Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq6860 398 2e-108 seq13554 322 1e-85 seq9910 322 1e-85 seq7320 116 1e-23 >seq6860 Length=6169 Score = 398 bits (440), Expect = 2e-108 Identities = 297/344 (86%), Gaps = 3/344 (1%) Strand=Plus/Plus Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217 |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| | Sbjct 1169 CCCGCGTCTGATTAGCTAGTTGGTGAGGTAAAGGCTCACCAAGGCGACGATCAGTAGCTG 1228 Query 218 ACCTGAGAGGGTGATCGGCCAC-ATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGG 276 |||||||| ||||| ||||| ||||| |||| ||||||| |||||||||||||||||| Sbjct 1229 GTCTGAGAGGATGATCAGCCACAATTGGGACTG-GACACGGCCCAAACTCCTACGGGAGG 1287 Query 277 CAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGA 336 |||||||||||||||||| |||||||| || |||||| |||| | |||||||||| || Sbjct 1288 CAGCAGTGGGGAATATTGGACAATGGGGGCAACCCTGATCCAGCCATGCCGCGTGAGTGA 1347 Query 337 TGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAG 396 |||||||| | |||| |||||||||| | | |||||||||||||||||| | || Sbjct 1348 TGAAGGCCCTAGGGTTGTAAAGCTCTTTTGTGCGGGAAGATAATGACGGTACCGCAAGAA 1407 Query 397 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 456 ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| | Sbjct 1408 TAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGCTC 1467 Query 457 GGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||||| ||| |||||||||||||||||||| || | ||||||| Sbjct 1468 GGAATCACT-GGGCGTAAAGGGTGCGTAGGCGGGTCTTTAAGTC 1510 Score = 196 bits (216), Expect = 1e-47 Identities = 129/143 (90%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 152 GATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAG 211 ||| | |||||||||||||||||||||||| |||||| |||| ||||||||||||||||| Sbjct 764 GATCGGCCCGCGTCTGATTAGCTAGTTGGTGAGGTAATGGCTCACCAAGGCGACGATCAG 823 Query 212 TAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACG 271 |||| | |||||||| ||||| |||||| ||| |||||||||||| ||| ||||||||| Sbjct 824 TAGCTGGTCTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACG 883 Query 272 GGAGGCAGCAGTGGGGAATATTG 294 ||||||||||||||||||||||| Sbjct 884 GGAGGCAGCAGTGGGGAATATTG 906 >seq13554 Length=1007 Score = 322 bits (356), Expect = 1e-85 Identities = 238/277 (86%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 150 AGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATC 209 ||||| | ||||||| |||||||||||||| ||||| |||| ||||||||||||||| Sbjct 275 AGGATTGGCCCGCGTT--ATTAGCTAGTTGGTGGGGTAATGGCTCACCAAGGCGACGATC 218 Query 210 AGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTA 269 ||| | | |||||||| ||||| | |||| |||||||||||||||||||| ||||||| Sbjct 217 CGTAACTGGTCTGAGAGGATGATCAGTCACACTGGAACTGAGACACGGTCCAGACTCCTA 158 Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG 329 ||||||||||||||||||||||||| ||||||||| ||||||||| |||| | |||||| Sbjct 157 CGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCG 98 Query 330 TGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACT 389 |||| |||||||||||| |||| |||||||||| || | | |||||||||||||||| | Sbjct 97 TGAGTGATGAAGGCCTTAGGGTTGTAAAGCTCTTTCACCGATGAAGATAATGACGGTAGT 38 Query 390 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCC 426 | || |||||||||||||||| ||||||||||||| Sbjct 37 CGGAGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCC 1 >seq9910 Length=308115 Score = 322 bits (356), Expect = 1e-85 Identities = 283/353 (80%), Gaps = 26/353 (7%) Strand=Plus/Minus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 |||||||||||||| ||| |||||| ||| ||| ||||||||||||||||| | |||| Sbjct 261110 TCTGATTAGCTAGTAGGTGAGGTAAAAGCTCACCTAGGCGACGATCAGTAGCTGGTCTGA 261051 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| || | |||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 261050 GAGGACGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGT 260991 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343 ||||||| ||| ||||||||| |||||||||| |||||| |||||||| ||||||||| Sbjct 260990 GGGGAATTTTGGACAATGGGCGAAAGCCTGATCCAGCAATGCCGCGTGCAGGATGAAGGC 260931 Query 344 CTTCGGGTCGTAAA--GC-TCTGTCCTCAAGGAAGA---------TA------------- 378 |||||||| ||||| || | ||| | || ||| | || Sbjct 260930 CTTCGGGTTGTAAACTGCTTTTGTACGGAACGAAAAAGCTCCTTCTAATACAGGGGGCCC 260871 Query 379 ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT 438 |||||||||| | || |||| |||||||||||||||||||||||||||||||||||| Sbjct 260870 ATGACGGTACCGTAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT 260811 Query 439 AGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTT 491 |||| || ||||||| |||||||||| |||||||||| ||||| ||| |||| Sbjct 260810 AGGGTGCGAGCGTTAATCGGAATTACT-GGGCGTAAAGCGTGCGCAGGCGGTT 260759 >seq7320 Length=4144 Score = 116 bits (128), Expect = 1e-23 Identities = 84/96 (88%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 405 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTAC 464 |||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||| Sbjct 11 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTAATCGGAATTAC 70 Query 465 TGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | |||||||||| ||||| ||| || | |||||| Sbjct 71 T-GGGCGTAAAGCGTGCGCAGGCGGCCTGATAAGTC 105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497374476416