Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01002055.1
Length=294
Score E
Sequences producing significant alignments: (Bits) Value
seq7029 149 1e-33
seq13010 141 2e-31
seq8237 109 9e-22
seq9576 107 3e-21
seq10729 95.1 2e-17
seq9758 89.7 9e-16
seq8824 84.2 4e-14
>seq7029
Length=148368
Score = 149 bits (164), Expect = 1e-33
Identities = 153/199 (77%), Gaps = 1/199 (1%)
Strand=Plus/Minus
Query 96 GCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACC 155
|| |||||||| || | | || | |||||| || | |||||||||| || || ||
Sbjct 37834 GCCAGGAAGGCCTCCT-GAGGCACTTCCACCGAACCGATCTGCTTCATGCGCTTCTTGCC 37776
Query 156 GGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGC 215
|||||||||||||| |||||||||||||| ||| | | ||| ||||| ||||| |||||
Sbjct 37775 AGCCTTTTGCTTCTCCAGCAGCTTGCGCTTGCGGGTGATGTCGCCGCCATAGCACTTGGC 37716
Query 216 CAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGC 275
||| |||||||| | | |||||||||| ||| |||||||| | |||| | |||
Sbjct 37715 CAGCACGTTCTTGCGCATGGCCTTGACGGTTTCCCGAGCAATGATGTTGGCGCCGACGGC 37656
Query 276 GGCCTGGATCGCGACGTCG 294
||||||||| || ||||||
Sbjct 37655 GGCCTGGATGGCCACGTCG 37637
>seq13010
Length=9775
Score = 141 bits (156), Expect = 2e-31
Identities = 155/205 (76%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 90 AGCACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTT 149
||||| || ||||| ||||| | | || || |||||| ||| || |||||||||| ||
Sbjct 3177 AGCACGGCCAGGAACGCTTCCT-GCGGGATCTCCACGCGGCCGACCTGCTTCATGCGCTT 3119
Query 150 TTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCA 209
|| || |||| ||||| || || ||||| ||| || ||||| || || |||||
Sbjct 3118 CTTGCCTTCCTTCTGCTTTTCCAGAAGCTTCTTCTTGCGCGAAACGTCGCCACCATAGCA 3059
Query 210 TTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCC 269
|||||||| |||||||| | | |||||||| | ||| || || ||||||||| |||
Sbjct 3058 CTTGGCCAGCACGTTCTTGCGCATGGCCTTGACCGTGGTACGGGCGATGATCTGCGAGCC 2999
Query 270 AATGGCGGCCTGGATCGCGACGTCG 294
|| |||||||||||| || ||||||
Sbjct 2998 AACGGCGGCCTGGATGGCCACGTCG 2974
>seq8237
Length=506431
Score = 109 bits (120), Expect = 9e-22
Identities = 146/202 (72%), Gaps = 1/202 (0%)
Strand=Plus/Plus
Query 92 CACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTT 151
||| |||||||| ||||||| |||| ||||| || | |||||| ||||||||||||| |
Sbjct 195967 CACAGCAAGGAACGCTTCTT-GTGGGATTTCAACACTACCCACTTGCTTCATGCGTTTCT 196025
Query 152 TACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATT 211
|||| | ||||| ||| | ||| || |||||| |||||||| || || ||||
Sbjct 196026 TACCTTCTTTTTGTTTCGATAACAGTTTCTTCTTACGAGAAACGTCACCACCATAACATT 196085
Query 212 TGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAA 271
| |||| |||||| || | | || || || | | || |||||||| || | || |
Sbjct 196086 TAGCCAATACGTTTTTACGCATCGCTTTAACTGTTGAACGTGCAATGATTTGTGCACCTA 196145
Query 272 TGGCGGCCTGGATCGCGACGTC 293
| || || || ||||| || ||
Sbjct 196146 TTGCAGCTTGAATCGCCACATC 196167
>seq9576
Length=119252
Score = 107 bits (118), Expect = 3e-21
Identities = 152/210 (72%), Gaps = 3/210 (1%)
Strand=Plus/Minus
Query 81 TCCAACCTGAGCACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCA-CTCGCT 139
|||| | | ||| |||| | ||| ||||| | | || || || || ||||| | || ||
Sbjct 65421 TCCATCTTCAGCGCCGCGATGAACGCTTCCT-GCGGGATCTCGACCTTGCCGAACTGGCG 65363
Query 140 TCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCAC 199
|||||| || || || |||| ||||| || || ||||||||||| ||||| |||| |
Sbjct 65362 -CATGCGCTTCTTGCCTTCCTTCTGCTTGTCCAGAAGCTTGCGCTTGCGGCTGGCGTCGC 65304
Query 200 CGCCGTAGCATTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGA 259
|||||||||| ||||| |||| ||| | || ||| |||| || || ||||
Sbjct 65303 CGCCGTAGCACTTGGCGGTCACGTCCTTGCGCAGGGCCCGCACGGTCTCGCGGGCGATGA 65244
Query 260 TCTGCCCGCCAATGGCGGCCTGGATCGCGA 289
| | ||||| |||||||| ||||||| ||
Sbjct 65243 TGCGGCCGCCGATGGCGGCTTGGATCGGGA 65214
>seq10729
Length=105846
Score = 95.1 bits (104), Expect = 2e-17
Identities = 135/189 (71%), Gaps = 1/189 (1%)
Strand=Plus/Minus
Query 101 GAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCGGCCT 160
||||||||| | | || || || || ||||| | || |||||| || || || |||
Sbjct 4727 GAAGGCTTCCT-GCGGGATCTCGACCTTGCCGAACTGCCGCATGCGCTTCTTGCCTTCCT 4669
Query 161 TTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTA 220
| ||||| || || ||||||||||| ||||| |||| ||||||||||| |||||| |
Sbjct 4668 TCTGCTTGTCCAGAAGCTTGCGCTTGCGGCTGGCGTCGCCGCCGTAGCACTTGGCCGTCA 4609
Query 221 CGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGCGGCCT 280
||| ||| | || || || | || || |||| || ||||| | ||| ||||
Sbjct 4608 CGTCCTTGCGCAGGGCGCGCACCGTCTCGCGGGCGATGACCTTGCCGCCCAGGGCCGCCT 4549
Query 281 GGATCGCGA 289
|||||| ||
Sbjct 4548 GGATCGGGA 4540
>seq9758
Length=152424
Score = 89.7 bits (98), Expect = 9e-16
Identities = 77/94 (82%), Gaps = 1/94 (1%)
Strand=Plus/Plus
Query 95 CGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTAC 154
||| ||||| ||||||| ||||||| || || || |||||| ||||||||||||||||||
Sbjct 10524 CGCTAGGAAAGCTTCTT-GTGGAATCTCTACATTCCCCACTTGCTTCATGCGTTTTTTAC 10582
Query 155 CGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACG 188
| | ||||| || || |||| || ||||||||
Sbjct 10583 CTTCTTTTTGTTTATCTAGCAATTTACGCTTACG 10616
>seq8824
Length=455128
Score = 84.2 bits (92), Expect = 4e-14
Identities = 135/190 (71%), Gaps = 3/190 (2%)
Strand=Plus/Minus
Query 101 GAAGGCTTCTTAGTGGAATTTCCACGTTGCC-CACTCGCTTCATGCGTTTTTTACCGGCC 159
||||||||| | | ||||||||||| ||||| ||| || |||||| || || || ||
Sbjct 248177 GAAGGCTTCCT-GCGGAATTTCCACCTTGCCGAACTGGC-GCATGCGCTTCTTGCCTTCC 248120
Query 160 TTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGT 219
|| ||||| || || || ||||| ||||| | |||| || ||||| || || |||
Sbjct 248119 TTCTGCTTGTCCAGAAGTTTGCGTTTACGCGTCGCGTCGCCACCGTAACACTTCGCCGTC 248060
Query 220 ACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGCGGCC 279
|| | ||| | || || |||| || || |||| || ||||| || ||||||
Sbjct 248059 ACATCCTTGCGCAGCGCGCGCACGGTTTCGCGGGCGATGACCTTGCCGCCGATCGCGGCC 248000
Query 280 TGGATCGCGA 289
||||||| ||
Sbjct 247999 TGGATCGGGA 247990
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 838273745344
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |