Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq6860 396 6e-108 seq7320 354 2e-95 seq9910 351 2e-94 >seq6860 Length=6169 Score = 396 bits (438), Expect = 6e-108 Identities = 326/396 (82%), Gaps = 2/396 (1%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 1409 AAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGCTCG 1468 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||| ||||||||||||||||||||||| || | ||||||||| ||||||| || | Sbjct 1469 GAATCACTGGGCGTAAAGGGTGCGTAGGCGGGTCTTTAAGTCAGGGGTGAAATCCTGGAG 1528 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 |||||| || | ||||| ||||| |||| | || |||| | | || || ||||||| Sbjct 1529 CTCAACTCCAGAACTGCCTTTGATACTGAGGATCTTGAGTCCGGAAGAGGTGAGTGGAAC 1588 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 | | ||||||| |||||||| |||||||||| | | ||||||||||||||||||||||| Sbjct 1589 TGCGAGTGTAGAGGTGAAATTCGTAGATATTCGCAAGAACACCAGTGGCGAAGGCGGCTC 1648 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 |||| | | |||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 1649 ACTGGTCCGGTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 1708 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGC 372 ||||||||||||| ||||||||||||| | || || |||| | || || | ||| Sbjct 1709 TGGTAGTCCACGCTGTAAACGATGAATGCCAGCCGTTGGGGAGTTTA--CTCTTCAGTGG 1766 Query 373 CGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||||| ||||| |||| ||||| ||||||||||| Sbjct 1767 CGCAGTTAACGCTTTAAGCATTCCGCCTGGGGAGTA 1802 >seq7320 Length=4144 Score = 354 bits (392), Expect = 2e-95 Identities = 315/391 (81%), Gaps = 5/391 (1%) Strand=Plus/Plus Query 20 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTAC 79 |||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||| Sbjct 11 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTAATCGGAATTAC 70 Query 80 TGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACC 139 ||||||||||| ||||| ||| || | ||||||||| |||||| | ||||||| Sbjct 71 TGGGCGTAAAGCGTGCGCAGGCGGCCTGATAAGTCAGATGTGAAATCCCCGAGCTCAACT 130 Query 140 CCGGGACTGCTTTTGAAACTGCAGGGCTAGAGT--GCAGGAGGGGCAAGTGGAATTCCTA 197 || ||||| ||||||||| |||||| | | |||||| || ||||||| Sbjct 131 TGGGAACTGCGTTTGAAACTATCAAGCTAGAATATGTCAGAGGGGG--GTAGAATTCCAC 188 Query 198 GTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGG 257 ||||||| |||||||||||||| || ||||||| |||| |||||||||| || |||| Sbjct 189 GTGTAGCAGTGAAATGCGTAGAGATGTGGAGGAATACCAATGGCGAAGGCAGCCCCCTGG 248 Query 258 ACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTA 317 | | |||| || | || ||||||||||||||||||||||||||||||||||||||| Sbjct 249 GATAATATTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTA 308 Query 318 GTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGCCGCAG 377 ||||||||||||||||||||| ||||| ||| ||| | || |||| | |||| ||||| Sbjct 309 GTCCACGCCGTAAACGATGAAAACTAGCTGTTGGGAAGTAT-AGTGTTTTGGTGGCGCAG 367 Query 378 CAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | |||||| ||||| ||| ||||||||||| Sbjct 368 CTAACGCATTAAGTTATCCGCCTGGGGAGTA 398 >seq9910 Length=308115 Score = 351 bits (388), Expect = 2e-94 Identities = 287/344 (83%), Gaps = 6/344 (2%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||||||||||||||||||||||||||||||||| || ||||||| || Sbjct 260851 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTAATCG 260792 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||||||||||||||||| ||||| ||| |||| |||| |||| |||||| | || Sbjct 260791 GAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTATGTAAGACAGATGTGAAATCCCCGGG 260732 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAG--GAGGGGCAAGTGGA 190 ||||||| || ||||| |||| |||||| ||||||||| | | |||||| | |||| Sbjct 260731 CTCAACCTGGGAACTGCATTTGTGACTGCATGGCTAGAGTACGGTAGAGGGGGA--TGGA 260674 Query 191 ATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGC 250 ||||| ||||||| ||||||||||||||||| ||||||||||| |||||||||| Sbjct 260673 ATTCCGCGTGTAGCAGTGAAATGCGTAGATATGCGGAGGAACACCGATGGCGAAGGCAAT 260614 Query 251 TTGCTGGAC-TGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATA 309 |||||| |||| ||||| || | || ||||||||||||||||||||||||||||||| Sbjct 260613 CCCCTGGACCTGTA-CTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATA 260555 Query 310 CCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGG 353 ||||||||||||||||| ||||||||| ||||| ||| |||| Sbjct 260554 CCCTGGTAGTCCACGCCCTAAACGATGTCAACTAGTTGTTGGGG 260511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203018810112