Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01002110.1 Length=382 Score E Sequences producing significant alignments: (Bits) Value seq10703 132 1e-28 seq7053 114 3e-23 seq6714 105 1e-20 seq9910 102 2e-19 seq12839 75.2 3e-11 >seq10703 Length=79623 Score = 132 bits (146), Expect = 1e-28 Identities = 197/282 (70%), Gaps = 22/282 (8%) Strand=Plus/Minus Query 123 GCCTGGGGCATCAAGGACAACGAATAACTGACTTCCAGCATGCGTGCCAGGTTCTCGGCG 182 |||||||||| || ||| ||| ||| | |||||||| || |||||| || Sbjct 59085 GCCTGGGGCAGCATGGAAGTGTCATAGGAGACGTTGAGCATGCGGGCAGTGTTCTCCGCA 59026 Query 183 CGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTTCTACGCAGCATAC----T 238 |||||| ||| || |||||||| ||||||| | || || | | ||||| | | Sbjct 59025 CGCTCCGTGTAGCGGGACATCCAGTACAGATGATCGGCAGTACGGCTGAGCATTCAATGT 58966 Query 239 CAGCCCTC--------CACC----------ACCCAGGTGTCCTTGGTTCCACCGCCTTGC 280 | ||||| |||| ||||||||||||||||| || ||||| || Sbjct 58965 CCTCCCTCGTTTGACTCACCGGCCCCGAGCACCCAGGTGTCCTTGGTGCCGCCGCCCTGT 58906 Query 281 GACGAGTTGACGACCAGCGAGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACC 340 || || ||||| ||||||||||||||||| ||||||||||| || | ||| |||| |||| Sbjct 58905 GATGAATTGACCACCAGCGAGCCTTCCTTGAGCGCCACGCGCGTGAGGCCGCCGGCCACC 58846 Query 341 AGGCGGGTTTCCTTGCCCGAGAGCACGAAGGGTCGCAAGTCG 382 | ||| | ||||| |||||||||||| |||| |||| Sbjct 58845 ATGCGTACCTGATTGCCGCTGAGCACGAAGGGACGCAGGTCG 58804 >seq7053 Length=464797 Score = 114 bits (126), Expect = 3e-23 Identities = 130/173 (75%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 165 CGTGCCAGGTTCTCGGCGCGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTT 224 || || | ||| || |||||||| | ||| || |||||||||| || | || ||| Sbjct 382411 CGGGCGATGTTTTCAGCGCGCTCGATGTACCGGAACATCCAATAGAGCCCGTTTGCCGTT 382352 Query 225 CTACGCAGCATA-CTCAGCCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGAC 283 || | |||||| || | |||||| ||||||||||||||||| || ||||| || Sbjct 382351 CTGCCCAGCATGGCTTAATCCTCCAGTACCCAGGTGTCCTTGGTGCCGCCGCCCTGGCTG 382292 Query 284 GAGTTGACGACCAGCGAGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGG 336 || ||||| ||||||||||| | |||||||| || ||||||| ||| ||||| Sbjct 382291 GAATTGACCACCAGCGAGCCCTTTTTCAGCGCAACACGGGTCAGGCCGCCGGG 382239 >seq6714 Length=1758414 Score = 105 bits (116), Expect = 1e-20 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 245 TCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAGCCT 304 |||| |||||| || ||||| || || ||||| || ||||| || || || ||||||||| Sbjct 181985 TCCAACACCCACGTATCCTTCGTCCCGCCGCCCTGAGACGAATTCACCACGAGCGAGCCT 182044 Query 305 TCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAG 342 ||||||||||| || ||||||| ||| ||||||||||| Sbjct 182045 TCCTTCAGCGCGACACGGGTCAGGCCGCCGGGCACCAG 182082 >seq9910 Length=308115 Score = 102 bits (112), Expect = 2e-19 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 244 CTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAGCC 303 ||||| |||||||||||| ||||| || |||||||| || ||||| || |||||||| || Sbjct 286537 CTCCAACACCCAGGTGTCTTTGGTGCCGCCGCCTTGAGATGAGTTCACCACCAGCGAACC 286596 Query 304 TTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCAC 339 ||| || | |||||||||| ||| ||||| ||||| Sbjct 286597 TTCTTTTAACGCCACGCGGCACAAACCACCTGGCAC 286632 >seq12839 Length=204338 Score = 75.2 bits (82), Expect = 3e-11 Identities = 70/89 (79%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 251 ACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAGCCTTCCTTC 310 ||||| || ||||| ||||||| ||||| || |||||||| ||||| || |||| | | Sbjct 76626 ACCCATGTATCCTTAATTCCACCACCTTGTGATGAGTTGACCACCAGTGAACCTTGTTGC 76567 Query 311 AGCGCCACGCGGGTCAAGCCACCGGGCAC 339 | ||| || || ||||||||||| || || Sbjct 76566 ATCGCAACACGAGTCAAGCCACCTGGAAC 76538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1119831339200