Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01002051.1 Length=353 Score E Sequences producing significant alignments: (Bits) Value seq9800 122 2e-25 >seq9800 Length=25387 Score = 122 bits (134), Expect = 2e-25 Identities = 232/343 (68%), Gaps = 28/343 (8%) Strand=Plus/Plus Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60 |||||| |||||| ||||| ||||| |||||| |||| || | ||||| ||| | | Sbjct 18777 CGACCGGCTGCGCTTCGTGGCCGAGCGTGCCGAGGTGGGCGAGGAGCGCGAGGCGCTTTT 18836 Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGGCGTTCTGCGAGGCCGTGGGCAA 120 ||||||||||| |||||| | | ||||||||||||| || ||||| | ||||||||| Sbjct 18837 TGCCGTGACCATCCCCGAGGAACGCGGCAGCTTCAAGCGCTTTTGCGAAGTCGTGGGCAA 18896 Query 121 ---------------GCGCCAGATCACCGAATTCAACTACCGTTTCCACTCCGGCAGCGA 165 |||| | | ||||| ||||||||||| || | || | | | Sbjct 18897 GCTGCCTGGCGGCCCGCGCAACGTGACCGAGTTCAACTACCGCATCACCCACGAGAACAA 18956 Query 166 GGCGCACATCTTTGTCGGCGTGCAGACCCACCCCGACACCGACCCCCGCAG--CGCGCTG 223 ||| || |||| || ||| || ||| || || || | || || || | | Sbjct 18957 GGCCCATGTCTTCGTGGGCCTG-------ACCACGGCAGCGCGCGGCG-AGTCCGAGAAG 19008 Query 224 ATCGCCAG---CCTGACCGAGCAGGGTTTCCCGGTGCTGGACCTGACCGAGAATGAGCTG 280 |||||||| | | ||||||| ||| || ||||||||||||| | || || Sbjct 19009 ATCGCCAGGAACTTCGAGAAGCAGGGCTTCGAGGCGCTGGACCTGACCTTCGACGACATG 19068 Query 281 GCCAAGCTGCACATCCGCCATATGGTCGGCGGCCATGCGGCGC 323 |||||| ||| | ||||| ||||||||||| ||| || ||| Sbjct 19069 GCCAAGGAGCATCTGCGCCACATGGTCGGCGGTCATTCGCCGC 19111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027045313952