Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq9910 374 2e-101
seq13554 286 8e-75
seq6860 255 1e-65
seq5693 118 3e-24
>seq9910
Length=308115
Score = 374 bits (414), Expect = 2e-101
Identities = 330/410 (80%), Gaps = 4/410 (1%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|||||||||||||||||||| || | |||||||||| |||| ||||||||| ||||||||
Sbjct 260917 TTTACAACCCGAAGGCCTTCATCCTGCACGCGGCATTGCTGGATCAGGCTTTCGCCCATT 260976
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260977 GTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 261036
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
|||||||| ||||||||||||||||| |||||||||||||||| || ||||| | ||
Sbjct 261037 GGCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTAGGTGAGCTTTTACCTCACCT 261096
Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244
||||||||||| || | || ||| || | ||| |||||| ||||| ||||
Sbjct 261097 ACTAGCTAATCAGATATCGGCCGCTCCATTAACGCTAGGTCCGAAGATCCCCAGCTTTCC 261156
Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304
| | | |||||||||||||| | |||| | | |||||||||| || | |
Sbjct 261157 CCCTCAGGGCGTATGCGGTATTAGCTAATCTTTCGACTAGTTATCCCCCATTATTGGATA 261216
Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364
|||| | | ||||||||||||| ||||||||| || | || |||||||| | | ||
Sbjct 261217 CGTTCCGATATATTACTCACCCGTTCGCCACTCGCCACC--AGGAGCAAGCTCC--CGTG 261272
Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
| ||||||||||||||||||| | || | ||||||||||||||||||||
Sbjct 261273 CTGCCGTTCGACTTGCATGTGTAAAGCATTCCGCCAGCGTTCAATCTGAG 261322
>seq13554
Length=1007
Score = 286 bits (316), Expect = 8e-75
Identities = 178/191 (93%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63
||||||||||| ||||||||| ||| ||||||||||||||| |||||||||||||||||
Sbjct 69 CTTTACAACCCTAAGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTGCGCCCAT 128
Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 188
Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183
|| ||| ||||||||||||||||| || |||||||||||| |||| ||||||||||| ||
Sbjct 189 TGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCCCACC 248
Query 184 AACTAGCTAAT 194
|||||||||||
Sbjct 249 AACTAGCTAAT 259
>seq6860
Length=6169
Score = 255 bits (282), Expect = 1e-65
Identities = 305/412 (74%), Gaps = 34/412 (8%)
Strand=Plus/Minus
Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63
||||||||||| | ||||||| ||| ||||||||||||||| |||||| |||| |||||
Sbjct 1369 CTTTACAACCCTAGGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGGTTGCCCCCAT 1310
Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT- 122
||| |||||||||||||||||||||||||||||||| ||| ||||||| |||| ||| |
Sbjct 1309 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTC-CAGTCCCAATT 1251
Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182
||||||| |||||||||||||||||||| ||||||||||| |||| ||| ||||| | |
Sbjct 1250 GTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTACCTCAC 1191
Query 183 CAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTT 242
||||||||||||| | ||| ||| || | || | || | ||| |
Sbjct 1190 CAACTAGCTAATCAGACGCGGGCCGCTCCAATGGCGATA------AATCTTTCCCCCGAA 1137
Query 243 GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGG 302
|| | || || |||||||||| |||||| ||| | || ||| ||
Sbjct 1136 GGGC-----AC---ATACGGTATTAGCTCAAGTTTCCCTGAGTTGTTCCGTACCAAAGGG 1085
Query 303 CAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCC 362
|| |||||| |||||||||||||||||||| | ||||| | |
Sbjct 1084 CACGTTCCCACGTGTTACTCACCCGTCCGCCACT-AACCCCGAAG------GGT------ 1038
Query 363 TGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1037 -----CCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCGCTCTGAG 991
Score = 190 bits (210), Expect = 5e-46
Identities = 119/128 (93%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 68 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGC 127
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 906 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGC 847
Query 128 TGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACT 187
|| |||||||||||||||||||| ||||||||||| |||| ||||||||| | ||||||
Sbjct 846 TGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCATTACCTCACCAACT 787
Query 188 AGCTAATC 195
||||||||
Sbjct 786 AGCTAATC 779
>seq5693
Length=377
Score = 118 bits (130), Expect = 3e-24
Identities = 123/158 (78%), Gaps = 10/158 (6%)
Strand=Plus/Minus
Query 259 GCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATT 318
||||||||||| | |||| | | |||||||||| | | || | |||| | |||
Sbjct 377 GCGGTATTAGCTAATCTTTCGACTAGTTATCCCCCACAACAGGGTACGTTCCAATGTATT 318
Query 319 ACTCACCCGTCC--GCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGAC 376
|||||||||| | |||||||||||||| | | ||| ||||||||||||||||
Sbjct 317 ACTCACCCGTTCTCGCCACTCGTCAGCGT--CCG-AAGA-----CCTGTTACCGTTCGAC 266
Query 377 TTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|||||||||| |||| ||||||||||||||||||||||
Sbjct 265 TTGCATGTGTAAGGCATGCCGCCAGCGTTCAATCTGAG 228
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1222215918784
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |