Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq7029 149 1e-33 seq13010 141 2e-31 seq8237 109 9e-22 seq9576 107 3e-21 seq10729 95.1 2e-17 seq9758 89.7 9e-16 seq8824 84.2 4e-14 >seq7029 Length=148368 Score = 149 bits (164), Expect = 1e-33 Identities = 153/199 (77%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 96 GCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACC 155 || |||||||| || | | || | |||||| || | |||||||||| || || || Sbjct 37834 GCCAGGAAGGCCTCCT-GAGGCACTTCCACCGAACCGATCTGCTTCATGCGCTTCTTGCC 37776 Query 156 GGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGC 215 |||||||||||||| |||||||||||||| ||| | | ||| ||||| ||||| ||||| Sbjct 37775 AGCCTTTTGCTTCTCCAGCAGCTTGCGCTTGCGGGTGATGTCGCCGCCATAGCACTTGGC 37716 Query 216 CAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGC 275 ||| |||||||| | | |||||||||| ||| |||||||| | |||| | ||| Sbjct 37715 CAGCACGTTCTTGCGCATGGCCTTGACGGTTTCCCGAGCAATGATGTTGGCGCCGACGGC 37656 Query 276 GGCCTGGATCGCGACGTCG 294 ||||||||| || |||||| Sbjct 37655 GGCCTGGATGGCCACGTCG 37637 >seq13010 Length=9775 Score = 141 bits (156), Expect = 2e-31 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 90 AGCACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTT 149 ||||| || ||||| ||||| | | || || |||||| ||| || |||||||||| || Sbjct 3177 AGCACGGCCAGGAACGCTTCCT-GCGGGATCTCCACGCGGCCGACCTGCTTCATGCGCTT 3119 Query 150 TTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCA 209 || || |||| ||||| || || ||||| ||| || ||||| || || ||||| Sbjct 3118 CTTGCCTTCCTTCTGCTTTTCCAGAAGCTTCTTCTTGCGCGAAACGTCGCCACCATAGCA 3059 Query 210 TTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCC 269 |||||||| |||||||| | | |||||||| | ||| || || ||||||||| ||| Sbjct 3058 CTTGGCCAGCACGTTCTTGCGCATGGCCTTGACCGTGGTACGGGCGATGATCTGCGAGCC 2999 Query 270 AATGGCGGCCTGGATCGCGACGTCG 294 || |||||||||||| || |||||| Sbjct 2998 AACGGCGGCCTGGATGGCCACGTCG 2974 >seq8237 Length=506431 Score = 109 bits (120), Expect = 9e-22 Identities = 146/202 (72%), Gaps = 1/202 (0%) Strand=Plus/Plus Query 92 CACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTT 151 ||| |||||||| ||||||| |||| ||||| || | |||||| ||||||||||||| | Sbjct 195967 CACAGCAAGGAACGCTTCTT-GTGGGATTTCAACACTACCCACTTGCTTCATGCGTTTCT 196025 Query 152 TACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATT 211 |||| | ||||| ||| | ||| || |||||| |||||||| || || |||| Sbjct 196026 TACCTTCTTTTTGTTTCGATAACAGTTTCTTCTTACGAGAAACGTCACCACCATAACATT 196085 Query 212 TGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAA 271 | |||| |||||| || | | || || || | | || |||||||| || | || | Sbjct 196086 TAGCCAATACGTTTTTACGCATCGCTTTAACTGTTGAACGTGCAATGATTTGTGCACCTA 196145 Query 272 TGGCGGCCTGGATCGCGACGTC 293 | || || || ||||| || || Sbjct 196146 TTGCAGCTTGAATCGCCACATC 196167 >seq9576 Length=119252 Score = 107 bits (118), Expect = 3e-21 Identities = 152/210 (72%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 81 TCCAACCTGAGCACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCA-CTCGCT 139 |||| | | ||| |||| | ||| ||||| | | || || || || ||||| | || || Sbjct 65421 TCCATCTTCAGCGCCGCGATGAACGCTTCCT-GCGGGATCTCGACCTTGCCGAACTGGCG 65363 Query 140 TCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCAC 199 |||||| || || || |||| ||||| || || ||||||||||| ||||| |||| | Sbjct 65362 -CATGCGCTTCTTGCCTTCCTTCTGCTTGTCCAGAAGCTTGCGCTTGCGGCTGGCGTCGC 65304 Query 200 CGCCGTAGCATTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGA 259 |||||||||| ||||| |||| ||| | || ||| |||| || || |||| Sbjct 65303 CGCCGTAGCACTTGGCGGTCACGTCCTTGCGCAGGGCCCGCACGGTCTCGCGGGCGATGA 65244 Query 260 TCTGCCCGCCAATGGCGGCCTGGATCGCGA 289 | | ||||| |||||||| ||||||| || Sbjct 65243 TGCGGCCGCCGATGGCGGCTTGGATCGGGA 65214 >seq10729 Length=105846 Score = 95.1 bits (104), Expect = 2e-17 Identities = 135/189 (71%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 101 GAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCGGCCT 160 ||||||||| | | || || || || ||||| | || |||||| || || || ||| Sbjct 4727 GAAGGCTTCCT-GCGGGATCTCGACCTTGCCGAACTGCCGCATGCGCTTCTTGCCTTCCT 4669 Query 161 TTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTA 220 | ||||| || || ||||||||||| ||||| |||| ||||||||||| |||||| | Sbjct 4668 TCTGCTTGTCCAGAAGCTTGCGCTTGCGGCTGGCGTCGCCGCCGTAGCACTTGGCCGTCA 4609 Query 221 CGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGCGGCCT 280 ||| ||| | || || || | || || |||| || ||||| | ||| |||| Sbjct 4608 CGTCCTTGCGCAGGGCGCGCACCGTCTCGCGGGCGATGACCTTGCCGCCCAGGGCCGCCT 4549 Query 281 GGATCGCGA 289 |||||| || Sbjct 4548 GGATCGGGA 4540 >seq9758 Length=152424 Score = 89.7 bits (98), Expect = 9e-16 Identities = 77/94 (82%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 95 CGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTAC 154 ||| ||||| ||||||| ||||||| || || || |||||| |||||||||||||||||| Sbjct 10524 CGCTAGGAAAGCTTCTT-GTGGAATCTCTACATTCCCCACTTGCTTCATGCGTTTTTTAC 10582 Query 155 CGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACG 188 | | ||||| || || |||| || |||||||| Sbjct 10583 CTTCTTTTTGTTTATCTAGCAATTTACGCTTACG 10616 >seq8824 Length=455128 Score = 84.2 bits (92), Expect = 4e-14 Identities = 135/190 (71%), Gaps = 3/190 (2%) Strand=Plus/Minus Query 101 GAAGGCTTCTTAGTGGAATTTCCACGTTGCC-CACTCGCTTCATGCGTTTTTTACCGGCC 159 ||||||||| | | ||||||||||| ||||| ||| || |||||| || || || || Sbjct 248177 GAAGGCTTCCT-GCGGAATTTCCACCTTGCCGAACTGGC-GCATGCGCTTCTTGCCTTCC 248120 Query 160 TTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGT 219 || ||||| || || || ||||| ||||| | |||| || ||||| || || ||| Sbjct 248119 TTCTGCTTGTCCAGAAGTTTGCGTTTACGCGTCGCGTCGCCACCGTAACACTTCGCCGTC 248060 Query 220 ACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGCGGCC 279 || | ||| | || || |||| || || |||| || ||||| || |||||| Sbjct 248059 ACATCCTTGCGCAGCGCGCGCACGGTTTCGCGGGCGATGACCTTGCCGCCGATCGCGGCC 248000 Query 280 TGGATCGCGA 289 ||||||| || Sbjct 247999 TGGATCGGGA 247990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 838273745344