Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq6860 398 2e-108
seq13554 322 1e-85
seq9910 322 1e-85
seq7320 116 1e-23
>seq6860
Length=6169
Score = 398 bits (440), Expect = 2e-108
Identities = 297/344 (86%), Gaps = 3/344 (1%)
Strand=Plus/Plus
Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217
|||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| |
Sbjct 1169 CCCGCGTCTGATTAGCTAGTTGGTGAGGTAAAGGCTCACCAAGGCGACGATCAGTAGCTG 1228
Query 218 ACCTGAGAGGGTGATCGGCCAC-ATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGG 276
|||||||| ||||| ||||| ||||| |||| ||||||| ||||||||||||||||||
Sbjct 1229 GTCTGAGAGGATGATCAGCCACAATTGGGACTG-GACACGGCCCAAACTCCTACGGGAGG 1287
Query 277 CAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGA 336
|||||||||||||||||| |||||||| || |||||| |||| | |||||||||| ||
Sbjct 1288 CAGCAGTGGGGAATATTGGACAATGGGGGCAACCCTGATCCAGCCATGCCGCGTGAGTGA 1347
Query 337 TGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAG 396
|||||||| | |||| |||||||||| | | |||||||||||||||||| | ||
Sbjct 1348 TGAAGGCCCTAGGGTTGTAAAGCTCTTTTGTGCGGGAAGATAATGACGGTACCGCAAGAA 1407
Query 397 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 456
||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
Sbjct 1408 TAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGCTC 1467
Query 457 GGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
||||| ||| |||||||||||||||||||| || | |||||||
Sbjct 1468 GGAATCACT-GGGCGTAAAGGGTGCGTAGGCGGGTCTTTAAGTC 1510
Score = 196 bits (216), Expect = 1e-47
Identities = 129/143 (90%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 152 GATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAG 211
||| | |||||||||||||||||||||||| |||||| |||| |||||||||||||||||
Sbjct 764 GATCGGCCCGCGTCTGATTAGCTAGTTGGTGAGGTAATGGCTCACCAAGGCGACGATCAG 823
Query 212 TAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACG 271
|||| | |||||||| ||||| |||||| ||| |||||||||||| ||| |||||||||
Sbjct 824 TAGCTGGTCTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACG 883
Query 272 GGAGGCAGCAGTGGGGAATATTG 294
|||||||||||||||||||||||
Sbjct 884 GGAGGCAGCAGTGGGGAATATTG 906
>seq13554
Length=1007
Score = 322 bits (356), Expect = 1e-85
Identities = 238/277 (86%), Gaps = 2/277 (1%)
Strand=Plus/Minus
Query 150 AGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATC 209
||||| | ||||||| |||||||||||||| ||||| |||| |||||||||||||||
Sbjct 275 AGGATTGGCCCGCGTT--ATTAGCTAGTTGGTGGGGTAATGGCTCACCAAGGCGACGATC 218
Query 210 AGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTA 269
||| | | |||||||| ||||| | |||| |||||||||||||||||||| |||||||
Sbjct 217 CGTAACTGGTCTGAGAGGATGATCAGTCACACTGGAACTGAGACACGGTCCAGACTCCTA 158
Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG 329
||||||||||||||||||||||||| ||||||||| ||||||||| |||| | ||||||
Sbjct 157 CGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCG 98
Query 330 TGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACT 389
|||| |||||||||||| |||| |||||||||| || | | |||||||||||||||| |
Sbjct 97 TGAGTGATGAAGGCCTTAGGGTTGTAAAGCTCTTTCACCGATGAAGATAATGACGGTAGT 38
Query 390 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCC 426
| || |||||||||||||||| |||||||||||||
Sbjct 37 CGGAGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCC 1
>seq9910
Length=308115
Score = 322 bits (356), Expect = 1e-85
Identities = 283/353 (80%), Gaps = 26/353 (7%)
Strand=Plus/Minus
Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223
|||||||||||||| ||| |||||| ||| ||| ||||||||||||||||| | ||||
Sbjct 261110 TCTGATTAGCTAGTAGGTGAGGTAAAAGCTCACCTAGGCGACGATCAGTAGCTGGTCTGA 261051
Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283
|||| || | |||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 261050 GAGGACGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGT 260991
Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343
||||||| ||| ||||||||| |||||||||| |||||| |||||||| |||||||||
Sbjct 260990 GGGGAATTTTGGACAATGGGCGAAAGCCTGATCCAGCAATGCCGCGTGCAGGATGAAGGC 260931
Query 344 CTTCGGGTCGTAAA--GC-TCTGTCCTCAAGGAAGA---------TA------------- 378
|||||||| ||||| || | ||| | || ||| | ||
Sbjct 260930 CTTCGGGTTGTAAACTGCTTTTGTACGGAACGAAAAAGCTCCTTCTAATACAGGGGGCCC 260871
Query 379 ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT 438
|||||||||| | || |||| ||||||||||||||||||||||||||||||||||||
Sbjct 260870 ATGACGGTACCGTAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT 260811
Query 439 AGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTT 491
|||| || ||||||| |||||||||| |||||||||| ||||| ||| ||||
Sbjct 260810 AGGGTGCGAGCGTTAATCGGAATTACT-GGGCGTAAAGCGTGCGCAGGCGGTT 260759
>seq7320
Length=4144
Score = 116 bits (128), Expect = 1e-23
Identities = 84/96 (88%), Gaps = 1/96 (1%)
Strand=Plus/Plus
Query 405 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTAC 464
|||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||
Sbjct 11 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTAATCGGAATTAC 70
Query 465 TGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
| |||||||||| ||||| ||| || | ||||||
Sbjct 71 T-GGGCGTAAAGCGTGCGCAGGCGGCCTGATAAGTC 105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1497374476416
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |