Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq9910 374 2e-101 seq13554 286 8e-75 seq6860 255 1e-65 seq5693 118 3e-24 >seq9910 Length=308115 Score = 374 bits (414), Expect = 2e-101 Identities = 330/410 (80%), Gaps = 4/410 (1%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 |||||||||||||||||||| || | |||||||||| |||| ||||||||| |||||||| Sbjct 260917 TTTACAACCCGAAGGCCTTCATCCTGCACGCGGCATTGCTGGATCAGGCTTTCGCCCATT 260976 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 260977 GTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 261036 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 |||||||| ||||||||||||||||| |||||||||||||||| || ||||| | || Sbjct 261037 GGCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTAGGTGAGCTTTTACCTCACCT 261096 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| || | || ||| || | ||| |||||| ||||| |||| Sbjct 261097 ACTAGCTAATCAGATATCGGCCGCTCCATTAACGCTAGGTCCGAAGATCCCCAGCTTTCC 261156 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 | | | |||||||||||||| | |||| | | |||||||||| || | | Sbjct 261157 CCCTCAGGGCGTATGCGGTATTAGCTAATCTTTCGACTAGTTATCCCCCATTATTGGATA 261216 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 |||| | | ||||||||||||| ||||||||| || | || |||||||| | | || Sbjct 261217 CGTTCCGATATATTACTCACCCGTTCGCCACTCGCCACC--AGGAGCAAGCTCC--CGTG 261272 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | ||||||||||||||||||| | || | |||||||||||||||||||| Sbjct 261273 CTGCCGTTCGACTTGCATGTGTAAAGCATTCCGCCAGCGTTCAATCTGAG 261322 >seq13554 Length=1007 Score = 286 bits (316), Expect = 8e-75 Identities = 178/191 (93%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||| ||||||||| ||| ||||||||||||||| ||||||||||||||||| Sbjct 69 CTTTACAACCCTAAGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTGCGCCCAT 128 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 129 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 188 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 || ||| ||||||||||||||||| || |||||||||||| |||| ||||||||||| || Sbjct 189 TGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCCCACC 248 Query 184 AACTAGCTAAT 194 ||||||||||| Sbjct 249 AACTAGCTAAT 259 >seq6860 Length=6169 Score = 255 bits (282), Expect = 1e-65 Identities = 305/412 (74%), Gaps = 34/412 (8%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||| | ||||||| ||| ||||||||||||||| |||||| |||| ||||| Sbjct 1369 CTTTACAACCCTAGGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGGTTGCCCCCAT 1310 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT- 122 ||| |||||||||||||||||||||||||||||||| ||| ||||||| |||| ||| | Sbjct 1309 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTC-CAGTCCCAATT 1251 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182 ||||||| |||||||||||||||||||| ||||||||||| |||| ||| ||||| | | Sbjct 1250 GTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTACCTCAC 1191 Query 183 CAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTT 242 ||||||||||||| | ||| ||| || | || | || | ||| | Sbjct 1190 CAACTAGCTAATCAGACGCGGGCCGCTCCAATGGCGATA------AATCTTTCCCCCGAA 1137 Query 243 GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGG 302 || | || || |||||||||| |||||| ||| | || ||| || Sbjct 1136 GGGC-----AC---ATACGGTATTAGCTCAAGTTTCCCTGAGTTGTTCCGTACCAAAGGG 1085 Query 303 CAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCC 362 || |||||| |||||||||||||||||||| | ||||| | | Sbjct 1084 CACGTTCCCACGTGTTACTCACCCGTCCGCCACT-AACCCCGAAG------GGT------ 1038 Query 363 TGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1037 -----CCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCGCTCTGAG 991 Score = 190 bits (210), Expect = 5e-46 Identities = 119/128 (93%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 68 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGC 127 |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 906 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGC 847 Query 128 TGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACT 187 || |||||||||||||||||||| ||||||||||| |||| ||||||||| | |||||| Sbjct 846 TGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCATTACCTCACCAACT 787 Query 188 AGCTAATC 195 |||||||| Sbjct 786 AGCTAATC 779 >seq5693 Length=377 Score = 118 bits (130), Expect = 3e-24 Identities = 123/158 (78%), Gaps = 10/158 (6%) Strand=Plus/Minus Query 259 GCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATT 318 ||||||||||| | |||| | | |||||||||| | | || | |||| | ||| Sbjct 377 GCGGTATTAGCTAATCTTTCGACTAGTTATCCCCCACAACAGGGTACGTTCCAATGTATT 318 Query 319 ACTCACCCGTCC--GCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGAC 376 |||||||||| | |||||||||||||| | | ||| |||||||||||||||| Sbjct 317 ACTCACCCGTTCTCGCCACTCGTCAGCGT--CCG-AAGA-----CCTGTTACCGTTCGAC 266 Query 377 TTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||||| |||| |||||||||||||||||||||| Sbjct 265 TTGCATGTGTAAGGCATGCCGCCAGCGTTCAATCTGAG 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222215918784