Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01002110.1
Length=382
Score E
Sequences producing significant alignments: (Bits) Value
seq10703 132 1e-28
seq7053 114 3e-23
seq6714 105 1e-20
seq9910 102 2e-19
seq12839 75.2 3e-11
>seq10703
Length=79623
Score = 132 bits (146), Expect = 1e-28
Identities = 197/282 (70%), Gaps = 22/282 (8%)
Strand=Plus/Minus
Query 123 GCCTGGGGCATCAAGGACAACGAATAACTGACTTCCAGCATGCGTGCCAGGTTCTCGGCG 182
|||||||||| || ||| ||| ||| | |||||||| || |||||| ||
Sbjct 59085 GCCTGGGGCAGCATGGAAGTGTCATAGGAGACGTTGAGCATGCGGGCAGTGTTCTCCGCA 59026
Query 183 CGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTTCTACGCAGCATAC----T 238
|||||| ||| || |||||||| ||||||| | || || | | ||||| | |
Sbjct 59025 CGCTCCGTGTAGCGGGACATCCAGTACAGATGATCGGCAGTACGGCTGAGCATTCAATGT 58966
Query 239 CAGCCCTC--------CACC----------ACCCAGGTGTCCTTGGTTCCACCGCCTTGC 280
| ||||| |||| ||||||||||||||||| || ||||| ||
Sbjct 58965 CCTCCCTCGTTTGACTCACCGGCCCCGAGCACCCAGGTGTCCTTGGTGCCGCCGCCCTGT 58906
Query 281 GACGAGTTGACGACCAGCGAGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACC 340
|| || ||||| ||||||||||||||||| ||||||||||| || | ||| |||| ||||
Sbjct 58905 GATGAATTGACCACCAGCGAGCCTTCCTTGAGCGCCACGCGCGTGAGGCCGCCGGCCACC 58846
Query 341 AGGCGGGTTTCCTTGCCCGAGAGCACGAAGGGTCGCAAGTCG 382
| ||| | ||||| |||||||||||| |||| ||||
Sbjct 58845 ATGCGTACCTGATTGCCGCTGAGCACGAAGGGACGCAGGTCG 58804
>seq7053
Length=464797
Score = 114 bits (126), Expect = 3e-23
Identities = 130/173 (75%), Gaps = 1/173 (1%)
Strand=Plus/Minus
Query 165 CGTGCCAGGTTCTCGGCGCGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTT 224
|| || | ||| || |||||||| | ||| || |||||||||| || | || |||
Sbjct 382411 CGGGCGATGTTTTCAGCGCGCTCGATGTACCGGAACATCCAATAGAGCCCGTTTGCCGTT 382352
Query 225 CTACGCAGCATA-CTCAGCCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGAC 283
|| | |||||| || | |||||| ||||||||||||||||| || ||||| ||
Sbjct 382351 CTGCCCAGCATGGCTTAATCCTCCAGTACCCAGGTGTCCTTGGTGCCGCCGCCCTGGCTG 382292
Query 284 GAGTTGACGACCAGCGAGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGG 336
|| ||||| ||||||||||| | |||||||| || ||||||| ||| |||||
Sbjct 382291 GAATTGACCACCAGCGAGCCCTTTTTCAGCGCAACACGGGTCAGGCCGCCGGG 382239
>seq6714
Length=1758414
Score = 105 bits (116), Expect = 1e-20
Identities = 82/98 (84%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 245 TCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAGCCT 304
|||| |||||| || ||||| || || ||||| || ||||| || || || |||||||||
Sbjct 181985 TCCAACACCCACGTATCCTTCGTCCCGCCGCCCTGAGACGAATTCACCACGAGCGAGCCT 182044
Query 305 TCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAG 342
||||||||||| || ||||||| ||| |||||||||||
Sbjct 182045 TCCTTCAGCGCGACACGGGTCAGGCCGCCGGGCACCAG 182082
>seq9910
Length=308115
Score = 102 bits (112), Expect = 2e-19
Identities = 80/96 (83%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 244 CTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAGCC 303
||||| |||||||||||| ||||| || |||||||| || ||||| || |||||||| ||
Sbjct 286537 CTCCAACACCCAGGTGTCTTTGGTGCCGCCGCCTTGAGATGAGTTCACCACCAGCGAACC 286596
Query 304 TTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCAC 339
||| || | |||||||||| ||| ||||| |||||
Sbjct 286597 TTCTTTTAACGCCACGCGGCACAAACCACCTGGCAC 286632
>seq12839
Length=204338
Score = 75.2 bits (82), Expect = 3e-11
Identities = 70/89 (79%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 251 ACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAGCCTTCCTTC 310
||||| || ||||| ||||||| ||||| || |||||||| ||||| || |||| | |
Sbjct 76626 ACCCATGTATCCTTAATTCCACCACCTTGTGATGAGTTGACCACCAGTGAACCTTGTTGC 76567
Query 311 AGCGCCACGCGGGTCAAGCCACCGGGCAC 339
| ||| || || ||||||||||| || ||
Sbjct 76566 ATCGCAACACGAGTCAAGCCACCTGGAAC 76538
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1119831339200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |