Query 251 CGGATTTCCGAGGTGAGCGCGCGGTTTACCCT 282
||||| |||| ||| ||| || || |||||
Sbjct 55996 CGGATCGCCGAAGTGGCCGCCCGCTTCACCCT 55965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 809481892263
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |