Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= AAMG01002183.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
seq6860 396 6e-108
seq7320 354 2e-95
seq9910 351 2e-94
>seq6860
Length=6169
Score = 396 bits (438), Expect = 6e-108
Identities = 326/396 (82%), Gaps = 2/396 (1%)
Strand=Plus/Plus
Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72
||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1409 AAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGCTCG 1468
Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132
|||| ||||||||||||||||||||||| || | ||||||||| ||||||| || |
Sbjct 1469 GAATCACTGGGCGTAAAGGGTGCGTAGGCGGGTCTTTAAGTCAGGGGTGAAATCCTGGAG 1528
Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192
|||||| || | ||||| ||||| |||| | || |||| | | || || |||||||
Sbjct 1529 CTCAACTCCAGAACTGCCTTTGATACTGAGGATCTTGAGTCCGGAAGAGGTGAGTGGAAC 1588
Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252
| | ||||||| |||||||| |||||||||| | | |||||||||||||||||||||||
Sbjct 1589 TGCGAGTGTAGAGGTGAAATTCGTAGATATTCGCAAGAACACCAGTGGCGAAGGCGGCTC 1648
Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312
|||| | | |||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1649 ACTGGTCCGGTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 1708
Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGC 372
||||||||||||| ||||||||||||| | || || |||| | || || | |||
Sbjct 1709 TGGTAGTCCACGCTGTAAACGATGAATGCCAGCCGTTGGGGAGTTTA--CTCTTCAGTGG 1766
Query 373 CGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408
||||| ||||| |||| ||||| |||||||||||
Sbjct 1767 CGCAGTTAACGCTTTAAGCATTCCGCCTGGGGAGTA 1802
>seq7320
Length=4144
Score = 354 bits (392), Expect = 2e-95
Identities = 315/391 (81%), Gaps = 5/391 (1%)
Strand=Plus/Plus
Query 20 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTAC 79
|||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||
Sbjct 11 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTAATCGGAATTAC 70
Query 80 TGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACC 139
||||||||||| ||||| ||| || | ||||||||| |||||| | |||||||
Sbjct 71 TGGGCGTAAAGCGTGCGCAGGCGGCCTGATAAGTCAGATGTGAAATCCCCGAGCTCAACT 130
Query 140 CCGGGACTGCTTTTGAAACTGCAGGGCTAGAGT--GCAGGAGGGGCAAGTGGAATTCCTA 197
|| ||||| ||||||||| |||||| | | |||||| || |||||||
Sbjct 131 TGGGAACTGCGTTTGAAACTATCAAGCTAGAATATGTCAGAGGGGG--GTAGAATTCCAC 188
Query 198 GTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGG 257
||||||| |||||||||||||| || ||||||| |||| |||||||||| || ||||
Sbjct 189 GTGTAGCAGTGAAATGCGTAGAGATGTGGAGGAATACCAATGGCGAAGGCAGCCCCCTGG 248
Query 258 ACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTA 317
| | |||| || | || |||||||||||||||||||||||||||||||||||||||
Sbjct 249 GATAATATTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTA 308
Query 318 GTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGCCGCAG 377
||||||||||||||||||||| ||||| ||| ||| | || |||| | |||| |||||
Sbjct 309 GTCCACGCCGTAAACGATGAAAACTAGCTGTTGGGAAGTAT-AGTGTTTTGGTGGCGCAG 367
Query 378 CAAACGCAATAAGTATTCCACCTGGGGAGTA 408
| |||||| ||||| ||| |||||||||||
Sbjct 368 CTAACGCATTAAGTTATCCGCCTGGGGAGTA 398
>seq9910
Length=308115
Score = 351 bits (388), Expect = 2e-94
Identities = 287/344 (83%), Gaps = 6/344 (2%)
Strand=Plus/Minus
Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72
|||| |||||||||||||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 260851 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTAATCG 260792
Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132
|||||||||||||||||| ||||| ||| |||| |||| |||| |||||| | ||
Sbjct 260791 GAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTATGTAAGACAGATGTGAAATCCCCGGG 260732
Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAG--GAGGGGCAAGTGGA 190
||||||| || ||||| |||| |||||| ||||||||| | | |||||| | ||||
Sbjct 260731 CTCAACCTGGGAACTGCATTTGTGACTGCATGGCTAGAGTACGGTAGAGGGGGA--TGGA 260674
Query 191 ATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGC 250
||||| ||||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 260673 ATTCCGCGTGTAGCAGTGAAATGCGTAGATATGCGGAGGAACACCGATGGCGAAGGCAAT 260614
Query 251 TTGCTGGAC-TGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATA 309
|||||| |||| ||||| || | || |||||||||||||||||||||||||||||||
Sbjct 260613 CCCCTGGACCTGTA-CTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATA 260555
Query 310 CCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGG 353
||||||||||||||||| ||||||||| ||||| ||| ||||
Sbjct 260554 CCCTGGTAGTCCACGCCCTAAACGATGTCAACTAGTTGTTGGGG 260511
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203018810112
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